Lineage for Superfamily d.58.4: Dimeric alpha+beta barrel

  1. Root: SCOPe 2.06
  2. 2152203Class d: Alpha and beta proteins (a+b) [53931] (385 folds)
  3. 2172288Fold d.58: Ferredoxin-like [54861] (59 superfamilies)
    alpha+beta sandwich with antiparallel beta-sheet; (beta-alpha-beta)x2
  4. 2172847Superfamily d.58.4: Dimeric alpha+beta barrel [54909] (24 families) (S)
    dimerizes through the beta-sheet; forms beta-sheet barrel, closed (n=8, S=12); dimers may assemble in higher oligomers

Families:

  1. 2172848d.58.4.1: Muconalactone isomerase, MLI [54910] (1 protein)
    decamer: pentamer of dimers
    automatically mapped to Pfam PF02426
  2. 2172861d.58.4.2: Lrp/AsnC-like transcriptional regulator C-terminal domain [69733] (5 protein domains)
    octamer: tetramer of dimers
    automatically mapped to Pfam PF01037
  3. 2172903d.58.4.3: Actinorhodin biosynthesis monooxygenase ActVa-Orf6 [82666] (1 protein)
  4. 2172916d.58.4.4: Plant stress-induced protein [89927] (3 protein domains)
    automatically mapped to Pfam PF07876
  5. 2172957d.58.4.5: PG130-like [102959] (6 protein domains)
    subfamily of Pfam PF03992
  6. 2172998d.58.4.6: Hypothetical protein YjcS [102962] (1 protein)
  7. 2173002d.58.4.7: YciI-like [102965] (1 protein)
    structural similarity to MLI extends to the active site cavity location
    automatically mapped to Pfam PF03795
  8. 2173007d.58.4.8: Polyketide synthesis cyclase [110959] (1 protein)
    Pfam PF04673
  9. 2173011d.58.4.9: DGPF domain (Pfam 04946) [110962] (1 protein)
    there is the putative active site cavity in the equivalent location location to the MLI and YciI active sites
    automatically mapped to Pfam PF03795
  10. 2173015d.58.4.10: Chlorite dismutase-like [110965] (2 protein domains)
    Pfam PF06778; duplication: consists of two similar domains; forms a pentamer similar to the MLI decamer
  11. 2173030d.58.4.11: PA3566-like [110970] (5 protein domains)
    subfamily of Pfam PF03992
  12. 2173060d.58.4.12: Hypothetical protein YdhR [117940] (2 protein domains)
    automatically mapped to Pfam PF08803
  13. 2173071d.58.4.13: NIPSNAP [117943] (2 protein domains)
    Pfam PF07978
  14. 2173090d.58.4.14: Dyp-type peroxidase-like [143265] (4 protein domains)
    Pfam PF04261
  15. 2173111d.58.4.15: EthD-like [143272] (1 protein)
    Pfam PF07110
  16. 2173116d.58.4.16: Atu0297-like [143275] (2 protein domains)
    Pfam PF07045; DUF1330
  17. 2173123d.58.4.17: SOR-like [143278] (2 protein domains)
    Pfam PF07682; duplication: consists of two similar domains
  18. 2173154d.58.4.18: YbaA-like [160289] (1 protein)
    Pfam PF07237; DUF1428
  19. 2173159d.58.4.19: MmlI-like [160292] (2 protein domains)
    Pfam PF09448; Methylmuconolactone methyl-isomerase
  20. 2173178d.58.4.20: Marine metagenome family DABB2 [160295] (1 protein)
  21. 2173183d.58.4.21: YiiL-like [160298] (1 protein)
    Pfam PF05336; DUF718
  22. 2173190d.58.4.22: Marine metagenome family DABB1 [160301] (2 protein domains)
  23. 2173205d.58.4.23: Marine metagenome family DABB3 [160306] (1 protein)
    duplication: consists of two similar domains; forms a pentamer similar to the Chlorite dismutase-like pentamer and the MLI decamer
  24. 2173213d.58.4.0: automated matches [191316] (1 protein)
    not a true family

More info for Superfamily d.58.4: Dimeric alpha+beta barrel

Timeline for Superfamily d.58.4: Dimeric alpha+beta barrel: