Lineage for Family d.22.1.1: Fluorescent proteins

  1. Root: SCOPe 2.02
  2. 1190016Class d: Alpha and beta proteins (a+b) [53931] (376 folds)
  3. 1199112Fold d.22: GFP-like [54510] (1 superfamily)
    beta-sheet folds into a barrel (n=11, S=14) around the central helix
  4. 1199113Superfamily d.22.1: GFP-like [54511] (3 families) (S)
  5. 1199114Family d.22.1.1: Fluorescent proteins [54512] (6 proteins)

Proteins:

  1. 1199115GFP-like non-fluorescent chromoprotein FP595 [117863] (1 species)
  2. 1199118Green fluorescent protein, GFP [54513] (4 species)
    1. 1199119Species Clytia gregaria [TaxId:27801] [188531] (1 PDB entry)
    2. 1199121Species Galaxea fascicularis [TaxId:46745] [190027] (1 PDB entry)
    3. 1199124Species Jellyfish (Aequorea victoria) [TaxId:6100] [54514] (123 PDB entries)
      Uniprot P42212
    4. 1199284Species Renilla reniformis [TaxId:6136] [160126] (1 PDB entry)
      Uniprot Q963I9 7-226
  3. 1199289Pocilloporin pigment Rtms5 [89866] (1 species)
  4. 1199294Red fluorescent protein (fp583 or dsred(clontech)) [54515] (1 species)
  5. 1199308Red fluorescent protein fp61 [102854] (1 species)
  6. 1199312automated matches [190406] (14 species)
    not a true protein
    1. 1199313Species Aequorea coerulescens [TaxId:210840] [189267] (3 PDB entries)
    2. 1199320Species Artificial gene [TaxId:32630] [189424] (5 PDB entries)
    3. 1199332Species Azotobacter vinelandii [TaxId:354] [188536] (1 PDB entry)
    4. 1199334Species Cnidopus japonicus [TaxId:380086] [188533] (2 PDB entries)
    5. 1199351Species Coral (Discosoma sp.) [TaxId:86600] [188539] (17 PDB entries)
    6. 1199402Species Coral (Montipora efflorescens) [TaxId:105610] [188535] (3 PDB entries)
    7. 1199414Species Dendronephthya sp. [TaxId:191210] [188919] (1 PDB entry)
    8. 1199423Species Discosoma sp. [TaxId:301246] [188540] (5 PDB entries)
    9. 1199431Species Discosoma striata [188537] (1 PDB entry)
    10. 1199438Species Heteractis crispa [TaxId:175771] [188161] (1 PDB entry)
    11. 1199443Species Jellyfish (Aequorea victoria) [TaxId:6100] [188134] (35 PDB entries)
    12. 1199502Species Montipora sp. [TaxId:321802] [189025] (1 PDB entry)
    13. 1199505Species Sea anemone (Anemonia sulcata) [TaxId:6108] [188527] (2 PDB entries)
    14. 1199516Species Sea anemone (Entacmaea quadricolor) [TaxId:6118] [188538] (17 PDB entries)

More info for Family d.22.1.1: Fluorescent proteins

Timeline for Family d.22.1.1: Fluorescent proteins: