SCOPe 2.08: Protein: Beta chain

Lineage for Protein: Beta chain

Root: SCOPe 2.08
Class d: Alpha and beta proteins (a+b) [53931] (396 folds)
Fold d.58: Ferredoxin-like [54861] (62 superfamilies)
alpha+beta sandwich with antiparallel beta-sheet; (beta-alpha-beta)x2

Superfamily d.58.31: Methyl-coenzyme M reductase subunits [55088] (3 families)

(S)

each of the three different subunits, alpha, beta and gamma, contains this fold decorated with additional secondary structures

Family d.58.31.2: Methyl-coenzyme M reductase alpha and beta chain N-terminal domain [55094] (3 proteins)
C-terminal domain is all-alpha
Protein Beta chain [55099] (3 species)

Species:

Methanobacterium thermoautotrophicum [TaxId:145262] [55100] (11 PDB entries)

Domains for 1hbm:
1. Domain d1hbmb2: 1hbm B:2-188 [60891]
  Other proteins in same PDB: d1hbma1, d1hbma2, d1hbmb1, d1hbmc_, d1hbmd1, d1hbmd2, d1hbme1, d1hbmf_
  complexed with cl, f43, gol, mg, na, sht, zn
2. Domain d1hbme2: 1hbm E:2-188 [60896]
  Other proteins in same PDB: d1hbma1, d1hbma2, d1hbmb1, d1hbmc_, d1hbmd1, d1hbmd2, d1hbme1, d1hbmf_
  complexed with cl, f43, gol, mg, na, sht, zn
Domains for 1hbn:
1. Domain d1hbnb2: 1hbn B:2-188 [60901]
  Other proteins in same PDB: d1hbna1, d1hbna2, d1hbnb1, d1hbnc_, d1hbnd1, d1hbnd2, d1hbne1, d1hbnf_
  complexed with cl, com, f43, gol, mg, na, tp7, zn
2. Domain d1hbne2: 1hbn E:2-188 [60906]
  Other proteins in same PDB: d1hbna1, d1hbna2, d1hbnb1, d1hbnc_, d1hbnd1, d1hbnd2, d1hbne1, d1hbnf_
  complexed with cl, com, f43, gol, mg, na, tp7, zn
Domains for 1hbo:
1. Domain d1hbob2: 1hbo B:2-188 [60911]
  Other proteins in same PDB: d1hboa1, d1hboa2, d1hbob1, d1hboc_, d1hbod1, d1hbod2, d1hboe1, d1hbof_
  complexed with cl, com, f43, gol, mg, na, tp7, zn
2. Domain d1hboe2: 1hbo E:2-188 [60916]
  Other proteins in same PDB: d1hboa1, d1hboa2, d1hbob1, d1hboc_, d1hbod1, d1hbod2, d1hboe1, d1hbof_
  complexed with cl, com, f43, gol, mg, na, tp7, zn
Domains for 1hbu:
1. Domain d1hbub2: 1hbu B:2-188 [60921]
  Other proteins in same PDB: d1hbua1, d1hbua2, d1hbub1, d1hbuc_, d1hbud1, d1hbud2, d1hbue1, d1hbuf_
  complexed with cl, com, f43, gol, mg, na, tp7, zn
2. Domain d1hbue2: 1hbu E:2-188 [60926]
  Other proteins in same PDB: d1hbua1, d1hbua2, d1hbub1, d1hbuc_, d1hbud1, d1hbud2, d1hbue1, d1hbuf_
  complexed with cl, com, f43, gol, mg, na, tp7, zn
Domains for 1mro:
1. Domain d1mrob2: 1mro B:2-188 [39449]
  Other proteins in same PDB: d1mroa1, d1mroa2, d1mrob1, d1mroc_, d1mrod1, d1mrod2, d1mroe1, d1mrof_
  complexed with com, f43, gol, na, tp7, zn
2. Domain d1mroe2: 1mro E:2-188 [39450]
  Other proteins in same PDB: d1mroa1, d1mroa2, d1mrob1, d1mroc_, d1mrod1, d1mrod2, d1mroe1, d1mrof_
  complexed with com, f43, gol, na, tp7, zn

Domains for 3m1v:

Domain d3m1vb1: 3m1v B:2-188 [199771]
Other proteins in same PDB: d3m1va1, d3m1va2, d3m1vb2, d3m1vc_, d3m1vd1, d3m1vd2, d3m1ve2, d3m1vf_
automated match to d1hbnb2
complexed with act, com, edo, f43, mg, peg, tp7, zn

Domain d3m1ve1: 3m1v E:2-188 [199775]
Other proteins in same PDB: d3m1va1, d3m1va2, d3m1vb2, d3m1vc_, d3m1vd1, d3m1vd2, d3m1ve2, d3m1vf_
automated match to d1hbnb2
complexed with act, com, edo, f43, mg, peg, tp7, zn

Domains for 3m2r:

Domain d3m2rb1: 3m2r B:2-188 [199779]
Other proteins in same PDB: d3m2ra1, d3m2ra2, d3m2rb2, d3m2rc_, d3m2rd1, d3m2rd2, d3m2re2, d3m2rf_
automated match to d1hbnb2
complexed with com, edo, f43, mg, peg, tp7, tpz, zn

Domain d3m2re1: 3m2r E:2-188 [199783]
Other proteins in same PDB: d3m2ra1, d3m2ra2, d3m2rb2, d3m2rc_, d3m2rd1, d3m2rd2, d3m2re2, d3m2rf_
automated match to d1hbnb2
complexed with com, edo, f43, mg, peg, tp7, tpz, zn

Domains for 3m2u:

Domain d3m2ub1: 3m2u B:2-188 [199787]
Other proteins in same PDB: d3m2ua1, d3m2ua2, d3m2ub2, d3m2uc_, d3m2ud1, d3m2ud2, d3m2ue2, d3m2uf_
automated match to d1hbnb2
complexed with act, com, edo, f43, mg, peg, tp7, txz, zn

Domain d3m2ue1: 3m2u E:2-188 [199791]
Other proteins in same PDB: d3m2ua1, d3m2ua2, d3m2ub2, d3m2uc_, d3m2ud1, d3m2ud2, d3m2ue2, d3m2uf_
automated match to d1hbnb2
complexed with act, com, edo, f43, mg, peg, tp7, txz, zn

Domains for 3m2v:

Domain d3m2vb1: 3m2v B:2-188 [199795]
Other proteins in same PDB: d3m2va1, d3m2va2, d3m2vb2, d3m2vc_, d3m2vd1, d3m2vd2, d3m2ve2, d3m2vf_
automated match to d1hbnb2
complexed with act, com, edo, f43, mg, tp7, xp8, zn

Domain d3m2ve1: 3m2v E:2-188 [199799]
Other proteins in same PDB: d3m2va1, d3m2va2, d3m2vb2, d3m2vc_, d3m2vd1, d3m2vd2, d3m2ve2, d3m2vf_
automated match to d1hbnb2
complexed with act, com, edo, f43, mg, tp7, xp8, zn

Domains for 3m30:

Domain d3m30b1: 3m30 B:2-188 [199803]
Other proteins in same PDB: d3m30a1, d3m30a2, d3m30b2, d3m30c_, d3m30d1, d3m30d2, d3m30e2, d3m30f_
automated match to d1hbnb2
complexed with act, com, edo, f43, mg, peg, tp7, xp9, zn

Domain d3m30e1: 3m30 E:2-188 [199807]
Other proteins in same PDB: d3m30a1, d3m30a2, d3m30b2, d3m30c_, d3m30d1, d3m30d2, d3m30e2, d3m30f_
automated match to d1hbnb2
complexed with act, com, edo, f43, mg, peg, tp7, xp9, zn

Domains for 3m32:

Domain d3m32b1: 3m32 B:2-188 [199811]
Other proteins in same PDB: d3m32a1, d3m32a2, d3m32b2, d3m32c_, d3m32d1, d3m32d2, d3m32e2, d3m32f_
automated match to d1hbnb2
complexed with act, com, edo, f43, mg, peg, sht, tp7, zn

Domain d3m32e1: 3m32 E:2-188 [199815]
Other proteins in same PDB: d3m32a1, d3m32a2, d3m32b2, d3m32c_, d3m32d1, d3m32d2, d3m32e2, d3m32f_
automated match to d1hbnb2
complexed with act, com, edo, f43, mg, peg, sht, tp7, zn

Methanopyrus kandleri [TaxId:2320] [55101] (1 PDB entry)
- Domains for 1e6v:
  1. Domain d1e6vb2: 1e6v B:7-189 [39451]
    Other proteins in same PDB: d1e6va1, d1e6va2, d1e6vb1, d1e6vc_, d1e6vd1, d1e6vd2, d1e6ve1, d1e6vf_
    complexed with com, f43, tp7
  2. Domain d1e6ve2: 1e6v E:7-189 [39452]
    Other proteins in same PDB: d1e6va1, d1e6va2, d1e6vb1, d1e6vc_, d1e6vd1, d1e6vd2, d1e6ve1, d1e6vf_
    complexed with com, f43, tp7
Methanosarcina barkeri [TaxId:2208] [55102] (1 PDB entry)
- Domains for 1e6y:
  1. Domain d1e6yb2: 1e6y B:2002-2185 [39453]
    Other proteins in same PDB: d1e6ya1, d1e6ya2, d1e6yb1, d1e6yc_, d1e6yd1, d1e6yd2, d1e6ye1, d1e6yf_
    complexed with com, f43, gol, tp7
  2. Domain d1e6ye2: 1e6y E:5002-5185 [39454]
    Other proteins in same PDB: d1e6ya1, d1e6ya2, d1e6yb1, d1e6yc_, d1e6yd1, d1e6yd2, d1e6ye1, d1e6yf_
    complexed with com, f43, gol, tp7

More info for Protein Beta chain from d.58.31.2: Methyl-coenzyme M reductase alpha and beta chain N-terminal domain

Timeline for Protein Beta chain from d.58.31.2: Methyl-coenzyme M reductase alpha and beta chain N-terminal domain:

Protein Beta chain from d.58.31.2: Methyl-coenzyme M reductase alpha and beta chain N-terminal domain first appeared (with stable ids) in SCOP 1.55
Protein Beta chain from d.58.31.2: Methyl-coenzyme M reductase alpha and beta chain N-terminal domain appears in SCOPe 2.07