Class d: Alpha and beta proteins (a+b) [53931] (380 folds) |
Fold d.58: Ferredoxin-like [54861] (59 superfamilies) alpha+beta sandwich with antiparallel beta-sheet; (beta-alpha-beta)x2 |
Superfamily d.58.7: RNA-binding domain, RBD [54928] (6 families) |
Family d.58.7.1: Canonical RBD [54929] (68 proteins) |
Alkylation repair AlkB homolog 8, ALKBH8 [143334] (1 species) |
Species Human (Homo sapiens) [TaxId:9606] [143335] (1 PDB entry) Uniprot Q96BT7 25-125 |
APOBEC1 stimulating protein [143326] (1 species) |
Species Human (Homo sapiens) [TaxId:9606] [143327] (1 PDB entry) Uniprot Q9NQ94 223-308 |
Arginine/serine-rich splicing factor 10 [143312] (1 species) |
Species Human (Homo sapiens) [TaxId:9606] [143313] (1 PDB entry) Uniprot P62995 109-191 |
Ataxin-2-binding protein 1 [143292] (1 species) |
Species Human (Homo sapiens) [TaxId:9606] [143293] (1 PDB entry) Uniprot Q9NWB1 109-196 |
Calcipressin-1 [117953] (1 species) |
Species Mouse (Mus musculus) [TaxId:10090] [117954] (1 PDB entry) Uniprot Q9JHG6 14-103 |
CBP20, 20KDa nuclear cap-binding protein [64274] (1 species) |
Species Human (Homo sapiens) [TaxId:9606] [64275] (7 PDB entries) |
Cleavage stimulation factor, 64 kda subunit [102983] (1 species) |
Species Human (Homo sapiens) [TaxId:9606] [102984] (1 PDB entry) |
Cold-inducible RNA-binding protein [143300] (1 species) |
Species Human (Homo sapiens) [TaxId:9606] [143301] (1 PDB entry) Uniprot Q14011 1-90 |
CUG triplet repeat RNA-binding protein 1 [143336] (1 species) |
Species Human (Homo sapiens) [TaxId:9606] [143337] (2 PDB entries) Uniprot Q92879 383-484 |
E3 ubiquitin protein ligase CNOT4 [143294] (1 species) CCR4-NOT transcription complex subunit 4 |
Species Mouse (Mus musculus) [TaxId:10090] [143295] (1 PDB entry) Uniprot Q8BT14 101-198 |
Eukaryotic translation initiation factor 3 subunit 4 [143304] (1 species) |
Species Human (Homo sapiens) [TaxId:9606] [143305] (1 PDB entry) Uniprot O75821 231-320 |
Eukaryotic translation initiation factor 4B [117973] (1 species) |
Species Human (Homo sapiens) [TaxId:9606] [117974] (1 PDB entry) Uniprot P23588 88-178 |
Heterogeneous nuclear ribonucleoprotein d0 [54944] (1 species) |
Species Human (Homo sapiens) [TaxId:9606] [54945] (2 PDB entries) |
Heterogeneous nuclear ribonucleoprotein H' [117955] (1 species) |
Species Human (Homo sapiens) [TaxId:9606] [117956] (2 PDB entries) Uniprot P55795 103-193; 280-369 |
Heterogeneous nuclear ribonucleoprotein L-like [117951] (1 species) |
Species Mouse (Mus musculus) [TaxId:10090] [117952] (1 PDB entry) Uniprot Q921F4 116-207 |
Heterogeneous nuclear ribonucleoproteins A2/B1 [143342] (1 species) |
Species Human (Homo sapiens) [TaxId:9606] [143343] (1 PDB entry) Uniprot P22626 1-103 |
Heterogeneous nuclear ribonucleoproteins C1/C2 [117961] (1 species) |
Species Human (Homo sapiens) [TaxId:9606] [117962] (1 PDB entry) Uniprot P07910 8-92 |
HIV Tat-specific factor 1 [143290] (1 species) |
Species Human (Homo sapiens) [TaxId:9606] [143291] (1 PDB entry) Uniprot O43719 256-354 |
Hu antigen C (Huc) [54940] (1 species) |
Species Mouse (Mus musculus) [TaxId:10090] [54941] (3 PDB entries) |
Hu antigen D (Hud) [54942] (1 species) |
Species Human (Homo sapiens) [TaxId:9606] [54943] (2 PDB entries) |
Hypothetical protein FLJ20273 [143328] (1 species) |
Species Human (Homo sapiens) [TaxId:9606] [143329] (1 PDB entry) Uniprot Q8NI52 150-245 |
IGF-II mRNA-binding protein 2 isoform A [143344] (1 species) |
Species Human (Homo sapiens) [TaxId:9606] [143345] (1 PDB entry) Uniprot Q9Y6M1 2-81 |
Limkain-b1, LKAP [143324] (1 species) KIAA0430 |
Species Human (Homo sapiens) [TaxId:9606] [143325] (1 PDB entry) Uniprot Q9Y4F3 788-870 |
Lupus LA protein [89940] (1 species) |
Species Human (Homo sapiens) [TaxId:9606] [89941] (8 PDB entries) |
Matrin 3 [143306] (1 species) |
Species Mouse (Mus musculus) [TaxId:10090] [143307] (2 PDB entries) Uniprot Q8K310 390-478! Uniprot Q8K310 478-576 |
Musashi-1 [102981] (1 species) |
Species Mouse (Mus musculus) [TaxId:10090] [102982] (1 PDB entry) |
Negative elongation factor E, NELF-E [143302] (1 species) |
Species Human (Homo sapiens) [TaxId:9606] [143303] (3 PDB entries) Uniprot P18615 257-335! Uniprot P18615 258-341 |
Neural RNA-binding protein Musashi-1 [54946] (1 species) |
Species Mouse (Mus musculus) [TaxId:10090] [54947] (2 PDB entries) |
Non-POU domain-containing octamer-binding protein, NonO [143354] (1 species) |
Species Mouse (Mus musculus) [TaxId:10090] [143355] (2 PDB entries) Uniprot Q99K48 68-153 |
Nuclear factor Aly [102979] (1 species) |
Species Mouse (Mus musculus) [TaxId:10090] [102980] (1 PDB entry) |
Nuclear ribonucleoprotein A1 (RNP A1, UP1) [54930] (1 species) duplication: contains two domains of this fold |
Species Human (Homo sapiens) [TaxId:9606] [54931] (14 PDB entries) Uniprot P09651 7-188 |
Nuclear ribonucleoprotein D0 (AUF1) [75439] (1 species) |
Nucleolin [54952] (2 species) |
Species Golden hamster (Mesocricetus auratus) [TaxId:10036] [54953] (4 PDB entries) |
Species Human (Homo sapiens) [TaxId:9606] [255371] (1 PDB entry) |
Nucleolysin TIAR [143298] (1 species) |
Species Human (Homo sapiens) [TaxId:9606] [143299] (3 PDB entries) Uniprot Q01085 1-90! Uniprot Q01085 187-282 |
Nucleoporin 35 [143330] (1 species) |
Species Mouse (Mus musculus) [TaxId:10090] [143331] (1 PDB entry) Uniprot Q8R4R6 169-249 |
Peptidyl-prolyl cis-trans isomerase E, N-terminal domain [143310] (1 species) |
Species Human (Homo sapiens) [TaxId:9606] [143311] (1 PDB entry) Uniprot Q9UNP9 1-89 |
Poly(A)-binding protein [54948] (1 species) |
Species Human (Homo sapiens) [TaxId:9606] [54949] (1 PDB entry) |
Poly(A)-specific ribonuclease PARN [117967] (1 species) |
Species Mouse (Mus musculus) [TaxId:10090] [117968] (1 PDB entry) Uniprot Q8VDG3 430-516; structure of the R3H domain (162-248) is also known (111031) |
Polypyrimidine tract-binding protein [54950] (1 species) |
Species Human (Homo sapiens) [TaxId:9606] [54951] (7 PDB entries) Uniprot P26599 54-141, 177-284, 335-531 |
Polypyrimidine tract-binding protein 2, PTBP2 [143332] (1 species) |
Species Human (Homo sapiens) [TaxId:9606] [143333] (1 PDB entry) Uniprot Q9UKA9 51-138 |
Pre-mRNA branch site protein p14 [143316] (1 species) |
Species Human (Homo sapiens) [TaxId:9606] [143317] (2 PDB entries) Uniprot Q9Y3B4 12-125 |
Probable RNA-binding protein 19, Rbm19 [117969] (1 species) |
Species Mouse (Mus musculus) [TaxId:10090] [117970] (4 PDB entries) Uniprot Q8R3C6 399-484; 581-678 |
Probable RNA-binding protein KIAA1579 [117963] (1 species) |
Species Human (Homo sapiens) [TaxId:9606] [117964] (1 PDB entry) Uniprot Q9HCJ3 71-145 |
Putative RNA-binding protein 15B, Rbm15b [117971] (1 species) |
Species Mouse (Mus musculus) [TaxId:10090] [117972] (1 PDB entry) Uniprot Q6PHZ5 81-164 |
Ribonucleoprotein PTB-binding 1, Raver-1 [143308] (1 species) |
Species Mouse (Mus musculus) [TaxId:10090] [143309] (1 PDB entry) Uniprot Q9CW46 61-135 |
RNA binding protein 23 [143352] (1 species) |
Species Human (Homo sapiens) [TaxId:9606] [143353] (2 PDB entries) Uniprot Q86U06 148-248 |
RNA-binding motif, single-stranded-interacting protein 1, RBMS1 [143356] (1 species) |
Species Human (Homo sapiens) [TaxId:9606] [143357] (1 PDB entry) Uniprot P29558 123-223 |
RNA-binding motif, single-stranded-interacting protein 2, RBMS2 [143320] (1 species) |
Species Human (Homo sapiens) [TaxId:9606] [143321] (1 PDB entry) Uniprot Q15434 58-129 |
RNA-binding protein 12 [143349] (2 species) 3rd RBD |
Species Human (Homo sapiens) [TaxId:9606] [143350] (3 PDB entries) Uniprot Q9NTZ6 412-523! Uniprot Q9NTZ6 536-638 |
Species Mouse (Mus musculus) [TaxId:10090] [143351] (1 PDB entry) Uniprot Q8R4X3 917-1002 |
RNA-binding protein 28 [143358] (1 species) |
Species Mouse (Mus musculus) [TaxId:10090] [143359] (1 PDB entry) Uniprot Q8CGC6 316-413 |
RNA-binding protein 41, RBM41 [143296] (1 species) |
Species Human (Homo sapiens) [TaxId:9606] [143297] (1 PDB entry) Uniprot Q96IZ5 291-392 |
RNA-binding protein 8 [89938] (2 species) |
Species Fruit fly (Drosophila melanogaster) [TaxId:7227] [89939] (3 PDB entries) CG8781 protein |
Species Human (Homo sapiens) [TaxId:9606] [102978] (3 PDB entries) RBM8A, Y14 |
RNA-binding protein 9 [143314] (1 species) |
Species Human (Homo sapiens) [TaxId:9606] [143315] (1 PDB entry) Uniprot O43251 110-202 |
RNA-binding protein EWS [143340] (1 species) |
Species Human (Homo sapiens) [TaxId:9606] [143341] (1 PDB entry) Uniprot Q01844 353-453 |
RNA-binding protein Raly (Autoantigen p542) [117959] (1 species) |
Species Human (Homo sapiens) [TaxId:9606] [117960] (1 PDB entry) Uniprot Q9UKM9 1-97 |
RNA-binding protein UBP1 [143322] (1 species) |
Species Trypanosoma cruzi [TaxId:5693] [143323] (1 PDB entry) Uniprot Q967R0 1-139 |
RNA-binding region containing protein 1 [143360] (1 species) |
Species Human (Homo sapiens) [TaxId:9606] [143361] (1 PDB entry) Uniprot Q9H0Z9 1-103 |
Sex-lethal protein [54938] (1 species) |
Species Fruit fly (Drosophila melanogaster) [TaxId:7227] [54939] (4 PDB entries) |
Splicesomal U1A protein [54932] (2 species) duplication: contains two domains of this fold |
Species Fruit fly (Drosophila melanogaster) [TaxId:7227] [160313] (3 PDB entries) Uniprot P43332 1-104! Uniprot P43332 134-216 |
Species Human (Homo sapiens) [TaxId:9606] [54933] (43 PDB entries) Uniprot P09012 1-97 ! Uniprot P09012 4-98 ! Uniprot P09012 1-98 |
Splicing factor 3B subunit 4 [143318] (1 species) |
Species Human (Homo sapiens) [TaxId:9606] [143319] (2 PDB entries) Uniprot Q15427 102-184! Uniprot Q15427 4-96 |
Splicing factor U2AF 65 KDa subunit [54936] (2 species) |
Species Human (Homo sapiens) [TaxId:9606] [54937] (7 PDB entries) |
Species Mouse (Mus musculus) [TaxId:10090] [256391] (1 PDB entry) |
Splicing factor U2B'' [54934] (1 species) |
Species Human (Homo sapiens) [TaxId:9606] [54935] (1 PDB entry) |
Splicing factor, arginine/serine-rich 1, SFRS1 [143346] (2 species) |
Species Human (Homo sapiens) [TaxId:9606] [143347] (3 PDB entries) Uniprot Q07955 1-95 |
Species Mouse (Mus musculus) [TaxId:10090] [143348] (1 PDB entry) Uniprot Q6PDM2 112-206 |
Splicing factor, arginine/serine-rich 9 (SFRS9) [117965] (1 species) |
Species Mouse (Mus musculus) [TaxId:10090] [117966] (1 PDB entry) Uniprot Q9D0B0 104-188 |
Synaptojanin 2 [102985] (1 species) |
Species Human (Homo sapiens) [TaxId:9606] [102986] (1 PDB entry) |
TAR DNA-binding protein 43, TDP-43 [117957] (1 species) |
Species Human (Homo sapiens) [TaxId:9606] [117958] (2 PDB entries) Uniprot Q13148 193-267 |
U4/U6 snRNA-associated-splicing factor PRP24 [143338] (1 species) contains three RBDs |
Species Baker's yeast (Saccharomyces cerevisiae) [TaxId:4932] [143339] (2 PDB entries) Uniprot P49960 116-196! Uniprot P49960 206-291! Uniprot P49960 41-115 |
automated matches [190332] (3 species) not a true protein |
Species Caenorhabditis elegans [TaxId:6239] [258944] (3 PDB entries) |
Species Human (Homo sapiens) [TaxId:9606] [187155] (22 PDB entries) |
Species Mouse (Mus musculus) [TaxId:10090] [188825] (3 PDB entries) |
Timeline for Family d.58.7.1: Canonical RBD: