SCOPe 2.08: Family d.58.5.1: Prokaryotic signal transducing protein

Lineage for Family d.58.5.1: Prokaryotic signal transducing protein

1. Root: SCOPe 2.08

2. Class d: Alpha and beta proteins (a+b) [53931] (396 folds)

3. Fold d.58: Ferredoxin-like [54861] (62 superfamilies)
   alpha+beta sandwich with antiparallel beta-sheet; (beta-alpha-beta)x2

4. Superfamily d.58.5: GlnB-like [54913] (6 families)
   form timeric structures with the orthogonally packed beta-sheets

5. Family d.58.5.1: Prokaryotic signal transducing protein [54914] (4 proteins)

Proteins:

1. Hypothetical protein TTHA0516 [143281] (1 species)

   • Species Thermus thermophilus [TaxId:274] [143282] (1 PDB entry)
     Uniprot Q5SKX7 1-100

2. PII (product of glnB) [54915] (8 species)
   trimer with orthogonal packing of beta-sheets around the threefold axis

   1. Species Aquifex aeolicus [TaxId:63363] [188357] (3 PDB entries)

   2. Species Cyanobacteria (Synechococcus sp.) pcc 7942 [TaxId:1131] [102970] (4 PDB entries)

   3. Species Cyanobacteria (Synechococcus sp.) pcc pcc 6803 [TaxId:1131] [102971] (1 PDB entry)

   4. Species Escherichia coli [TaxId:562] [54916] (2 PDB entries)

   5. Species Escherichia coli [TaxId:83333] [332601] (1 PDB entry)

   6. Species Herbaspirillum seropedicae [TaxId:964] [89930] (1 PDB entry)

   7. Species Mycobacterium tuberculosis [TaxId:83332] [188403] (1 PDB entry)

   8. Species Thermus thermophilus [TaxId:274] [102972] (5 PDB entries)
      Uniprot P83820

3. PII-homolog GlnK [54917] (2 species)

   1. Species Escherichia coli [TaxId:562] [54918] (3 PDB entries)

   2. Species Shigella flexneri [TaxId:623] [160309] (1 PDB entry)
      Uniprot P0AC58 1-112

4. automated matches [190670] (7 species)
   not a true protein

   1. Species Azospirillum brasilense [TaxId:192] [189362] (11 PDB entries)

   2. Species Corynebacterium glutamicum [TaxId:1718] [402794] (1 PDB entry)

   3. Species Mycobacterium tuberculosis [TaxId:1773] [189389] (1 PDB entry)

   4. Species Neisseria meningitidis [TaxId:122586] [187774] (1 PDB entry)

   5. Species Streptococcus mutans [TaxId:1309] [189585] (1 PDB entry)

   6. Species Synechococcus elongatus PCC 7942 [TaxId:1140] [189437] (4 PDB entries)

   7. Species Synechococcus elongatus [TaxId:32046] [189889] (2 PDB entries)

More info for Family d.58.5.1: Prokaryotic signal transducing protein

Timeline for Family d.58.5.1: Prokaryotic signal transducing protein:

• Family d.58.5.1: Prokaryotic signal transducing protein first appeared (with stable ids) in SCOP 1.55
  
• Family d.58.5.1: Prokaryotic signal transducing protein appears in SCOPe 2.07