SCOP 1.69: Family d.58.7.1: Canonical RBD

Lineage for Family d.58.7.1: Canonical RBD

1. Root: SCOP 1.69

2. Class d: Alpha and beta proteins (a+b) [53931] (279 folds)

3. Fold d.58: Ferredoxin-like [54861] (49 superfamilies)
   alpha+beta sandwich with antiparallel beta-sheet; (beta-alpha-beta)x2

4. Superfamily d.58.7: RNA-binding domain, RBD [54928] (4 families)

5. Family d.58.7.1: Canonical RBD [54929] (20 proteins)

Proteins:

1. CBP20, 20KDa nuclear cap-binding protein [64274] (1 species)

   • Species Human (Homo sapiens) [TaxId:9606] [64275] (6 PDB entries)

2. Cleavage stimulation factor, 64 kda subunit [102983] (1 species)

   • Species Human (Homo sapiens) [TaxId:9606] [102984] (1 PDB entry)

3. Heterogeneous nuclear ribonucleoprotein d0 [54944] (1 species)

   • Species Human (Homo sapiens) [TaxId:9606] [54945] (2 PDB entries)

4. Hu antigen C (Huc) [54940] (1 species)

   • Species Mouse (Mus musculus) [TaxId:10090] [54941] (3 PDB entries)

5. Hu antigen D (Hud) [54942] (1 species)

   • Species Human (Homo sapiens) [TaxId:9606] [54943] (2 PDB entries)

6. Lupus LA protein [89940] (1 species)

   • Species Human (Homo sapiens) [TaxId:9606] [89941] (2 PDB entries)

7. Musashi-1 [102981] (1 species)

   • Species Mouse (Mus musculus) [TaxId:10090] [102982] (1 PDB entry)

8. Neural RNA-binding protein Musashi-1 [54946] (1 species)

   • Species Mouse (Mus musculus) [TaxId:10090] [54947] (2 PDB entries)

9. Nuclear factor Aly [102979] (1 species)

   • Species Mouse (Mus musculus) [TaxId:10090] [102980] (1 PDB entry)

10. Nuclear ribonucleoprotein A1 (RNP A1, UP1) [54930] (1 species)
    duplication: contains two domains of this fold

    • Species Human (Homo sapiens) [TaxId:9606] [54931] (14 PDB entries)

11. Nuclear ribonucleoprotein D0 (AUF1) [75439] (1 species)

    • Species Human (Homo sapiens) [TaxId:9606] [75440] (1 PDB entry)

12. Nucleolin [54952] (1 species)

    • Species Golden hamster (Mesocricetus auratus) [TaxId:10036] [54953] (4 PDB entries)

13. Poly(A)-binding protein [54948] (1 species)

    • Species Human (Homo sapiens) [TaxId:9606] [54949] (1 PDB entry)

14. Polypyrimidine tract-binding protein [54950] (1 species)

    • Species Human (Homo sapiens) [TaxId:9606] [54951] (3 PDB entries)

15. RNA-binding protein 8 [89938] (2 species)

    1. Species Fruit fly (Drosophila melanogaster) [TaxId:7227] [89939] (3 PDB entries)
       CG8781 protein

    2. Species Human (Homo sapiens) [TaxId:9606] [102978] (1 PDB entry)
       RBM8A, Y14

16. Sex-lethal protein [54938] (1 species)

    • Species Drosophila melanogaster [TaxId:7227] [54939] (4 PDB entries)

17. Splicesomal U1A protein [54932] (1 species)
    duplication: contains two domains of this fold

    • Species Human (Homo sapiens) [TaxId:9606] [54933] (24 PDB entries)

18. Splicing factor U2AF 65 KDa subunit [54936] (1 species)

    • Species Human (Homo sapiens) [TaxId:9606] [54937] (4 PDB entries)

19. Splicing factor U2B'' [54934] (1 species)

    • Species Human (Homo sapiens) [TaxId:9606] [54935] (1 PDB entry)

20. Synaptojanin 2 [102985] (1 species)

    • Species Human (Homo sapiens) [TaxId:9606] [102986] (1 PDB entry)

More info for Family d.58.7.1: Canonical RBD

Timeline for Family d.58.7.1: Canonical RBD:

• Family d.58.7.1: Canonical RBD first appeared (with stable ids) in SCOP 1.55
  
• Family d.58.7.1: Canonical RBD appears in SCOP 1.67
  
• Family d.58.7.1: Canonical RBD appears in SCOP 1.71
  
• Family d.58.7.1: Canonical RBD appears in the current release, SCOPe 2.08