Lineage for Protein: Nucleoside diphosphate kinase, NDK

  1. Root: SCOP 1.75
  2. 849709Class d: Alpha and beta proteins (a+b) [53931] (376 folds)
  3. 861003Fold d.58: Ferredoxin-like [54861] (59 superfamilies)
    alpha+beta sandwich with antiparallel beta-sheet; (beta-alpha-beta)x2
  4. 861820Superfamily d.58.6: Nucleoside diphosphate kinase, NDK [54919] (1 family) (S)
  5. 861821Family d.58.6.1: Nucleoside diphosphate kinase, NDK [54920] (1 protein)
  6. 861822Protein Nucleoside diphosphate kinase, NDK [54921] (20 species)

Species:

  1. 861823Archaeon Halobacterium salinarum [TaxId:2242] [143288] (2 PDB entries)
    Uniprot P61136 4-158
    1. Domains for 2az1:
      1. 861833Domain d2az1a1: 2az1 A:4-158 [127580]
        complexed with ca
      2. 861834Domain d2az1b1: 2az1 B:4-158 [127581]
        automatically matched to 2AZ1 A:4-158
        complexed with ca
      3. 861835Domain d2az1c1: 2az1 C:4-158 [127582]
        automatically matched to 2AZ1 A:4-158
        complexed with ca
      4. 861836Domain d2az1d1: 2az1 D:4-158 [127583]
        automatically matched to 2AZ1 A:4-158
        complexed with ca
      5. 861837Domain d2az1e1: 2az1 E:5-158 [127584]
        automatically matched to 2AZ1 A:4-158
        complexed with ca
      6. 861838Domain d2az1f1: 2az1 F:4-158 [127585]
        automatically matched to 2AZ1 A:4-158
        complexed with ca
    2. Domains for 2az3:
      1. 861824Domain d2az3a1: 2az3 A:4-155 [127588]
        automatically matched to 2AZ1 A:4-158
        complexed with cdp, mg
      2. 861825Domain d2az3b1: 2az3 B:5-155 [127589]
        automatically matched to 2AZ1 A:4-158
        complexed with cdp, mg
      3. 861826Domain d2az3c1: 2az3 C:4-156 [127590]
        automatically matched to 2AZ1 A:4-158
        complexed with cdp, mg
      4. 861827Domain d2az3d1: 2az3 D:4-155 [127591]
        automatically matched to 2AZ1 A:4-158
        complexed with cdp, mg
      5. 861828Domain d2az3e1: 2az3 E:4-155 [127592]
        automatically matched to 2AZ1 A:4-158
        complexed with cdp, mg
      6. 861829Domain d2az3f1: 2az3 F:4-155 [127593]
        automatically matched to 2AZ1 A:4-158
        complexed with cdp, mg
      7. 861830Domain d2az3g1: 2az3 G:4-155 [127594]
        automatically matched to 2AZ1 A:4-158
        complexed with cdp, mg
      8. 861831Domain d2az3h1: 2az3 H:4-155 [127595]
        automatically matched to 2AZ1 A:4-158
        complexed with cdp, mg
      9. 861832Domain d2az3i1: 2az3 I:5-155 [127596]
        automatically matched to 2AZ1 A:4-158
        complexed with cdp, mg
  2. 861839Archaeon Pyrobaculum aerophilum [TaxId:13773] [143287] (1 PDB entry)
    Uniprot Q8ZWY4 2-183
  3. 861843Archaeon Pyrococcus horikoshii [TaxId:53953] [143284] (6 PDB entries)
    Uniprot O58429 3-155
    1. Domains for 2cwk:
      1. 861852Domain d2cwka1: 2cwk A:6-158 [130925]
      2. 861853Domain d2cwkb1: 2cwk B:6-157 [130926]
        automatically matched to 2CWK A:6-158
    2. Domains for 2dxd:
      1. 861848Domain d2dxda1: 2dxd A:6-158 [131868]
        automatically matched to 2CWK A:6-158
        complexed with anp, cl
      2. 861849Domain d2dxdb1: 2dxd B:6-158 [131869]
        automatically matched to 2CWK A:6-158
        complexed with anp, cl
    3. Domains for 2dxe:
      1. 861846Domain d2dxea1: 2dxe A:6-158 [131870]
        automatically matched to 2CWK A:6-158
        complexed with cl, gdp, mg
      2. 861847Domain d2dxeb1: 2dxe B:6-158 [131871]
        automatically matched to 2CWK A:6-158
        complexed with cl, gdp, mg
    4. Domains for 2dxf:
      1. 861850Domain d2dxfa1: 2dxf A:6-158 [131872]
        automatically matched to 2CWK A:6-158
        complexed with cl, gnp
      2. 861851Domain d2dxfb1: 2dxf B:6-158 [131873]
        automatically matched to 2CWK A:6-158
        complexed with cl, gnp
    5. Domains for 2dy9:
      1. 861854Domain d2dy9a1: 2dy9 A:6-158 [131893]
        automatically matched to 2CWK A:6-158
        complexed with adp, cl, mg
      2. 861855Domain d2dy9b1: 2dy9 B:6-158 [131894]
        automatically matched to 2CWK A:6-158
        complexed with adp, cl, mg
    6. Domains for 2dya:
      1. 861844Domain d2dyaa1: 2dya A:6-158 [131895]
        automatically matched to 2CWK A:6-158
        complexed with adp, cl, mg
      2. 861845Domain d2dyab1: 2dya B:6-158 [131896]
        automatically matched to 2CWK A:6-158
        complexed with adp, cl, mg
  4. 861856Bacillus halodenitrificans [TaxId:1482] [89937] (1 PDB entry)
  5. 861858Cow (Bos taurus) [TaxId:9913] [54924] (2 PDB entries)
    1. Domains for 1be4:
      1. 861859Domain d1be4a_: 1be4 A: [39090]
      2. 861860Domain d1be4b_: 1be4 B: [39091]
      3. 861861Domain d1be4c_: 1be4 C: [39092]
        complexed with pcg
    2. Domains for 1bhn:
      1. 861862Domain d1bhna_: 1bhn A: [39093]
      2. 861863Domain d1bhnb_: 1bhn B: [39094]
      3. 861864Domain d1bhnc_: 1bhn C: [39095]
      4. 861865Domain d1bhnd_: 1bhn D: [39096]
      5. 861866Domain d1bhne_: 1bhn E: [39097]
      6. 861867Domain d1bhnf_: 1bhn F: [39098]
        complexed with 35g, gdp
  6. 861868Dictyostelium discoideum [TaxId:44689] [54925] (22 PDB entries)
    1. Domains for 1b4s:
      1. 861900Domain d1b4sa_: 1b4s A: [39122]
      2. 861901Domain d1b4sb_: 1b4s B: [39123]
      3. 861902Domain d1b4sc_: 1b4s C: [39124]
        complexed with adp, mg, po4; mutant
    2. Domains for 1b99:
      1. 861904Domain d1b99a_: 1b99 A: [39126]
      2. 861905Domain d1b99b_: 1b99 B: [39127]
      3. 861906Domain d1b99c_: 1b99 C: [39128]
      4. 861907Domain d1b99d_: 1b99 D: [39129]
      5. 861908Domain d1b99e_: 1b99 E: [39130]
      6. 861909Domain d1b99f_: 1b99 F: [39131]
        complexed with fup, pop
    3. Domains for 1bux:
      1. 861918Domain d1buxa_: 1bux A: [39132]
      2. 861919Domain d1buxb_: 1bux B: [39133]
      3. 861920Domain d1buxc_: 1bux C: [39134]
        complexed with pps
    4. Domains for 1f3f:
      1. 861871Domain d1f3fa_: 1f3f A: [39101]
      2. 861872Domain d1f3fb_: 1f3f B: [39102]
      3. 861873Domain d1f3fc_: 1f3f C: [39103]
        complexed with d4d, d4t, mg, po4; mutant
    5. Domains for 1f6t:
      1. 861886Domain d1f6ta_: 1f6t A: [39110]
      2. 861887Domain d1f6tb_: 1f6t B: [39111]
      3. 861888Domain d1f6tc_: 1f6t C: [39112]
        complexed with mg, tbd
    6. Domain for 1hhq:
    7. Domains for 1hiy:
      1. 861914Domain d1hiya_: 1hiy A: [61068]
      2. 861915Domain d1hiyb_: 1hiy B: [61069]
      3. 861916Domain d1hiyc_: 1hiy C: [61070]
        complexed with 3an
    8. Domain for 1hlw:
    9. Domains for 1kdn:
      1. 861875Domain d1kdna_: 1kdn A: [39105]
      2. 861876Domain d1kdnb_: 1kdn B: [39106]
      3. 861877Domain d1kdnc_: 1kdn C: [39107]
        complexed with adp, af3, mg
    10. Domain for 1leo:
    11. Domains for 1lwx:
      1. 861897Domain d1lwxa_: 1lwx A: [39119]
      2. 861898Domain d1lwxb_: 1lwx B: [39120]
      3. 861899Domain d1lwxc_: 1lwx C: [39121]
        complexed with azd, mg; mutant
    12. Domains for 1mn7:
      1. 861895Domain d1mn7a_: 1mn7 A: [79316]
      2. 861896Domain d1mn7b_: 1mn7 B: [79317]
        complexed with abt, mg; mutant
    13. Domains for 1mn9:
      1. 861911Domain d1mn9a_: 1mn9 A: [85025]
      2. 861912Domain d1mn9b_: 1mn9 B: [85026]
      3. 861913Domain d1mn9c_: 1mn9 C: [85027]
        complexed with mg, rtp; mutant
    14. Domain for 1ncl:
    15. Domain for 1ndc:
    16. Domain for 1ndk:
    17. Domains for 1ndp:
      1. 861890Domain d1ndpa_: 1ndp A: [39113]
      2. 861891Domain d1ndpb_: 1ndp B: [39114]
        complexed with adp, mg
    18. Domain for 1npk:
    19. Domain for 1nsp:
    20. Domain for 1pae:
    21. Domains for 1s5z:
      1. 861878Domain d1s5za1: 1s5z A:6-155 [118868]
        automatically matched to d1f6tb_
        complexed with po4, son
      2. 861879Domain d1s5zb1: 1s5z B:6-155 [118869]
        automatically matched to d1f6tb_
        complexed with po4, son
      3. 861880Domain d1s5zc1: 1s5z C:6-155 [118870]
        automatically matched to d1f6tb_
        complexed with po4, son
      4. 861881Domain d1s5zd1: 1s5z D:6-155 [118871]
        automatically matched to d1f6tb_
        complexed with po4, son
      5. 861882Domain d1s5ze1: 1s5z E:6-155 [118872]
        automatically matched to d1f6tb_
        complexed with po4, son
      6. 861883Domain d1s5zf1: 1s5z F:6-155 [118873]
        automatically matched to d1f6tb_
        complexed with po4, son
    22. Domains for 2bef:
      1. 861892Domain d2befa_: 2bef A: [39115]
      2. 861893Domain d2befb_: 2bef B: [39116]
      3. 861894Domain d2befc_: 2bef C: [39117]
        complexed with adp, bef, mg
  7. 861921Drosophila melanogaster [TaxId:7227] [54926] (2 PDB entries)
    1. Domains for 1ndl:
      1. 861925Domain d1ndla_: 1ndl A: [39138]
      2. 861926Domain d1ndlb_: 1ndl B: [39139]
      3. 861927Domain d1ndlc_: 1ndl C: [39140]
    2. Domains for 1nsq:
      1. 861922Domain d1nsqa_: 1nsq A: [39135]
      2. 861923Domain d1nsqb_: 1nsq B: [39136]
      3. 861924Domain d1nsqc_: 1nsq C: [39137]
        complexed with phs
  8. 861928Human (Homo sapiens) [TaxId:9606] [54922] (4 PDB entries)
    1. Domains for 1nsk:
      1. 861947Domain d1nskl_: 1nsk L: [39083]
        CASP1
      2. 861948Domain d1nskn_: 1nsk N: [39086]
        CASP1
      3. 861949Domain d1nsko_: 1nsk O: [39087]
        CASP1
      4. 861950Domain d1nskr_: 1nsk R: [39082]
        CASP1
      5. 861951Domain d1nskt_: 1nsk T: [39084]
        CASP1
      6. 861952Domain d1nsku_: 1nsk U: [39085]
        CASP1
    2. Domains for 1nue:
      1. 861941Domain d1nuea_: 1nue A: [39076]
      2. 861942Domain d1nueb_: 1nue B: [39077]
      3. 861943Domain d1nuec_: 1nue C: [39078]
      4. 861944Domain d1nued_: 1nue D: [39079]
      5. 861945Domain d1nuee_: 1nue E: [39080]
      6. 861946Domain d1nuef_: 1nue F: [39081]
        complexed with gdp, mg
    3. Domains for 3bbb:
      1. 861929Domain d3bbba1: 3bbb A:2-151 [155055]
        automatically matched to d1nskl_
        complexed with da, dg
      2. 861930Domain d3bbbb1: 3bbb B:2-151 [155056]
        automatically matched to d1nskl_
        complexed with da, dg
      3. 861931Domain d3bbbc1: 3bbb C:5-151 [155057]
        automatically matched to d1nskl_
        complexed with da, dg
      4. 861932Domain d3bbbd1: 3bbb D:2-151 [155058]
        automatically matched to d1nskl_
        complexed with da, dg
      5. 861933Domain d3bbbe1: 3bbb E:5-151 [155059]
        automatically matched to d1nskl_
        complexed with da, dg
      6. 861934Domain d3bbbf1: 3bbb F:2-151 [155060]
        automatically matched to d1nskl_
        complexed with da, dg
    4. Domains for 3bbf:
      1. 861935Domain d3bbfa1: 3bbf A:2-151 [155065]
        automatically matched to d1nskl_
        complexed with dtt, gdp, mg
      2. 861936Domain d3bbfb1: 3bbf B:2-151 [155066]
        automatically matched to d1nskl_
        complexed with dtt, gdp, mg
      3. 861937Domain d3bbfc1: 3bbf C:2-151 [155067]
        automatically matched to d1nskl_
        complexed with dtt, gdp, mg
      4. 861938Domain d3bbfd1: 3bbf D:2-151 [155068]
        automatically matched to d1nskl_
        complexed with dtt, gdp, mg
      5. 861939Domain d3bbfe1: 3bbf E:2-151 [155069]
        automatically matched to d1nskl_
        complexed with dtt, gdp, mg
      6. 861940Domain d3bbff1: 3bbf F:2-151 [155070]
        automatically matched to d1nskl_
        complexed with dtt, gdp, mg
  9. 861953Human (Homo sapiens), NDK4 [TaxId:9606] [54923] (1 PDB entry)
  10. 861956Human (Homo sapiens), NDKA [TaxId:9606] [75437] (3 PDB entries)
    1. Domains for 1jxv:
      1. 861960Domain d1jxva_: 1jxv A: [71932]
      2. 861961Domain d1jxvb_: 1jxv B: [71933]
      3. 861962Domain d1jxvc_: 1jxv C: [71934]
      4. 861963Domain d1jxvd_: 1jxv D: [71935]
      5. 861964Domain d1jxve_: 1jxv E: [71936]
      6. 861965Domain d1jxvf_: 1jxv F: [71937]
    2. Domains for 1ucn:
      1. 861957Domain d1ucna_: 1ucn A: [99183]
      2. 861958Domain d1ucnb_: 1ucn B: [99184]
      3. 861959Domain d1ucnc_: 1ucn C: [99185]
        complexed with adp, ca, po4, trs; mutant
    3. Domains for 2hvd:
      1. 861966Domain d2hvda1: 2hvd A:4-152 [136801]
        automatically matched to d1jxva_
        complexed with adp
      2. 861967Domain d2hvdb1: 2hvd B:4-152 [136802]
        automatically matched to d1jxva_
        complexed with adp
      3. 861968Domain d2hvdc1: 2hvd C:4-152 [136803]
        automatically matched to d1jxva_
        complexed with adp
  11. 861969Human(Homo sapiens), NDK3 [TaxId:9606] [143283] (1 PDB entry)
    Uniprot Q13232 18-169
  12. 861973Mimivirus [TaxId:315393] [143286] (2 PDB entries)
    Uniprot Q5UQL3 2-137
    1. Domains for 2b8p:
      1. 861980Domain d2b8pa1: 2b8p A:2-129 [128101]
        complexed with so4
      2. 861981Domain d2b8pb1: 2b8p B:2-129 [128102]
        automatically matched to 2B8P A:2-129
        complexed with so4
    2. Domains for 2b8q:
      1. 861974Domain d2b8qa1: 2b8q A:2-129 [128103]
        automatically matched to 2B8P A:2-129
        complexed with mg, po4, tyd
      2. 861975Domain d2b8qb1: 2b8q B:2-129 [128104]
        automatically matched to 2B8P A:2-129
        complexed with mg, po4, tyd
      3. 861976Domain d2b8qc1: 2b8q C:2-129 [128105]
        automatically matched to 2B8P A:2-129
        complexed with mg, po4, tyd
      4. 861977Domain d2b8qd1: 2b8q D:2-129 [128106]
        automatically matched to 2B8P A:2-129
        complexed with mg, po4, tyd
      5. 861978Domain d2b8qe1: 2b8q E:2-129 [128107]
        automatically matched to 2B8P A:2-129
        complexed with mg, po4, tyd
      6. 861979Domain d2b8qf1: 2b8q F:2-129 [128108]
        automatically matched to 2B8P A:2-129
        complexed with mg, po4, tyd
  13. 861982Mycobacterium tuberculosis [TaxId:1773] [75438] (1 PDB entry)
  14. 861989Myxococcus xanthus [TaxId:34] [54927] (3 PDB entries)
    1. Domains for 1nhk:
      1. 861990Domain d1nhkl_: 1nhk L: [39142]
        complexed with cmp
      2. 861991Domain d1nhkr_: 1nhk R: [39141]
    2. Domains for 1nlk:
      1. 861994Domain d1nlkl_: 1nlk L: [39146]
        complexed with adp, mg
      2. 861995Domain d1nlkr_: 1nlk R: [39145]
    3. Domains for 2nck:
      1. 861992Domain d2nckl_: 2nck L: [39144]
      2. 861993Domain d2nckr_: 2nck R: [39143]
  15. 861996Pea (Pisum sativum) [TaxId:3888] [117948] (1 PDB entry)
    Uniprot Q9SP13 81-231
  16. 862003Plasmodium falciparum, isolate 3D7 [TaxId:5833] [117947] (1 PDB entry)
    Uniprot Q8ID43
  17. 862010Rice(Oryza sativa) [TaxId:4530] [143285] (1 PDB entry)
    Uniprot Q07661 1-148
  18. 862023Thale cress (Arabidopsis thaliana) [TaxId:3702] [117949] (1 PDB entry)
    Uniprot P39207
  19. 862030Thale cress (Arabidopsis thaliana), chloroplast NDK2 [TaxId:3702] [117950] (2 PDB entries)
    Uniprot O64903 79-231
    1. Domains for 1s57:
      1. 862031Domain d1s57a_: 1s57 A: [112028]
      2. 862032Domain d1s57b_: 1s57 B: [112029]
      3. 862033Domain d1s57c_: 1s57 C: [112030]
      4. 862034Domain d1s57d_: 1s57 D: [112031]
      5. 862035Domain d1s57e_: 1s57 E: [112032]
      6. 862036Domain d1s57f_: 1s57 F: [112033]
        complexed with epe, so4
    2. Domains for 1s59:
      1. 862037Domain d1s59a_: 1s59 A: [112034]
      2. 862038Domain d1s59b_: 1s59 B: [112035]
      3. 862039Domain d1s59c_: 1s59 C: [112036]
      4. 862040Domain d1s59d_: 1s59 D: [112037]
      5. 862041Domain d1s59e_: 1s59 E: [112038]
      6. 862042Domain d1s59f_: 1s59 F: [112039]
        complexed with dgi, dgt
  20. 862043Thermus thermophilus [TaxId:274] [143289] (3 PDB entries)
    Uniprot Q5SLV5 1-137
    1. Domains for 1wkj:
      1. 862044Domain d1wkja1: 1wkj A:1-137 [120983]
      2. 862045Domain d1wkjb1: 1wkj B:1-137 [120984]
        automatically matched to 1WKJ A:1-137
    2. Domains for 1wkk:
      1. 862048Domain d1wkka1: 1wkk A:1-137 [120985]
        automatically matched to 1WKJ A:1-137
        complexed with gdp
      2. 862049Domain d1wkkb1: 1wkk B:1-137 [120986]
        automatically matched to 1WKJ A:1-137
        complexed with gdp
    3. Domains for 1wkl:
      1. 862046Domain d1wkla1: 1wkl A:1-137 [120987]
        automatically matched to 1WKJ A:1-137
        complexed with adp, atp, mg, phs
      2. 862047Domain d1wklb1: 1wkl B:1-137 [120988]
        automatically matched to 1WKJ A:1-137
        complexed with adp, atp, mg, phs

More info for Protein Nucleoside diphosphate kinase, NDK from d.58.6.1: Nucleoside diphosphate kinase, NDK

Timeline for Protein Nucleoside diphosphate kinase, NDK from d.58.6.1: Nucleoside diphosphate kinase, NDK: