Species:

1. Bacillus halodenitrificans [TaxId:1482] [89937] (1 PDB entry)

   • Domain for 1nb2:

     • Domain d1nb2a_: 1nb2 A: [85508]

2. Cow (Bos taurus) [TaxId:9913] [54924] (2 PDB entries)

   1. Domains for 1be4:

      1. Domain d1be4a_: 1be4 A: [39090] complexed with pcg

      2. Domain d1be4b_: 1be4 B: [39091] complexed with pcg

      3. Domain d1be4c_: 1be4 C: [39092] complexed with pcg

   2. Domains for 1bhn:

      1. Domain d1bhna_: 1bhn A: [39093] complexed with 35g

      2. Domain d1bhnb_: 1bhn B: [39094] complexed with 35g

      3. Domain d1bhnc_: 1bhn C: [39095] complexed with 35g

      4. Domain d1bhnd_: 1bhn D: [39096] complexed with 35g

      5. Domain d1bhne_: 1bhn E: [39097] complexed with 35g

      6. Domain d1bhnf_: 1bhn F: [39098] complexed with 35g

3. Escherichia coli [TaxId:562] [187827] (1 PDB entry)

   • Domains for 2hur:

     1. Domain d2hura_: 2hur A: [165288] automated match to d1nhkr_ complexed with so4

     2. Domain d2hurb_: 2hur B: [165289] automated match to d1nhkr_ complexed with so4

     3. Domain d2hurc_: 2hur C: [165290] automated match to d1nhkr_ complexed with so4

     4. Domain d2hurd_: 2hur D: [165291] automated match to d1nhkr_ complexed with so4

     5. Domain d2hure_: 2hur E: [165292] automated match to d1nhkr_ complexed with so4

     6. Domain d2hurf_: 2hur F: [165293] automated match to d1nhkr_ complexed with so4

4. Fruit fly (Drosophila melanogaster) [TaxId:7227] [54926] (2 PDB entries)

   1. Domains for 1ndl:

      1. Domain d1ndla_: 1ndl A: [39138]

      2. Domain d1ndlb_: 1ndl B: [39139]

      3. Domain d1ndlc_: 1ndl C: [39140]

   2. Domains for 1nsq:

      1. Domain d1nsqa_: 1nsq A: [39135]

      2. Domain d1nsqb_: 1nsq B: [39136]

      3. Domain d1nsqc_: 1nsq C: [39137]

5. Halobacterium salinarum [TaxId:2242] [143288] (2 PDB entries) Uniprot P61136 4-158

   1. Domains for 2az1:

      1. Domain d2az1a1: 2az1 A:4-158 [127580] complexed with ca

      2. Domain d2az1b1: 2az1 B:4-158 [127581] automatically matched to 2AZ1 A:4-158 complexed with ca

      3. Domain d2az1c1: 2az1 C:4-158 [127582] automatically matched to 2AZ1 A:4-158 complexed with ca

      4. Domain d2az1d1: 2az1 D:4-158 [127583] automatically matched to 2AZ1 A:4-158 complexed with ca

      5. Domain d2az1e1: 2az1 E:5-158 [127584] automatically matched to 2AZ1 A:4-158 complexed with ca

      6. Domain d2az1f1: 2az1 F:4-158 [127585] automatically matched to 2AZ1 A:4-158 complexed with ca

   2. Domains for 2az3:

      1. Domain d2az3a_: 2az3 A: [127588] automated match to d1ndla_ complexed with cdp, mg

      2. Domain d2az3b_: 2az3 B: [127589] automated match to d1ndla_ complexed with cdp, mg

      3. Domain d2az3c_: 2az3 C: [127590] automated match to d1ndla_ complexed with cdp, mg

      4. Domain d2az3d_: 2az3 D: [127591] automated match to d1ndla_ complexed with cdp, mg

      5. Domain d2az3e_: 2az3 E: [127592] automated match to d1ndla_ complexed with cdp, mg

      6. Domain d2az3f_: 2az3 F: [127593] automated match to d1ndla_ complexed with cdp, mg

      7. Domain d2az3g_: 2az3 G: [127594] automated match to d1ndla_ complexed with cdp, mg

      8. Domain d2az3h_: 2az3 H: [127595] automated match to d1ndla_ complexed with cdp, mg

      9. Domain d2az3i_: 2az3 I: [127596] automated match to d1ndla_ complexed with cdp, mg

6. Human (Homo sapiens) [TaxId:9606] [54922] (5 PDB entries)

   1. Domains for 1nsk:

      1. Domain d1nskl_: 1nsk L: [39083] CASP1

      2. Domain d1nskn_: 1nsk N: [39086] CASP1

      3. Domain d1nsko_: 1nsk O: [39087] CASP1

      4. Domain d1nskr_: 1nsk R: [39082] CASP1

      5. Domain d1nskt_: 1nsk T: [39084] CASP1

      6. Domain d1nsku_: 1nsk U: [39085] CASP1

   2. Domains for 1nue:

      1. Domain d1nuea_: 1nue A: [39076] complexed with gdp, mg

      2. Domain d1nueb_: 1nue B: [39077] complexed with gdp, mg

      3. Domain d1nuec_: 1nue C: [39078] complexed with gdp, mg

      4. Domain d1nued_: 1nue D: [39079] complexed with gdp, mg

      5. Domain d1nuee_: 1nue E: [39080] complexed with gdp, mg

      6. Domain d1nuef_: 1nue F: [39081] complexed with gdp, mg

   3. Domains for 3bbb:

      1. Domain d3bbba_: 3bbb A: [155055] automated match to d1nuea_ protein/DNA complex; complexed with da, dg

      2. Domain d3bbbb_: 3bbb B: [155056] automated match to d1nuea_ protein/DNA complex; complexed with da, dg

      3. Domain d3bbbc_: 3bbb C: [155057] automated match to d1nuea_ protein/DNA complex; complexed with da, dg

      4. Domain d3bbbd_: 3bbb D: [155058] automated match to d1nuea_ protein/DNA complex; complexed with da, dg

      5. Domain d3bbbe_: 3bbb E: [155059] automated match to d1nuea_ protein/DNA complex; complexed with da, dg

      6. Domain d3bbbf_: 3bbb F: [155060] automated match to d1nuea_ protein/DNA complex; complexed with da, dg

   4. Domains for 3bbc:

      1. Domain d3bbca_: 3bbc A: [192707] automated match to d3bbcd_ mutant

      2. Domain d3bbcb_: 3bbc B: [192710] automated match to d3bbcd_ mutant

      3. Domain d3bbcc_: 3bbc C: [192709] automated match to d3bbcd_ mutant

      4. Domain d3bbcd_: 3bbc D: [172532] automated match to d1nuea_ mutant

      5. Domain d3bbce_: 3bbc E: [192711] automated match to d3bbcd_ mutant

      6. Domain d3bbcf_: 3bbc F: [192708] automated match to d3bbcd_ mutant

   5. Domains for 3bbf:

      1. Domain d3bbfa_: 3bbf A: [155065] automated match to d1nuea_ protein/DNA complex; complexed with dtt, gdp, mg

      2. Domain d3bbfb_: 3bbf B: [155066] automated match to d1nuea_ protein/DNA complex; complexed with dtt, gdp, mg

      3. Domain d3bbfc_: 3bbf C: [155067] automated match to d1nuea_ protein/DNA complex; complexed with dtt, gdp, mg

      4. Domain d3bbfd_: 3bbf D: [155068] automated match to d1nuea_ protein/DNA complex; complexed with dtt, gdp, mg

      5. Domain d3bbfe_: 3bbf E: [155069] automated match to d1nuea_ protein/DNA complex; complexed with dtt, gdp, mg

      6. Domain d3bbff_: 3bbf F: [155070] automated match to d1nuea_ protein/DNA complex; complexed with dtt, gdp, mg

7. Human (Homo sapiens), NDK3 [TaxId:9606] [143283] (1 PDB entry) Uniprot Q13232 18-169

   • Domains for 1zs6:

     1. Domain d1zs6a1: 1zs6 A:18-169 [125590] complexed with adp

     2. Domain d1zs6b_: 1zs6 B: [125591] automated match to d1zs6a1 complexed with adp

     3. Domain d1zs6d_: 1zs6 D: [125592] automated match to d1zs6a1 complexed with adp

8. Human (Homo sapiens), NDK4 [TaxId:9606] [54923] (1 PDB entry)

   • Domains for 1ehw:

     1. Domain d1ehwa_: 1ehw A: [39088] complexed with so4

     2. Domain d1ehwb_: 1ehw B: [39089] complexed with so4

9. Human (Homo sapiens), NDKA [TaxId:9606] [75437] (5 PDB entries)

   1. Domains for 1jxv:

      1. Domain d1jxva_: 1jxv A: [71932]

      2. Domain d1jxvb_: 1jxv B: [71933]

      3. Domain d1jxvc_: 1jxv C: [71934]

      4. Domain d1jxvd_: 1jxv D: [71935]

      5. Domain d1jxve_: 1jxv E: [71936]

      6. Domain d1jxvf_: 1jxv F: [71937]

   2. Domains for 1ucn:

      1. Domain d1ucna_: 1ucn A: [99183] complexed with adp, ca, po4, trs

      2. Domain d1ucnb_: 1ucn B: [99184] complexed with adp, ca, po4, trs

      3. Domain d1ucnc_: 1ucn C: [99185] complexed with adp, ca, po4, trs

   3. Domains for 2hvd:

      1. Domain d2hvda_: 2hvd A: [136801] automated match to d1jxva_ complexed with adp

      2. Domain d2hvdb_: 2hvd B: [136802] automated match to d1jxva_ complexed with adp

      3. Domain d2hvdc_: 2hvd C: [136803] automated match to d1jxva_ complexed with adp

   4. Domains for 2hve:

      1. Domain d2hvea_: 2hve A: [165306] automated match to d1jxva_ complexed with adp; mutant

      2. Domain d2hveb_: 2hve B: [165307] automated match to d1jxva_ complexed with adp; mutant

      3. Domain d2hvec_: 2hve C: [165308] automated match to d1jxva_ complexed with adp; mutant

   5. Domains for 4eno:

      1. Domain d4enoa_: 4eno A: [196709] automated match to d2hvda_ complexed with po4

      2. Domain d4enob_: 4eno B: [196708] automated match to d2hvda_ complexed with po4

10. Mimivirus [TaxId:315393] [143286] (2 PDB entries) Uniprot Q5UQL3 2-137

    1. Domains for 2b8p:

       1. Domain d2b8pa1: 2b8p A:2-129 [128101] complexed with so4

       2. Domain d2b8pb1: 2b8p B:2-129 [128102] automatically matched to 2B8P A:2-129 complexed with so4

    2. Domains for 2b8q:

       1. Domain d2b8qa1: 2b8q A:2-129 [128103] automatically matched to 2B8P A:2-129 complexed with mg, po4, tyd

       2. Domain d2b8qb1: 2b8q B:2-129 [128104] automatically matched to 2B8P A:2-129 complexed with mg, po4, tyd

       3. Domain d2b8qc1: 2b8q C:2-129 [128105] automatically matched to 2B8P A:2-129 complexed with mg, po4, tyd

       4. Domain d2b8qd1: 2b8q D:2-129 [128106] automatically matched to 2B8P A:2-129 complexed with mg, po4, tyd

       5. Domain d2b8qe1: 2b8q E:2-129 [128107] automatically matched to 2B8P A:2-129 complexed with mg, po4, tyd

       6. Domain d2b8qf1: 2b8q F:2-129 [128108] automatically matched to 2B8P A:2-129 complexed with mg, po4, tyd

11. Mycobacterium tuberculosis [TaxId:1773] [75438] (1 PDB entry)

    • Domains for 1k44:

      1. Domain d1k44a_: 1k44 A: [72033]

      2. Domain d1k44b_: 1k44 B: [72034]

      3. Domain d1k44c_: 1k44 C: [72035]

      4. Domain d1k44d_: 1k44 D: [72036]

      5. Domain d1k44e_: 1k44 E: [72037]

      6. Domain d1k44f_: 1k44 F: [72038]

12. Myxococcus xanthus [TaxId:34] [54927] (3 PDB entries)

    1. Domains for 1nhk:

       1. Domain d1nhkl_: 1nhk L: [39142] complexed with cmp

       2. Domain d1nhkr_: 1nhk R: [39141] complexed with cmp

    2. Domains for 1nlk:

       1. Domain d1nlkl_: 1nlk L: [39146] complexed with adp, mg

       2. Domain d1nlkr_: 1nlk R: [39145] complexed with adp, mg

    3. Domains for 2nck:

       1. Domain d2nckl_: 2nck L: [39144]

       2. Domain d2nckr_: 2nck R: [39143]

13. Pea (Pisum sativum) [TaxId:3888] [117948] (1 PDB entry) Uniprot Q9SP13 81-231

    • Domains for 1w7w:

      1. Domain d1w7wa_: 1w7w A: [114327] mutant

      2. Domain d1w7wb_: 1w7w B: [114328] mutant

      3. Domain d1w7wc_: 1w7w C: [114329] mutant

      4. Domain d1w7wd_: 1w7w D: [114330] mutant

      5. Domain d1w7we_: 1w7w E: [114331] mutant

      6. Domain d1w7wf_: 1w7w F: [114332] mutant

14. Plasmodium falciparum, isolate 3D7 [TaxId:5833] [117947] (1 PDB entry) Uniprot Q8ID43

    • Domains for 1xiq:

      1. Domain d1xiqa_: 1xiq A: [115361]

      2. Domain d1xiqb_: 1xiq B: [115362]

      3. Domain d1xiqc_: 1xiq C: [115363]

      4. Domain d1xiqd_: 1xiq D: [115364]

      5. Domain d1xiqe_: 1xiq E: [115365]

      6. Domain d1xiqf_: 1xiq F: [115366]

15. Pyrobaculum aerophilum [TaxId:13773] [143287] (1 PDB entry) Uniprot Q8ZWY4 2-183

    • Domains for 1xqi:

      1. Domain d1xqia1: 1xqi A:14-195 [122237] complexed with pge, trs

      2. Domain d1xqib1: 1xqi B:14-195 [122238] automatically matched to 1XQI A:14-195 complexed with pge, trs

      3. Domain d1xqic1: 1xqi C:14-195 [122239] automatically matched to 1XQI A:14-195 complexed with pge, trs

16. Pyrococcus horikoshii [TaxId:53953] [143284] (6 PDB entries) Uniprot O58429 3-155

    1. Domain for 2cwk:

       • Domain d2cwka1: 2cwk A:6-158 [130925] Other proteins in same PDB: d2cwkb_

    2. Domains for 2dxd:

       1. Domain d2dxda_: 2dxd A: [131868] automated match to d2cwka1 complexed with anp, cl

       2. Domain d2dxdb_: 2dxd B: [131869] automated match to d2cwka1 complexed with anp, cl

    3. Domains for 2dxe:

       1. Domain d2dxea_: 2dxe A: [131870] automated match to d2cwka1 complexed with cl, gdp, mg

       2. Domain d2dxeb_: 2dxe B: [131871] automated match to d2cwka1 complexed with cl, gdp, mg

    4. Domains for 2dxf:

       1. Domain d2dxfa_: 2dxf A: [131872] automated match to d2cwka1 complexed with cl, gnp

       2. Domain d2dxfb_: 2dxf B: [131873] automated match to d2cwka1 complexed with cl, gnp

    5. Domains for 2dy9:

       1. Domain d2dy9a_: 2dy9 A: [131893] automated match to d2cwka1 complexed with adp, cl, mg

       2. Domain d2dy9b_: 2dy9 B: [131894] automated match to d2cwka1 complexed with adp, cl, mg

    6. Domains for 2dya:

       1. Domain d2dyaa_: 2dya A: [131895] automated match to d2cwka1 complexed with adp, cl, mg

       2. Domain d2dyab_: 2dya B: [131896] automated match to d2cwka1 complexed with adp, cl, mg

17. Rice (Oryza sativa) [TaxId:4530] [143285] (1 PDB entry) Uniprot Q07661 1-148

    • Domain for 1pku:

      • Domain d1pkua1: 1pku A:4-151 [118718] Other proteins in same PDB: d1pkub_, d1pkuc_, d1pkud_, d1pkue_, d1pkuf_, d1pkug_, d1pkuh_, d1pkui_, d1pkuj_, d1pkuk_, d1pkul_

18. Slime mold (Dictyostelium discoideum) [TaxId:44689] [54925] (21 PDB entries)

    1. Domains for 1b4s:

       1. Domain d1b4sa_: 1b4s A: [39122] complexed with adp, mg, po4; mutant

       2. Domain d1b4sb_: 1b4s B: [39123] complexed with adp, mg, po4; mutant

       3. Domain d1b4sc_: 1b4s C: [39124] complexed with adp, mg, po4; mutant

    2. Domains for 1b99:

       1. Domain d1b99a_: 1b99 A: [39126] complexed with fup, pop

       2. Domain d1b99b_: 1b99 B: [39127] complexed with fup, pop

       3. Domain d1b99c_: 1b99 C: [39128] complexed with fup, pop

       4. Domain d1b99d_: 1b99 D: [39129] complexed with fup, pop

       5. Domain d1b99e_: 1b99 E: [39130] complexed with fup, pop

       6. Domain d1b99f_: 1b99 F: [39131] complexed with fup, pop

    3. Domains for 1bux:

       1. Domain d1buxa_: 1bux A: [39132] complexed with pps

       2. Domain d1buxb_: 1bux B: [39133] complexed with pps

       3. Domain d1buxc_: 1bux C: [39134] complexed with pps

    4. Domains for 1f3f:

       1. Domain d1f3fa_: 1f3f A: [39101] complexed with d4d, d4t, mg, po4

       2. Domain d1f3fb_: 1f3f B: [39102] complexed with d4d, d4t, mg, po4

       3. Domain d1f3fc_: 1f3f C: [39103] complexed with d4d, d4t, mg, po4

    5. Domains for 1f6t:

       1. Domain d1f6ta_: 1f6t A: [39110] complexed with mg, tbd

       2. Domain d1f6tb_: 1f6t B: [39111] complexed with mg, tbd

       3. Domain d1f6tc_: 1f6t C: [39112] complexed with mg, tbd

    6. Domain for 1hhq:

       • Domain d1hhqa_: 1hhq A: [61044] complexed with so4

    7. Domains for 1hiy:

       1. Domain d1hiya_: 1hiy A: [61068] complexed with 3an

       2. Domain d1hiyb_: 1hiy B: [61069] complexed with 3an

       3. Domain d1hiyc_: 1hiy C: [61070] complexed with 3an

    8. Domain for 1hlw:

       • Domain d1hlwa_: 1hlw A: [39100] mutant

    9. Domains for 1kdn:

       1. Domain d1kdna_: 1kdn A: [39105] complexed with adp, af3, mg

       2. Domain d1kdnb_: 1kdn B: [39106] complexed with adp, af3, mg

       3. Domain d1kdnc_: 1kdn C: [39107] complexed with adp, af3, mg

    10. Domain for 1leo:

        • Domain d1leoa_: 1leo A: [39125]

    11. Domains for 1lwx:

        1. Domain d1lwxa_: 1lwx A: [39119] complexed with azd, mg

        2. Domain d1lwxb_: 1lwx B: [39120] complexed with azd, mg

        3. Domain d1lwxc_: 1lwx C: [39121] complexed with azd, mg

    12. Domains for 1mn7:

        1. Domain d1mn7a_: 1mn7 A: [79316] complexed with abt, mg; mutant

        2. Domain d1mn7b_: 1mn7 B: [79317] complexed with abt, mg; mutant

    13. Domains for 1mn9:

        1. Domain d1mn9a_: 1mn9 A: [85025] complexed with mg, rtp; mutant

        2. Domain d1mn9b_: 1mn9 B: [85026] complexed with mg, rtp; mutant

        3. Domain d1mn9c_: 1mn9 C: [85027] complexed with mg, rtp; mutant

    14. Domain for 1ncl:

        • Domain d1ncla_: 1ncl A: [39109]

    15. Domain for 1ndc:

        • Domain d1ndca_: 1ndc A: [39104] complexed with mg, tyd

    16. Domain for 1ndk:

        • Domain d1ndka_: 1ndk A: [39118]

    17. Domains for 1ndp:

        1. Domain d1ndpa_: 1ndp A: [39113] complexed with adp, mg

        2. Domain d1ndpb_: 1ndp B: [39114] complexed with adp, mg

    18. Domain for 1npk:

        • Domain d1npka_: 1npk A: [39099]

    19. Domain for 1nsp:

        • Domain d1nspa_: 1nsp A: [39108]

    20. Domain for 1pae:

        • Domain d1paex_: 1pae X: [94412] complexed with se

    21. Domains for 2bef:

        1. Domain d2befa_: 2bef A: [39115] complexed with adp, bef, mg

        2. Domain d2befb_: 2bef B: [39116] complexed with adp, bef, mg

        3. Domain d2befc_: 2bef C: [39117] complexed with adp, bef, mg

19. Thale cress (Arabidopsis thaliana) [TaxId:3702] [117949] (1 PDB entry) Uniprot P39207

    • Domains for 1u8w:

      1. Domain d1u8wa_: 1u8w A: [113204]

      2. Domain d1u8wb_: 1u8w B: [113205]

      3. Domain d1u8wc_: 1u8w C: [113206]

      4. Domain d1u8wd_: 1u8w D: [113207]

      5. Domain d1u8we_: 1u8w E: [113208]

      6. Domain d1u8wf_: 1u8w F: [113209]

20. Thale cress (Arabidopsis thaliana), chloroplast NDK2 [TaxId:3702] [117950] (2 PDB entries) Uniprot O64903 79-231

    1. Domains for 1s57:

       1. Domain d1s57a_: 1s57 A: [112028] complexed with epe, so4

       2. Domain d1s57b_: 1s57 B: [112029] complexed with epe, so4

       3. Domain d1s57c_: 1s57 C: [112030] complexed with epe, so4

       4. Domain d1s57d_: 1s57 D: [112031] complexed with epe, so4

       5. Domain d1s57e_: 1s57 E: [112032] complexed with epe, so4

       6. Domain d1s57f_: 1s57 F: [112033] complexed with epe, so4

    2. Domains for 1s59:

       1. Domain d1s59a_: 1s59 A: [112034] complexed with dgi, dgt

       2. Domain d1s59b_: 1s59 B: [112035] complexed with dgi, dgt

       3. Domain d1s59c_: 1s59 C: [112036] complexed with dgi, dgt

       4. Domain d1s59d_: 1s59 D: [112037] complexed with dgi, dgt

       5. Domain d1s59e_: 1s59 E: [112038] complexed with dgi, dgt

       6. Domain d1s59f_: 1s59 F: [112039] complexed with dgi, dgt

21. Thermus thermophilus [TaxId:274] [143289] (3 PDB entries) Uniprot Q5SLV5 1-137

    1. Domains for 1wkj:

       1. Domain d1wkja1: 1wkj A:1-137 [120983]

       2. Domain d1wkjb_: 1wkj B: [120984] automated match to d1wkja1

    2. Domains for 1wkk:

       1. Domain d1wkka_: 1wkk A: [120985] automated match to d1wkja1 complexed with gdp

       2. Domain d1wkkb_: 1wkk B: [120986] automated match to d1wkja1 complexed with gdp

    3. Domains for 1wkl:

       1. Domain d1wkla_: 1wkl A: [120987] automated match to d1wkja1 complexed with adp, atp, mg, phs

       2. Domain d1wklb_: 1wkl B: [120988] automated match to d1wkja1 complexed with adp, atp, mg, phs

More info for Protein Nucleoside diphosphate kinase, NDK from d.58.6.1: Nucleoside diphosphate kinase, NDK

Timeline for Protein Nucleoside diphosphate kinase, NDK from d.58.6.1: Nucleoside diphosphate kinase, NDK:

• Protein Nucleoside diphosphate kinase, NDK from d.58.6.1: Nucleoside diphosphate kinase, NDK first appeared (with stable ids) in SCOP 1.55, called Protein Nucleoside diphosphate kinases from d.58.6.1: Nucleoside diphosphate kinases
  
• Protein Nucleoside diphosphate kinase, NDK from d.58.6.1: Nucleoside diphosphate kinase, NDK appears in SCOPe 2.01
  
• Protein Nucleoside diphosphate kinase, NDK from d.58.6.1: Nucleoside diphosphate kinase, NDK appears in SCOPe 2.03
  
• Protein Nucleoside diphosphate kinase, NDK from d.58.6.1: Nucleoside diphosphate kinase, NDK appears in the current release, SCOPe 2.08