SCOP 1.73: Protein: Nucleoside diphosphate kinase, NDK

Lineage for Protein: Nucleoside diphosphate kinase, NDK

Root: SCOP 1.73
Class d: Alpha and beta proteins (a+b) [53931] (334 folds)
Fold d.58: Ferredoxin-like [54861] (55 superfamilies)
alpha+beta sandwich with antiparallel beta-sheet; (beta-alpha-beta)x2
Superfamily d.58.6: Nucleoside diphosphate kinase, NDK [54919] (1 family)
Family d.58.6.1: Nucleoside diphosphate kinase, NDK [54920] (1 protein)
Protein Nucleoside diphosphate kinase, NDK [54921] (20 species)

Species:

Archaeon Halobacterium salinarum [TaxId:2242] [143288] (2 PDB entries)
1. Domains for 2az1:
  1. Domain d2az1a1: 2az1 A:4-158 [127580]
    complexed with ca
  2. Domain d2az1b1: 2az1 B:4-158 [127581]
    automatically matched to 2AZ1 A:4-158
    complexed with ca
  3. Domain d2az1c1: 2az1 C:4-158 [127582]
    automatically matched to 2AZ1 A:4-158
    complexed with ca
  4. Domain d2az1d1: 2az1 D:4-158 [127583]
    automatically matched to 2AZ1 A:4-158
    complexed with ca
  5. Domain d2az1e1: 2az1 E:5-158 [127584]
    automatically matched to 2AZ1 A:4-158
    complexed with ca
  6. Domain d2az1f1: 2az1 F:4-158 [127585]
    automatically matched to 2AZ1 A:4-158
    complexed with ca
2. Domains for 2az3:
  1. Domain d2az3a1: 2az3 A:4-155 [127588]
    automatically matched to 2AZ1 A:4-158
    complexed with cdp, mg
  2. Domain d2az3b1: 2az3 B:5-155 [127589]
    automatically matched to 2AZ1 A:4-158
    complexed with cdp, mg
  3. Domain d2az3c1: 2az3 C:4-156 [127590]
    automatically matched to 2AZ1 A:4-158
    complexed with cdp, mg
  4. Domain d2az3d1: 2az3 D:4-155 [127591]
    automatically matched to 2AZ1 A:4-158
    complexed with cdp, mg
  5. Domain d2az3e1: 2az3 E:4-155 [127592]
    automatically matched to 2AZ1 A:4-158
    complexed with cdp, mg
  6. Domain d2az3f1: 2az3 F:4-155 [127593]
    automatically matched to 2AZ1 A:4-158
    complexed with cdp, mg
  7. Domain d2az3g1: 2az3 G:4-155 [127594]
    automatically matched to 2AZ1 A:4-158
    complexed with cdp, mg
  8. Domain d2az3h1: 2az3 H:4-155 [127595]
    automatically matched to 2AZ1 A:4-158
    complexed with cdp, mg
  9. Domain d2az3i1: 2az3 I:5-155 [127596]
    automatically matched to 2AZ1 A:4-158
    complexed with cdp, mg
Archaeon Pyrobaculum aerophilum [TaxId:13773] [143287] (1 PDB entry)
- Domains for 1xqi:
  1. Domain d1xqia1: 1xqi A:14-195 [122237]
    complexed with pge, trs; mutant
  2. Domain d1xqib1: 1xqi B:14-195 [122238]
    automatically matched to 1XQI A:14-195
    complexed with pge, trs; mutant
  3. Domain d1xqic1: 1xqi C:14-195 [122239]
    automatically matched to 1XQI A:14-195
    complexed with pge, trs; mutant
Archaeon Pyrococcus horikoshii [TaxId:53953] [143284] (6 PDB entries)
1. Domains for 2cwk:
  1. Domain d2cwka1: 2cwk A:6-158 [130925]
  2. Domain d2cwkb1: 2cwk B:6-157 [130926]
    automatically matched to 2CWK A:6-158
2. Domains for 2dxd:
  1. Domain d2dxda1: 2dxd A:6-158 [131868]
    automatically matched to 2CWK A:6-158
    complexed with anp, cl
  2. Domain d2dxdb1: 2dxd B:6-158 [131869]
    automatically matched to 2CWK A:6-158
    complexed with anp, cl
3. Domains for 2dxe:
  1. Domain d2dxea1: 2dxe A:6-158 [131870]
    automatically matched to 2CWK A:6-158
    complexed with cl, gdp, mg
  2. Domain d2dxeb1: 2dxe B:6-158 [131871]
    automatically matched to 2CWK A:6-158
    complexed with cl, gdp, mg
4. Domains for 2dxf:
  1. Domain d2dxfa1: 2dxf A:6-158 [131872]
    automatically matched to 2CWK A:6-158
    complexed with cl, gnp
  2. Domain d2dxfb1: 2dxf B:6-158 [131873]
    automatically matched to 2CWK A:6-158
    complexed with cl, gnp
5. Domains for 2dy9:
  1. Domain d2dy9a1: 2dy9 A:6-158 [131893]
    automatically matched to 2CWK A:6-158
    complexed with adp, cl, mg
  2. Domain d2dy9b1: 2dy9 B:6-158 [131894]
    automatically matched to 2CWK A:6-158
    complexed with adp, cl, mg
6. Domains for 2dya:
  1. Domain d2dyaa1: 2dya A:6-158 [131895]
    automatically matched to 2CWK A:6-158
    complexed with adp, cl, mg
  2. Domain d2dyab1: 2dya B:6-158 [131896]
    automatically matched to 2CWK A:6-158
    complexed with adp, cl, mg
Bacillus halodenitrificans [TaxId:1482] [89937] (1 PDB entry)
- Domain for 1nb2:
  - Domain d1nb2a_: 1nb2 A: [85508]
Cow (Bos taurus) [TaxId:9913] [54924] (2 PDB entries)
1. Domains for 1be4:
  1. Domain d1be4a_: 1be4 A: [39090]
  2. Domain d1be4b_: 1be4 B: [39091]
  3. Domain d1be4c_: 1be4 C: [39092]
    complexed with pcg
2. Domains for 1bhn:
  1. Domain d1bhna_: 1bhn A: [39093]
  2. Domain d1bhnb_: 1bhn B: [39094]
  3. Domain d1bhnc_: 1bhn C: [39095]
  4. Domain d1bhnd_: 1bhn D: [39096]
  5. Domain d1bhne_: 1bhn E: [39097]
  6. Domain d1bhnf_: 1bhn F: [39098]
    complexed with 35g, gdp
Dictyostelium discoideum [TaxId:44689] [54925] (22 PDB entries)
1. Domains for 1b4s:
  1. Domain d1b4sa_: 1b4s A: [39122]
  2. Domain d1b4sb_: 1b4s B: [39123]
  3. Domain d1b4sc_: 1b4s C: [39124]
    complexed with adp, mg, po4; mutant
2. Domains for 1b99:
  1. Domain d1b99a_: 1b99 A: [39126]
  2. Domain d1b99b_: 1b99 B: [39127]
  3. Domain d1b99c_: 1b99 C: [39128]
  4. Domain d1b99d_: 1b99 D: [39129]
  5. Domain d1b99e_: 1b99 E: [39130]
  6. Domain d1b99f_: 1b99 F: [39131]
    complexed with fup, pop
3. Domains for 1bux:
  1. Domain d1buxa_: 1bux A: [39132]
  2. Domain d1buxb_: 1bux B: [39133]
  3. Domain d1buxc_: 1bux C: [39134]
    complexed with pps
4. Domains for 1f3f:
  1. Domain d1f3fa_: 1f3f A: [39101]
  2. Domain d1f3fb_: 1f3f B: [39102]
  3. Domain d1f3fc_: 1f3f C: [39103]
    complexed with d4d, d4t, mg, po4; mutant
5. Domains for 1f6t:
  1. Domain d1f6ta_: 1f6t A: [39110]
  2. Domain d1f6tb_: 1f6t B: [39111]
  3. Domain d1f6tc_: 1f6t C: [39112]
    complexed with mg, tbd
6. Domain for 1hhq:
  - Domain d1hhqa_: 1hhq A: [61044]
    complexed with so4; mutant
7. Domains for 1hiy:
  1. Domain d1hiya_: 1hiy A: [61068]
  2. Domain d1hiyb_: 1hiy B: [61069]
  3. Domain d1hiyc_: 1hiy C: [61070]
    complexed with 3an
8. Domain for 1hlw:
  - Domain d1hlwa_: 1hlw A: [39100]
    mutant
9. Domains for 1kdn:
  1. Domain d1kdna_: 1kdn A: [39105]
  2. Domain d1kdnb_: 1kdn B: [39106]
  3. Domain d1kdnc_: 1kdn C: [39107]
    complexed with adp, af3, mg
10. Domain for 1leo:
  - Domain d1leoa_: 1leo A: [39125]
    mutant
11. Domains for 1lwx:
  1. Domain d1lwxa_: 1lwx A: [39119]
  2. Domain d1lwxb_: 1lwx B: [39120]
  3. Domain d1lwxc_: 1lwx C: [39121]
    complexed with azd, mg; mutant
12. Domains for 1mn7:
  1. Domain d1mn7a_: 1mn7 A: [79316]
  2. Domain d1mn7b_: 1mn7 B: [79317]
    complexed with abt, mg; mutant
13. Domains for 1mn9:
  1. Domain d1mn9a_: 1mn9 A: [85025]
  2. Domain d1mn9b_: 1mn9 B: [85026]
  3. Domain d1mn9c_: 1mn9 C: [85027]
    complexed with mg, rtp; mutant
14. Domain for 1ncl:
  - Domain d1ncla_: 1ncl A: [39109]
    mutant
15. Domain for 1ndc:
  - Domain d1ndca_: 1ndc A: [39104]
    complexed with mg, tyd
16. Domain for 1ndk:
  - Domain d1ndka_: 1ndk A: [39118]
    mutant
17. Domains for 1ndp:
  1. Domain d1ndpa_: 1ndp A: [39113]
  2. Domain d1ndpb_: 1ndp B: [39114]
    complexed with adp, mg
18. Domain for 1npk:
  - Domain d1npka_: 1npk A: [39099]
19. Domain for 1nsp:
  - Domain d1nspa_: 1nsp A: [39108]
    complexed with phs
20. Domain for 1pae:
  - Domain d1paex_: 1pae X: [94412]
    complexed with cse, se; mutant
21. Domains for 1s5z:
  1. Domain d1s5za1: 1s5z A:6-155 [118868]
    automatically matched to d1f6tb_
    complexed with po4, son
  2. Domain d1s5zb1: 1s5z B:6-155 [118869]
    automatically matched to d1f6tb_
    complexed with po4, son
  3. Domain d1s5zc1: 1s5z C:6-155 [118870]
    automatically matched to d1f6tb_
    complexed with po4, son
  4. Domain d1s5zd1: 1s5z D:6-155 [118871]
    automatically matched to d1f6tb_
    complexed with po4, son
  5. Domain d1s5ze1: 1s5z E:6-155 [118872]
    automatically matched to d1f6tb_
    complexed with po4, son
  6. Domain d1s5zf1: 1s5z F:6-155 [118873]
    automatically matched to d1f6tb_
    complexed with po4, son
22. Domains for 2bef:
  1. Domain d2befa_: 2bef A: [39115]
  2. Domain d2befb_: 2bef B: [39116]
  3. Domain d2befc_: 2bef C: [39117]
    complexed with adp, bef, mg
Drosophila melanogaster [TaxId:7227] [54926] (2 PDB entries)
1. Domains for 1ndl:
  1. Domain d1ndla_: 1ndl A: [39138]
  2. Domain d1ndlb_: 1ndl B: [39139]
  3. Domain d1ndlc_: 1ndl C: [39140]
2. Domains for 1nsq:
  1. Domain d1nsqa_: 1nsq A: [39135]
  2. Domain d1nsqb_: 1nsq B: [39136]
  3. Domain d1nsqc_: 1nsq C: [39137]
    complexed with phs
Human (Homo sapiens) [TaxId:9606] [54922] (2 PDB entries)
1. Domains for 1nsk:
  1. Domain d1nskl_: 1nsk L: [39083]
  2. Domain d1nskn_: 1nsk N: [39086]
  3. Domain d1nsko_: 1nsk O: [39087]
    CASP1
  4. Domain d1nskr_: 1nsk R: [39082]
  5. Domain d1nskt_: 1nsk T: [39084]
  6. Domain d1nsku_: 1nsk U: [39085]
2. Domains for 1nue:
  1. Domain d1nuea_: 1nue A: [39076]
  2. Domain d1nueb_: 1nue B: [39077]
  3. Domain d1nuec_: 1nue C: [39078]
  4. Domain d1nued_: 1nue D: [39079]
  5. Domain d1nuee_: 1nue E: [39080]
  6. Domain d1nuef_: 1nue F: [39081]
    complexed with gdp, mg
Human (Homo sapiens), NDK4 [TaxId:9606] [54923] (1 PDB entry)
- Domains for 1ehw:
  1. Domain d1ehwa_: 1ehw A: [39088]
  2. Domain d1ehwb_: 1ehw B: [39089]
    complexed with so4; mutant
Human (Homo sapiens), NDKA [TaxId:9606] [75437] (3 PDB entries)
1. Domains for 1jxv:
  1. Domain d1jxva_: 1jxv A: [71932]
  2. Domain d1jxvb_: 1jxv B: [71933]
  3. Domain d1jxvc_: 1jxv C: [71934]
  4. Domain d1jxvd_: 1jxv D: [71935]
  5. Domain d1jxve_: 1jxv E: [71936]
  6. Domain d1jxvf_: 1jxv F: [71937]
2. Domains for 1ucn:
  1. Domain d1ucna_: 1ucn A: [99183]
  2. Domain d1ucnb_: 1ucn B: [99184]
  3. Domain d1ucnc_: 1ucn C: [99185]
    complexed with adp, ca, po4, trs; mutant
3. Domains for 2hvd:
  1. Domain d2hvda1: 2hvd A:4-152 [136801]
    automatically matched to d1jxva_
    complexed with adp
  2. Domain d2hvdb1: 2hvd B:4-152 [136802]
    automatically matched to d1jxva_
    complexed with adp
  3. Domain d2hvdc1: 2hvd C:4-152 [136803]
    automatically matched to d1jxva_
    complexed with adp
Human(Homo sapiens), NDK3 [TaxId:9606] [143283] (1 PDB entry)
- Domains for 1zs6:
  1. Domain d1zs6a1: 1zs6 A:18-169 [125590]
    complexed with adp
  2. Domain d1zs6b1: 1zs6 B:18-169 [125591]
    automatically matched to 1ZS6 A:18-169
    complexed with adp
  3. Domain d1zs6d1: 1zs6 D:18-169 [125592]
    automatically matched to 1ZS6 A:18-169
    complexed with adp
Mimivirus [TaxId:315393] [143286] (2 PDB entries)
1. Domains for 2b8p:
  1. Domain d2b8pa1: 2b8p A:2-129 [128101]
    complexed with so4
  2. Domain d2b8pb1: 2b8p B:2-129 [128102]
    automatically matched to 2B8P A:2-129
    complexed with so4
2. Domains for 2b8q:
  1. Domain d2b8qa1: 2b8q A:2-129 [128103]
    automatically matched to 2B8P A:2-129
    complexed with mg, po4, tyd
  2. Domain d2b8qb1: 2b8q B:2-129 [128104]
    automatically matched to 2B8P A:2-129
    complexed with mg, po4, tyd
  3. Domain d2b8qc1: 2b8q C:2-129 [128105]
    automatically matched to 2B8P A:2-129
    complexed with mg, po4, tyd
  4. Domain d2b8qd1: 2b8q D:2-129 [128106]
    automatically matched to 2B8P A:2-129
    complexed with mg, po4, tyd
  5. Domain d2b8qe1: 2b8q E:2-129 [128107]
    automatically matched to 2B8P A:2-129
    complexed with mg, po4, tyd
  6. Domain d2b8qf1: 2b8q F:2-129 [128108]
    automatically matched to 2B8P A:2-129
    complexed with mg, po4, tyd
Mycobacterium tuberculosis [TaxId:1773] [75438] (1 PDB entry)
- Domains for 1k44:
  1. Domain d1k44a_: 1k44 A: [72033]
  2. Domain d1k44b_: 1k44 B: [72034]
  3. Domain d1k44c_: 1k44 C: [72035]
  4. Domain d1k44d_: 1k44 D: [72036]
  5. Domain d1k44e_: 1k44 E: [72037]
  6. Domain d1k44f_: 1k44 F: [72038]
Myxococcus xanthus [TaxId:34] [54927] (3 PDB entries)
1. Domains for 1nhk:
  1. Domain d1nhkl_: 1nhk L: [39142]
    complexed with cmp
  2. Domain d1nhkr_: 1nhk R: [39141]
2. Domains for 1nlk:
  1. Domain d1nlkl_: 1nlk L: [39146]
    complexed with adp, mg
  2. Domain d1nlkr_: 1nlk R: [39145]
3. Domains for 2nck:
  1. Domain d2nckl_: 2nck L: [39144]
  2. Domain d2nckr_: 2nck R: [39143]
Pea (Pisum sativum) [TaxId:3888] [117948] (1 PDB entry)
- Domains for 1w7w:
  1. Domain d1w7wa_: 1w7w A: [114327]
  2. Domain d1w7wb_: 1w7w B: [114328]
  3. Domain d1w7wc_: 1w7w C: [114329]
  4. Domain d1w7wd_: 1w7w D: [114330]
  5. Domain d1w7we_: 1w7w E: [114331]
  6. Domain d1w7wf_: 1w7w F: [114332]
    mutant
Plasmodium falciparum, isolate 3D7 [TaxId:5833] [117947] (1 PDB entry)
- Domains for 1xiq:
  1. Domain d1xiqa_: 1xiq A: [115361]
  2. Domain d1xiqb_: 1xiq B: [115362]
  3. Domain d1xiqc_: 1xiq C: [115363]
  4. Domain d1xiqd_: 1xiq D: [115364]
  5. Domain d1xiqe_: 1xiq E: [115365]
  6. Domain d1xiqf_: 1xiq F: [115366]
Rice(Oryza sativa) [TaxId:4530] [143285] (1 PDB entry)
- Domains for 1pku:
  1. Domain d1pkua1: 1pku A:4-151 [118718]
  2. Domain d1pkub1: 1pku B:4-151 [118719]
    automatically matched to 1PKU A:4-151
  3. Domain d1pkuc1: 1pku C:4-151 [118720]
    automatically matched to 1PKU A:4-151
  4. Domain d1pkud1: 1pku D:4-151 [118721]
    automatically matched to 1PKU A:4-151
  5. Domain d1pkue1: 1pku E:4-151 [118722]
    automatically matched to 1PKU A:4-151
  6. Domain d1pkuf1: 1pku F:4-151 [118723]
    automatically matched to 1PKU A:4-151
  7. Domain d1pkug1: 1pku G:4-151 [118724]
    automatically matched to 1PKU A:4-151
  8. Domain d1pkuh1: 1pku H:4-151 [118725]
    automatically matched to 1PKU A:4-151
  9. Domain d1pkui1: 1pku I:4-151 [118726]
    automatically matched to 1PKU A:4-151
  10. Domain d1pkuj1: 1pku J:4-151 [118727]
    automatically matched to 1PKU A:4-151
  11. Domain d1pkuk1: 1pku K:4-151 [118728]
    automatically matched to 1PKU A:4-151
  12. Domain d1pkul1: 1pku L:4-151 [118729]
    automatically matched to 1PKU A:4-151
Thale cress (Arabidopsis thaliana) [TaxId:3702] [117949] (1 PDB entry)
- Domains for 1u8w:
  1. Domain d1u8wa_: 1u8w A: [113204]
  2. Domain d1u8wb_: 1u8w B: [113205]
  3. Domain d1u8wc_: 1u8w C: [113206]
  4. Domain d1u8wd_: 1u8w D: [113207]
  5. Domain d1u8we_: 1u8w E: [113208]
  6. Domain d1u8wf_: 1u8w F: [113209]
Thale cress (Arabidopsis thaliana), chloroplast NDK2 [TaxId:3702] [117950] (2 PDB entries)
1. Domains for 1s57:
  1. Domain d1s57a_: 1s57 A: [112028]
  2. Domain d1s57b_: 1s57 B: [112029]
  3. Domain d1s57c_: 1s57 C: [112030]
  4. Domain d1s57d_: 1s57 D: [112031]
  5. Domain d1s57e_: 1s57 E: [112032]
  6. Domain d1s57f_: 1s57 F: [112033]
    complexed with epe, so4
2. Domains for 1s59:
  1. Domain d1s59a_: 1s59 A: [112034]
  2. Domain d1s59b_: 1s59 B: [112035]
  3. Domain d1s59c_: 1s59 C: [112036]
  4. Domain d1s59d_: 1s59 D: [112037]
  5. Domain d1s59e_: 1s59 E: [112038]
  6. Domain d1s59f_: 1s59 F: [112039]
    complexed with dgi, dgt
Thermus thermophilus [TaxId:274] [143289] (3 PDB entries)
1. Domains for 1wkj:
  1. Domain d1wkja1: 1wkj A:1-137 [120983]
  2. Domain d1wkjb1: 1wkj B:1-137 [120984]
    automatically matched to 1WKJ A:1-137
2. Domains for 1wkk:
  1. Domain d1wkka1: 1wkk A:1-137 [120985]
    automatically matched to 1WKJ A:1-137
    complexed with gdp
  2. Domain d1wkkb1: 1wkk B:1-137 [120986]
    automatically matched to 1WKJ A:1-137
    complexed with gdp
3. Domains for 1wkl:
  1. Domain d1wkla1: 1wkl A:1-137 [120987]
    automatically matched to 1WKJ A:1-137
    complexed with adp, atp, mg, phs
  2. Domain d1wklb1: 1wkl B:1-137 [120988]
    automatically matched to 1WKJ A:1-137
    complexed with adp, atp, mg, phs

More info for Protein Nucleoside diphosphate kinase, NDK from d.58.6.1: Nucleoside diphosphate kinase, NDK

Timeline for Protein Nucleoside diphosphate kinase, NDK from d.58.6.1: Nucleoside diphosphate kinase, NDK:

Protein Nucleoside diphosphate kinase, NDK from d.58.6.1: Nucleoside diphosphate kinase, NDK first appeared (with stable ids) in SCOP 1.55, called Protein Nucleoside diphosphate kinases from d.58.6.1: Nucleoside diphosphate kinases
Protein Nucleoside diphosphate kinase, NDK from d.58.6.1: Nucleoside diphosphate kinase, NDK appears in SCOP 1.71
Protein Nucleoside diphosphate kinase, NDK from d.58.6.1: Nucleoside diphosphate kinase, NDK appears in SCOP 1.75
Protein Nucleoside diphosphate kinase, NDK from d.58.6.1: Nucleoside diphosphate kinase, NDK appears in the current release, SCOPe 2.08