Lineage for Family d.22.1.1: Fluorescent proteins

  1. Root: SCOPe 2.01
  2. 1013083Class d: Alpha and beta proteins (a+b) [53931] (376 folds)
  3. 1021948Fold d.22: GFP-like [54510] (1 superfamily)
    beta-sheet folds into a barrel (n=11, S=14) around the central helix
  4. 1021949Superfamily d.22.1: GFP-like [54511] (3 families) (S)
  5. 1021950Family d.22.1.1: Fluorescent proteins [54512] (6 protein domains)

Protein Domains:

  1. 1021951GFP-like non-fluorescent chromoprotein FP595 [117863] (1 species)
  2. 1021954Green fluorescent protein, GFP [54513] (4 species)
    1. 1021955Species Clytia gregaria [TaxId:27801] [188531] (1 PDB entry)
    2. 1021957Species Galaxea fascicularis [TaxId:46745] [190027] (1 PDB entry)
    3. 1021960Species Jellyfish (Aequorea victoria) [TaxId:6100] [54514] (118 PDB entries)
      Uniprot P42212
    4. 1022115Species Renilla reniformis [TaxId:6136] [160126] (1 PDB entry)
      Uniprot Q963I9 7-226
  3. 1022120Pocilloporin pigment Rtms5 [89866] (1 species)
  4. 1022125Red fluorescent protein (fp583 or dsred(clontech)) [54515] (1 species)
  5. 1022139Red fluorescent protein fp61 [102854] (1 species)
  6. 1022143automated matches [190406] (14 species)
    not a true protein
    1. 1022144Species Aequorea coerulescens [TaxId:210840] [189267] (3 PDB entries)
    2. 1022151Species Artificial gene [TaxId:32630] [189424] (2 PDB entries)
    3. 1022160Species Azotobacter vinelandii [TaxId:354] [188536] (1 PDB entry)
    4. 1022162Species Cnidopus japonicus [TaxId:380086] [188533] (2 PDB entries)
    5. 1022179Species Coral (Discosoma sp.) [TaxId:86600] [188539] (17 PDB entries)
    6. 1022230Species Coral (Montipora efflorescens) [TaxId:105610] [188535] (1 PDB entry)
    7. 1022232Species Dendronephthya sp. [TaxId:191210] [188919] (1 PDB entry)
    8. 1022241Species Discosoma sp. [TaxId:301246] [188540] (2 PDB entries)
    9. 1022245Species Discosoma striata [188537] (1 PDB entry)
    10. 1022252Species Heteractis crispa [TaxId:175771] [188161] (1 PDB entry)
    11. 1022257Species Jellyfish (Aequorea victoria) [TaxId:6100] [188134] (27 PDB entries)
    12. 1022308Species Montipora sp. [TaxId:321802] [189025] (1 PDB entry)
    13. 1022311Species Sea anemone (Anemonia sulcata) [TaxId:6108] [188527] (2 PDB entries)
    14. 1022322Species Sea anemone (Entacmaea quadricolor) [TaxId:6118] [188538] (14 PDB entries)

More info for Family d.22.1.1: Fluorescent proteins

Timeline for Family d.22.1.1: Fluorescent proteins: