Lineage for Protein: Diaminopimelate epimerase

  1. Root: SCOPe 2.03
  2. 1396887Class d: Alpha and beta proteins (a+b) [53931] (376 folds)
  3. 1407275Fold d.21: Diaminopimelate epimerase-like [54505] (1 superfamily)
    mixed beta-sheet folds into a barrel (n=8, S=14) around the central helix
  4. 1407276Superfamily d.21.1: Diaminopimelate epimerase-like [54506] (5 families) (S)
    duplication: consists of two similar domain swapped with C-terminal strands
  5. 1407277Family d.21.1.1: Diaminopimelate epimerase [54507] (1 protein)
    automatically mapped to Pfam PF01678
  6. 1407278Protein Diaminopimelate epimerase [54508] (2 species)

Species:

  1. 1407279Escherichia coli [TaxId:83333] [234868] (2 PDB entries)
    1. Domains for 4ijz:
      1. 1407280Domain d4ijza1: 4ijz A:1-130 [234869]
        automated match to d1bwza1
        complexed with no3
      2. 1407281Domain d4ijza2: 4ijz A:131-274 [234872]
        automated match to d1gqza2
        complexed with no3
      3. 1407282Domain d4ijzb1: 4ijz B:1-130 [234870]
        automated match to d1bwza1
        complexed with no3
      4. 1407283Domain d4ijzb2: 4ijz B:131-275 [234871]
        automated match to d1gqza2
        complexed with no3
    2. Domains for 4ik0:
      1. 1407284Domain d4ik0a1: 4ik0 A:1-130 [234873]
        automated match to d1bwza1
        complexed with iod; mutant
      2. 1407285Domain d4ik0a2: 4ik0 A:131-274 [234874]
        automated match to d1gqza2
        complexed with iod; mutant
      3. 1407286Domain d4ik0b1: 4ik0 B:1-130 [234875]
        automated match to d1bwza1
        complexed with iod; mutant
      4. 1407287Domain d4ik0b2: 4ik0 B:131-275 [234876]
        automated match to d1gqza2
        complexed with iod; mutant
  2. 1407288Haemophilus influenzae [TaxId:727] [54509] (6 PDB entries)
    1. Domains for 1bwz:
      1. 1407299Domain d1bwza1: 1bwz A:1-130 [38337]
      2. 1407300Domain d1bwza2: 1bwz A:131-274 [38338]
    2. Domains for 1gqz:
      1. 1407293Domain d1gqza1: 1gqz A:1-130 [83311]
      2. 1407294Domain d1gqza2: 1gqz A:131-274 [83312]
    3. Domains for 2gke:
      1. 1407289Domain d2gkea1: 2gke A:1-130 [135329]
        automated match to d1gqza1
        complexed with acy, gol, zdp
      2. 1407290Domain d2gkea2: 2gke A:131-274 [135330]
        automated match to d1gqza2
        complexed with acy, gol, zdp
    4. Domains for 2gkj:
      1. 1407291Domain d2gkja1: 2gkj A:1-130 [135331]
        automated match to d1gqza1
        complexed with acy, zdr
      2. 1407292Domain d2gkja2: 2gkj A:131-274 [135332]
        automated match to d1gqza2
        complexed with acy, zdr
    5. Domains for 2q9h:
      1. 1407297Domain d2q9ha1: 2q9h A:1-130 [150143]
        automatically matched to d1bwza1
        complexed with acy, tla; mutant
      2. 1407298Domain d2q9ha2: 2q9h A:131-274 [150144]
        automatically matched to d1bwza2
        complexed with acy, tla; mutant
    6. Domains for 2q9j:
      1. 1407295Domain d2q9ja1: 2q9j A:1-130 [150145]
        automatically matched to d1bwza1
        complexed with edo, so4; mutant
      2. 1407296Domain d2q9ja2: 2q9j A:131-274 [150146]
        automatically matched to d1bwza2
        complexed with edo, so4; mutant

More info for Protein Diaminopimelate epimerase from d.21.1.1: Diaminopimelate epimerase

Timeline for Protein Diaminopimelate epimerase from d.21.1.1: Diaminopimelate epimerase: