Lineage for Protein: Nucleoside diphosphate kinase, NDK

  1. Root: SCOPe 2.04
  2. 1631855Class d: Alpha and beta proteins (a+b) [53931] (380 folds)
  3. 1650133Fold d.58: Ferredoxin-like [54861] (59 superfamilies)
    alpha+beta sandwich with antiparallel beta-sheet; (beta-alpha-beta)x2
  4. 1651587Superfamily d.58.6: Nucleoside diphosphate kinase, NDK [54919] (2 families) (S)
  5. 1651588Family d.58.6.1: Nucleoside diphosphate kinase, NDK [54920] (2 proteins)
  6. 1651589Protein Nucleoside diphosphate kinase, NDK [54921] (23 species)

Species:

  1. 1651590Acanthamoeba polyphaga mimivirus [TaxId:212035] [224931] (1 PDB entry)
  2. 1651597Bacillus halodenitrificans [TaxId:1482] [89937] (1 PDB entry)
  3. 1651599Cow (Bos taurus) [TaxId:9913] [54924] (2 PDB entries)
    1. Domains for 1be4:
      1. 1651600Domain d1be4a_: 1be4 A: [39090]
        complexed with pcg
      2. 1651601Domain d1be4b_: 1be4 B: [39091]
        complexed with pcg
      3. 1651602Domain d1be4c_: 1be4 C: [39092]
        complexed with pcg
    2. Domains for 1bhn:
      1. 1651603Domain d1bhna_: 1bhn A: [39093]
        complexed with 35g
      2. 1651604Domain d1bhnb_: 1bhn B: [39094]
        complexed with 35g
      3. 1651605Domain d1bhnc_: 1bhn C: [39095]
        complexed with 35g
      4. 1651606Domain d1bhnd_: 1bhn D: [39096]
        complexed with 35g
      5. 1651607Domain d1bhne_: 1bhn E: [39097]
        complexed with 35g
      6. 1651608Domain d1bhnf_: 1bhn F: [39098]
        complexed with 35g
  4. 1651609Escherichia coli [TaxId:562] [187827] (1 PDB entry)
  5. 1651616Fruit fly (Drosophila melanogaster) [TaxId:7227] [54926] (2 PDB entries)
    1. Domains for 1ndl:
      1. 1651620Domain d1ndla_: 1ndl A: [39138]
      2. 1651621Domain d1ndlb_: 1ndl B: [39139]
      3. 1651622Domain d1ndlc_: 1ndl C: [39140]
    2. Domains for 1nsq:
      1. 1651617Domain d1nsqa_: 1nsq A: [39135]
      2. 1651618Domain d1nsqb_: 1nsq B: [39136]
      3. 1651619Domain d1nsqc_: 1nsq C: [39137]
  6. 1651623Haloarcula quadrata [TaxId:182779] [225752] (1 PDB entry)
  7. 1651628Halobacterium salinarum [TaxId:2242] [143288] (2 PDB entries)
    Uniprot P61136 4-158
    1. Domains for 2az1:
      1. 1651638Domain d2az1a1: 2az1 A:4-158 [127580]
        complexed with ca
      2. 1651639Domain d2az1b_: 2az1 B: [127581]
        automated match to d2az1a1
        complexed with ca
      3. 1651640Domain d2az1c_: 2az1 C: [127582]
        automated match to d2az1a1
        complexed with ca
      4. 1651641Domain d2az1d_: 2az1 D: [127583]
        automated match to d2az1a1
        complexed with ca
      5. 1651642Domain d2az1e_: 2az1 E: [127584]
        automated match to d2az1a1
        complexed with ca
      6. 1651643Domain d2az1f_: 2az1 F: [127585]
        automated match to d2az1a1
        complexed with ca
    2. Domains for 2az3:
      1. 1651629Domain d2az3a_: 2az3 A: [127588]
        automated match to d1ndla_
        complexed with cdp, mg
      2. 1651630Domain d2az3b_: 2az3 B: [127589]
        automated match to d1ndla_
        complexed with cdp, mg
      3. 1651631Domain d2az3c_: 2az3 C: [127590]
        automated match to d1ndla_
        complexed with cdp, mg
      4. 1651632Domain d2az3d_: 2az3 D: [127591]
        automated match to d1ndla_
        complexed with cdp, mg
      5. 1651633Domain d2az3e_: 2az3 E: [127592]
        automated match to d1ndla_
        complexed with cdp, mg
      6. 1651634Domain d2az3f_: 2az3 F: [127593]
        automated match to d1ndla_
        complexed with cdp, mg
      7. 1651635Domain d2az3g_: 2az3 G: [127594]
        automated match to d1ndla_
        complexed with cdp, mg
      8. 1651636Domain d2az3h_: 2az3 H: [127595]
        automated match to d1ndla_
        complexed with cdp, mg
      9. 1651637Domain d2az3i_: 2az3 I: [127596]
        automated match to d1ndla_
        complexed with cdp, mg
  8. 1651644Human (Homo sapiens) [TaxId:9606] [54922] (5 PDB entries)
    1. Domains for 1nsk:
      1. 1651669Domain d1nskl_: 1nsk L: [39083]
        CASP1
      2. 1651670Domain d1nskn_: 1nsk N: [39086]
        CASP1
      3. 1651671Domain d1nsko_: 1nsk O: [39087]
        CASP1
      4. 1651672Domain d1nskr_: 1nsk R: [39082]
        CASP1
      5. 1651673Domain d1nskt_: 1nsk T: [39084]
        CASP1
      6. 1651674Domain d1nsku_: 1nsk U: [39085]
        CASP1
    2. Domains for 1nue:
      1. 1651663Domain d1nuea_: 1nue A: [39076]
        complexed with gdp, mg
      2. 1651664Domain d1nueb_: 1nue B: [39077]
        complexed with gdp, mg
      3. 1651665Domain d1nuec_: 1nue C: [39078]
        complexed with gdp, mg
      4. 1651666Domain d1nued_: 1nue D: [39079]
        complexed with gdp, mg
      5. 1651667Domain d1nuee_: 1nue E: [39080]
        complexed with gdp, mg
      6. 1651668Domain d1nuef_: 1nue F: [39081]
        complexed with gdp, mg
    3. Domains for 3bbb:
      1. 1651645Domain d3bbba_: 3bbb A: [155055]
        automated match to d1nuea_
        protein/DNA complex; complexed with da, dg
      2. 1651646Domain d3bbbb_: 3bbb B: [155056]
        automated match to d1nuea_
        protein/DNA complex; complexed with da, dg
      3. 1651647Domain d3bbbc_: 3bbb C: [155057]
        automated match to d1nuea_
        protein/DNA complex; complexed with da, dg
      4. 1651648Domain d3bbbd_: 3bbb D: [155058]
        automated match to d1nuea_
        protein/DNA complex; complexed with da, dg
      5. 1651649Domain d3bbbe_: 3bbb E: [155059]
        automated match to d1nuea_
        protein/DNA complex; complexed with da, dg
      6. 1651650Domain d3bbbf_: 3bbb F: [155060]
        automated match to d1nuea_
        protein/DNA complex; complexed with da, dg
    4. Domains for 3bbc:
      1. 1651651Domain d3bbca_: 3bbc A: [192707]
        automated match to d3bbcd_
        mutant
      2. 1651652Domain d3bbcb_: 3bbc B: [192710]
        automated match to d3bbcd_
        mutant
      3. 1651653Domain d3bbcc_: 3bbc C: [192709]
        automated match to d3bbcd_
        mutant
      4. 1651654Domain d3bbcd_: 3bbc D: [172532]
        automated match to d1nuea_
        mutant
      5. 1651655Domain d3bbce_: 3bbc E: [192711]
        automated match to d3bbcd_
        mutant
      6. 1651656Domain d3bbcf_: 3bbc F: [192708]
        automated match to d3bbcd_
        mutant
    5. Domains for 3bbf:
      1. 1651657Domain d3bbfa_: 3bbf A: [155065]
        automated match to d1nuea_
        protein/DNA complex; complexed with dtt, gdp, mg
      2. 1651658Domain d3bbfb_: 3bbf B: [155066]
        automated match to d1nuea_
        protein/DNA complex; complexed with dtt, gdp, mg
      3. 1651659Domain d3bbfc_: 3bbf C: [155067]
        automated match to d1nuea_
        protein/DNA complex; complexed with dtt, gdp, mg
      4. 1651660Domain d3bbfd_: 3bbf D: [155068]
        automated match to d1nuea_
        protein/DNA complex; complexed with dtt, gdp, mg
      5. 1651661Domain d3bbfe_: 3bbf E: [155069]
        automated match to d1nuea_
        protein/DNA complex; complexed with dtt, gdp, mg
      6. 1651662Domain d3bbff_: 3bbf F: [155070]
        automated match to d1nuea_
        protein/DNA complex; complexed with dtt, gdp, mg
  9. 1651675Human (Homo sapiens), NDK3 [TaxId:9606] [143283] (1 PDB entry)
    Uniprot Q13232 18-169
  10. 1651679Human (Homo sapiens), NDK4 [TaxId:9606] [54923] (1 PDB entry)
  11. 1651682Human (Homo sapiens), NDKA [TaxId:9606] [75437] (6 PDB entries)
    1. Domains for 1jxv:
      1. 1651689Domain d1jxva_: 1jxv A: [71932]
      2. 1651690Domain d1jxvb_: 1jxv B: [71933]
      3. 1651691Domain d1jxvc_: 1jxv C: [71934]
      4. 1651692Domain d1jxvd_: 1jxv D: [71935]
      5. 1651693Domain d1jxve_: 1jxv E: [71936]
      6. 1651694Domain d1jxvf_: 1jxv F: [71937]
    2. Domains for 1ucn:
      1. 1651683Domain d1ucna_: 1ucn A: [99183]
        complexed with adp, ca, po4, trs
      2. 1651684Domain d1ucnb_: 1ucn B: [99184]
        complexed with adp, ca, po4, trs
      3. 1651685Domain d1ucnc_: 1ucn C: [99185]
        complexed with adp, ca, po4, trs
    3. Domains for 2hvd:
      1. 1651695Domain d2hvda_: 2hvd A: [136801]
        automated match to d1jxva_
        complexed with adp
      2. 1651696Domain d2hvdb_: 2hvd B: [136802]
        automated match to d1jxva_
        complexed with adp
      3. 1651697Domain d2hvdc_: 2hvd C: [136803]
        automated match to d1jxva_
        complexed with adp
    4. Domains for 2hve:
      1. 1651698Domain d2hvea_: 2hve A: [165306]
        automated match to d1jxva_
        complexed with adp; mutant
      2. 1651699Domain d2hveb_: 2hve B: [165307]
        automated match to d1jxva_
        complexed with adp; mutant
      3. 1651700Domain d2hvec_: 2hve C: [165308]
        automated match to d1jxva_
        complexed with adp; mutant
    5. Domains for 3l7u:
      1. 1651686Domain d3l7ua_: 3l7u A: [212755]
        automated match to d4enoa_
        complexed with po4
      2. 1651687Domain d3l7ub_: 3l7u B: [212756]
        automated match to d4enoa_
        complexed with po4
      3. 1651688Domain d3l7uc_: 3l7u C: [212757]
        automated match to d4enoa_
        complexed with po4
    6. Domains for 4eno:
      1. 1651701Domain d4enoa_: 4eno A: [196709]
        automated match to d2hvda_
        complexed with po4
      2. 1651702Domain d4enob_: 4eno B: [196708]
        automated match to d2hvda_
        complexed with po4
  12. 1651703Mimivirus [TaxId:315393] [143286] (2 PDB entries)
    Uniprot Q5UQL3 2-137
    1. Domains for 2b8p:
      1. 1651710Domain d2b8pa1: 2b8p A:2-129 [128101]
        complexed with so4
      2. 1651711Domain d2b8pb1: 2b8p B:2-129 [128102]
        automatically matched to 2B8P A:2-129
        complexed with so4
    2. Domains for 2b8q:
      1. 1651704Domain d2b8qa1: 2b8q A:2-129 [128103]
        automatically matched to 2B8P A:2-129
        complexed with mg, po4, tyd
      2. 1651705Domain d2b8qb1: 2b8q B:2-129 [128104]
        automatically matched to 2B8P A:2-129
        complexed with mg, po4, tyd
      3. 1651706Domain d2b8qc1: 2b8q C:2-129 [128105]
        automatically matched to 2B8P A:2-129
        complexed with mg, po4, tyd
      4. 1651707Domain d2b8qd1: 2b8q D:2-129 [128106]
        automatically matched to 2B8P A:2-129
        complexed with mg, po4, tyd
      5. 1651708Domain d2b8qe1: 2b8q E:2-129 [128107]
        automatically matched to 2B8P A:2-129
        complexed with mg, po4, tyd
      6. 1651709Domain d2b8qf1: 2b8q F:2-129 [128108]
        automatically matched to 2B8P A:2-129
        complexed with mg, po4, tyd
  13. 1651712Mycobacterium tuberculosis [TaxId:1773] [75438] (1 PDB entry)
  14. 1651719Myxococcus xanthus [TaxId:34] [54927] (3 PDB entries)
    1. Domains for 1nhk:
      1. 1651720Domain d1nhkl_: 1nhk L: [39142]
        complexed with cmp
      2. 1651721Domain d1nhkr_: 1nhk R: [39141]
        complexed with cmp
    2. Domains for 1nlk:
      1. 1651724Domain d1nlkl_: 1nlk L: [39146]
        complexed with adp, mg
      2. 1651725Domain d1nlkr_: 1nlk R: [39145]
        complexed with adp, mg
    3. Domains for 2nck:
      1. 1651722Domain d2nckl_: 2nck L: [39144]
      2. 1651723Domain d2nckr_: 2nck R: [39143]
  15. 1651726Pea (Pisum sativum) [TaxId:3888] [117948] (1 PDB entry)
    Uniprot Q9SP13 81-231
  16. 1651733Plasmodium falciparum, isolate 3D7 [TaxId:5833] [117947] (1 PDB entry)
    Uniprot Q8ID43
  17. 1651740Pyrobaculum aerophilum [TaxId:13773] [143287] (1 PDB entry)
    Uniprot Q8ZWY4 2-183
  18. 1651744Pyrococcus horikoshii [TaxId:53953] [143284] (6 PDB entries)
    Uniprot O58429 3-155
    1. Domain for 2cwk:
    2. Domains for 2dxd:
      1. 1651751Domain d2dxda_: 2dxd A: [131868]
        automated match to d2cwka1
        complexed with anp, cl
      2. 1651752Domain d2dxdb_: 2dxd B: [131869]
        automated match to d2cwka1
        complexed with anp, cl
    3. Domains for 2dxe:
      1. 1651747Domain d2dxea_: 2dxe A: [131870]
        automated match to d2cwka1
        complexed with cl, gdp, mg
      2. 1651748Domain d2dxeb_: 2dxe B: [131871]
        automated match to d2cwka1
        complexed with cl, gdp, mg
    4. Domains for 2dxf:
      1. 1651749Domain d2dxfa_: 2dxf A: [131872]
        automated match to d2cwka1
        complexed with cl, gnp
      2. 1651750Domain d2dxfb_: 2dxf B: [131873]
        automated match to d2cwka1
        complexed with cl, gnp
    5. Domains for 2dy9:
      1. 1651754Domain d2dy9a_: 2dy9 A: [131893]
        automated match to d2cwka1
        complexed with adp, cl, mg
      2. 1651755Domain d2dy9b_: 2dy9 B: [131894]
        automated match to d2cwka1
        complexed with adp, cl, mg
    6. Domains for 2dya:
      1. 1651745Domain d2dyaa_: 2dya A: [131895]
        automated match to d2cwka1
        complexed with adp, cl, mg
      2. 1651746Domain d2dyab_: 2dya B: [131896]
        automated match to d2cwka1
        complexed with adp, cl, mg
  19. 1651756Rice (Oryza sativa) [TaxId:4530] [143285] (1 PDB entry)
    Uniprot Q07661 1-148
  20. 1651758Slime mold (Dictyostelium discoideum) [TaxId:44689] [54925] (21 PDB entries)
    1. Domains for 1b4s:
      1. 1651785Domain d1b4sa_: 1b4s A: [39122]
        complexed with adp, mg, po4; mutant
      2. 1651786Domain d1b4sb_: 1b4s B: [39123]
        complexed with adp, mg, po4; mutant
      3. 1651787Domain d1b4sc_: 1b4s C: [39124]
        complexed with adp, mg, po4; mutant
    2. Domains for 1b99:
      1. 1651789Domain d1b99a_: 1b99 A: [39126]
        complexed with fup, pop
      2. 1651790Domain d1b99b_: 1b99 B: [39127]
        complexed with fup, pop
      3. 1651791Domain d1b99c_: 1b99 C: [39128]
        complexed with fup, pop
      4. 1651792Domain d1b99d_: 1b99 D: [39129]
        complexed with fup, pop
      5. 1651793Domain d1b99e_: 1b99 E: [39130]
        complexed with fup, pop
      6. 1651794Domain d1b99f_: 1b99 F: [39131]
        complexed with fup, pop
    3. Domains for 1bux:
      1. 1651798Domain d1buxa_: 1bux A: [39132]
        complexed with pps
      2. 1651799Domain d1buxb_: 1bux B: [39133]
        complexed with pps
      3. 1651800Domain d1buxc_: 1bux C: [39134]
        complexed with pps
    4. Domains for 1f3f:
      1. 1651761Domain d1f3fa_: 1f3f A: [39101]
        complexed with d4d, d4t, mg, po4
      2. 1651762Domain d1f3fb_: 1f3f B: [39102]
        complexed with d4d, d4t, mg, po4
      3. 1651763Domain d1f3fc_: 1f3f C: [39103]
        complexed with d4d, d4t, mg, po4
    5. Domains for 1f6t:
      1. 1651771Domain d1f6ta_: 1f6t A: [39110]
        complexed with mg, tbd
      2. 1651772Domain d1f6tb_: 1f6t B: [39111]
        complexed with mg, tbd
      3. 1651773Domain d1f6tc_: 1f6t C: [39112]
        complexed with mg, tbd
    6. Domain for 1hhq:
    7. Domains for 1hiy:
      1. 1651795Domain d1hiya_: 1hiy A: [61068]
        complexed with 3an
      2. 1651796Domain d1hiyb_: 1hiy B: [61069]
        complexed with 3an
      3. 1651797Domain d1hiyc_: 1hiy C: [61070]
        complexed with 3an
    8. Domain for 1hlw:
    9. Domains for 1kdn:
      1. 1651765Domain d1kdna_: 1kdn A: [39105]
        complexed with adp, af3, mg
      2. 1651766Domain d1kdnb_: 1kdn B: [39106]
        complexed with adp, af3, mg
      3. 1651767Domain d1kdnc_: 1kdn C: [39107]
        complexed with adp, af3, mg
    10. Domain for 1leo:
    11. Domains for 1lwx:
      1. 1651782Domain d1lwxa_: 1lwx A: [39119]
        complexed with azd, mg
      2. 1651783Domain d1lwxb_: 1lwx B: [39120]
        complexed with azd, mg
      3. 1651784Domain d1lwxc_: 1lwx C: [39121]
        complexed with azd, mg
    12. Domains for 1mn7:
      1. 1651780Domain d1mn7a_: 1mn7 A: [79316]
        complexed with abt, mg; mutant
      2. 1651781Domain d1mn7b_: 1mn7 B: [79317]
        complexed with abt, mg; mutant
    13. Domains for 1mn9:
      1. 1651801Domain d1mn9a_: 1mn9 A: [85025]
        complexed with mg, rtp; mutant
      2. 1651802Domain d1mn9b_: 1mn9 B: [85026]
        complexed with mg, rtp; mutant
      3. 1651803Domain d1mn9c_: 1mn9 C: [85027]
        complexed with mg, rtp; mutant
    14. Domain for 1ncl:
    15. Domain for 1ndc:
    16. Domain for 1ndk:
    17. Domains for 1ndp:
      1. 1651774Domain d1ndpa_: 1ndp A: [39113]
        complexed with adp, mg
      2. 1651775Domain d1ndpb_: 1ndp B: [39114]
        complexed with adp, mg
    18. Domain for 1npk:
    19. Domain for 1nsp:
    20. Domain for 1pae:
    21. Domains for 2bef:
      1. 1651776Domain d2befa_: 2bef A: [39115]
        complexed with adp, bef, mg
      2. 1651777Domain d2befb_: 2bef B: [39116]
        complexed with adp, bef, mg
      3. 1651778Domain d2befc_: 2bef C: [39117]
        complexed with adp, bef, mg
  21. 1651805Thale cress (Arabidopsis thaliana) [TaxId:3702] [117949] (1 PDB entry)
    Uniprot P39207
  22. 1651812Thale cress (Arabidopsis thaliana), chloroplast NDK2 [TaxId:3702] [117950] (2 PDB entries)
    Uniprot O64903 79-231
    1. Domains for 1s57:
      1. 1651813Domain d1s57a_: 1s57 A: [112028]
        complexed with epe, so4
      2. 1651814Domain d1s57b_: 1s57 B: [112029]
        complexed with epe, so4
      3. 1651815Domain d1s57c_: 1s57 C: [112030]
        complexed with epe, so4
      4. 1651816Domain d1s57d_: 1s57 D: [112031]
        complexed with epe, so4
      5. 1651817Domain d1s57e_: 1s57 E: [112032]
        complexed with epe, so4
      6. 1651818Domain d1s57f_: 1s57 F: [112033]
        complexed with epe, so4
    2. Domains for 1s59:
      1. 1651819Domain d1s59a_: 1s59 A: [112034]
        complexed with dgi, dgt
      2. 1651820Domain d1s59b_: 1s59 B: [112035]
        complexed with dgi, dgt
      3. 1651821Domain d1s59c_: 1s59 C: [112036]
        complexed with dgi, dgt
      4. 1651822Domain d1s59d_: 1s59 D: [112037]
        complexed with dgi, dgt
      5. 1651823Domain d1s59e_: 1s59 E: [112038]
        complexed with dgi, dgt
      6. 1651824Domain d1s59f_: 1s59 F: [112039]
        complexed with dgi, dgt
  23. 1651825Thermus thermophilus [TaxId:274] [143289] (3 PDB entries)
    Uniprot Q5SLV5 1-137
    1. Domains for 1wkj:
      1. 1651826Domain d1wkja1: 1wkj A:1-137 [120983]
      2. 1651827Domain d1wkjb_: 1wkj B: [120984]
        automated match to d1wkja1
    2. Domains for 1wkk:
      1. 1651830Domain d1wkka_: 1wkk A: [120985]
        automated match to d1wkja1
        complexed with gdp
      2. 1651831Domain d1wkkb_: 1wkk B: [120986]
        automated match to d1wkja1
        complexed with gdp
    3. Domains for 1wkl:
      1. 1651828Domain d1wkla_: 1wkl A: [120987]
        automated match to d1wkja1
        complexed with adp, atp, mg, phs
      2. 1651829Domain d1wklb_: 1wkl B: [120988]
        automated match to d1wkja1
        complexed with adp, atp, mg, phs

More info for Protein Nucleoside diphosphate kinase, NDK from d.58.6.1: Nucleoside diphosphate kinase, NDK

Timeline for Protein Nucleoside diphosphate kinase, NDK from d.58.6.1: Nucleoside diphosphate kinase, NDK: