Lineage for Family d.58.7.1: Canonical RBD

  1. Root: SCOP 1.73
  2. 713694Class d: Alpha and beta proteins (a+b) [53931] (334 folds)
  3. 723373Fold d.58: Ferredoxin-like [54861] (55 superfamilies)
    alpha+beta sandwich with antiparallel beta-sheet; (beta-alpha-beta)x2
  4. 724300Superfamily d.58.7: RNA-binding domain, RBD [54928] (4 families) (S)
  5. 724301Family d.58.7.1: Canonical RBD [54929] (67 proteins)

Proteins:

  1. 724302Alkylation repair AlkB homolog 8, ALKBH8 [143334] (1 species)
  2. 724305APOBEC1 stimulating protein [143326] (1 species)
  3. 724308Arginine/serine-rich splicing factor 10 [143312] (1 species)
  4. 724311Ataxin-2-binding protein 1 [143292] (1 species)
  5. 724314Calcipressin-1 [117953] (1 species)
  6. 724317CBP20, 20KDa nuclear cap-binding protein [64274] (1 species)
  7. 724328Cleavage stimulation factor, 64 kda subunit [102983] (1 species)
  8. 724331Cold-inducible RNA-binding protein [143300] (1 species)
  9. 724334CUG triplet repeat RNA-binding protein 1 [143336] (1 species)
  10. 724337E3 ubiquitin protein ligase CNOT4 [143294] (1 species)
    CCR4-NOT transcription complex subunit 4
  11. 724340Eukaryotic translation initiation factor 3 subunit 4 [143304] (1 species)
  12. 724343Eukaryotic translation initiation factor 4B [117973] (1 species)
  13. 724346Heterogeneous nuclear ribonucleoprotein d0 [54944] (1 species)
  14. 724350Heterogeneous nuclear ribonucleoprotein H' [117955] (1 species)
  15. 724354Heterogeneous nuclear ribonucleoprotein L-like [117951] (1 species)
  16. 724357Heterogeneous nuclear ribonucleoproteins A2/B1 [143342] (1 species)
  17. 724360Heterogeneous nuclear ribonucleoproteins C1/C2 [117961] (1 species)
  18. 724363HIV Tat-specific factor 1 [143290] (1 species)
  19. 724366Hu antigen C (Huc) [54940] (1 species)
  20. 724372Hu antigen D (Hud) [54942] (1 species)
  21. 724378Hypothetical protein FLJ20273 [143328] (1 species)
  22. 724381IGF-II mRNA-binding protein 2 isoform A [143344] (1 species)
  23. 724384Limkain-b1, LKAP [143324] (1 species)
    KIAA0430
  24. 724387Lupus LA protein [89940] (1 species)
  25. 724395Matrin 3 [143306] (1 species)
  26. 724399Musashi-1 [102981] (1 species)
  27. 724402Negative elongation factor E, NELF-E [143302] (1 species)
  28. 724406Neural RNA-binding protein Musashi-1 [54946] (1 species)
  29. 724410Non-POU domain-containing octamer-binding protein, NonO [143354] (1 species)
  30. 724413Nuclear factor Aly [102979] (1 species)
  31. 724416Nuclear ribonucleoprotein A1 (RNP A1, UP1) [54930] (1 species)
    duplication: contains two domains of this fold
  32. 724438Nuclear ribonucleoprotein D0 (AUF1) [75439] (1 species)
  33. 724443Nucleolin [54952] (1 species)
  34. 724451Nucleolysin TIAR [143298] (1 species)
  35. 724455Nucleoporin 35 [143330] (1 species)
  36. 724461Peptidyl-prolyl cis-trans isomerase E, N-terminal domain [143310] (1 species)
  37. 724464Poly(A)-binding protein [54948] (1 species)
  38. 724482Poly(A)-specific ribonuclease PARN [117967] (1 species)
  39. 724485Polypyrimidine tract-binding protein [54950] (1 species)
  40. 724497Polypyrimidine tract-binding protein 2, PTBP2 [143332] (1 species)
  41. 724500Pre-mRNA branch site protein p14 [143316] (1 species)
  42. 724506Probable RNA-binding protein 19, Rbm19 [117969] (1 species)
  43. 724512Probable RNA-binding protein KIAA1579 [117963] (1 species)
  44. 724515Putative RNA-binding protein 15B, Rbm15b [117971] (1 species)
  45. 724518Ribonucleoprotein PTB-binding 1, Raver-1 [143308] (1 species)
  46. 724521RNA binding protein 23 [143352] (1 species)
  47. 724524RNA-binding motif, single-stranded-interacting protein 1, RBMS1 [143356] (1 species)
  48. 724527RNA-binding motif, single-stranded-interacting protein 2, RBMS2 [143320] (1 species)
  49. 724530RNA-binding protein 12 [143349] (2 species)
    3rd RBD
    1. 724531Species Human (Homo sapiens) [TaxId:9606] [143350] (2 PDB entries)
    2. 724534Species Mouse (Mus musculus) [TaxId:10090] [143351] (1 PDB entry)
  50. 724536RNA-binding protein 28 [143358] (1 species)
  51. 724539RNA-binding protein 41, RBM41 [143296] (1 species)
  52. 724542RNA-binding protein 8 [89938] (2 species)
    1. 724543Species Fruit fly (Drosophila melanogaster) [TaxId:7227] [89939] (3 PDB entries)
      CG8781 protein
    2. 724548Species Human (Homo sapiens) [TaxId:9606] [102978] (4 PDB entries)
      RBM8A, Y14
  53. 724556RNA-binding protein 9 [143314] (1 species)
  54. 724559RNA-binding protein EWS [143340] (1 species)
  55. 724562RNA-binding protein Raly (Autoantigen p542) [117959] (1 species)
  56. 724565RNA-binding protein UBP1 [143322] (1 species)
  57. 724568RNA-binding region containing protein 1 [143360] (1 species)
  58. 724571Sex-lethal protein [54938] (1 species)
  59. 724585Splicesomal U1A protein [54932] (1 species)
    duplication: contains two domains of this fold
  60. 724627Splicing factor 3B subunit 4 [143318] (1 species)
  61. 724631Splicing factor U2AF 65 KDa subunit [54936] (1 species)
  62. 724637Splicing factor U2B'' [54934] (1 species)
  63. 724641Splicing factor, arginine/serine-rich 1, SFRS1 [143346] (2 species)
    1. 724642Species Human (Homo sapiens) [TaxId:9606] [143347] (1 PDB entry)
    2. 724644Species Mouse (Mus musculus) [TaxId:10090] [143348] (1 PDB entry)
  64. 724646Splicing factor, arginine/serine-rich 9 (SFRS9) [117965] (1 species)
  65. 724649Synaptojanin 2 [102985] (1 species)
  66. 724652TAR DNA-binding protein 43, TDP-43 [117957] (1 species)
  67. 724656U4/U6 snRNA-associated-splicing factor PRP24 [143338] (1 species)
    contains three RBDs

More info for Family d.58.7.1: Canonical RBD

Timeline for Family d.58.7.1: Canonical RBD: