Species:

1. Baker's yeast (Saccharomyces cerevisiae), mms2 [TaxId:4932] [64241] (2 PDB entries)

   1. Domain for 1jat:

      • Domain d1jatb_: 1jat B: [62819] complexed with ubc13

   2. Domain for 2gmi:

      • Domain d2gmib1: 2gmi B:3-137 [135381] Other proteins in same PDB: d2gmic1 automatically matched to d1jatb_ mutant

2. Baker's yeast (Saccharomyces cerevisiae), ubc1 [TaxId:4932] [69685] (3 PDB entries) Uniprot P21734

   1. Domain for 1fxt:

      • Domain d1fxta_: 1fxt A: [65055] Other proteins in same PDB: d1fxtb_

   2. Domains for 1fzy:

      1. Domain d1fzya_: 1fzy A: [65072]

      2. Domain d1fzyb_: 1fzy B: [65073]

   3. Domain for 1tte:

      • Domain d1ttea2: 1tte A:2-160 [107296] Other proteins in same PDB: d1ttea1 mutant

3. Baker's yeast (Saccharomyces cerevisiae), ubc13 [TaxId:4932] [64239] (3 PDB entries)

   1. Domain for 1jat:

      • Domain d1jata_: 1jat A: [62818] complexed with Mms2

   2. Domains for 1jbb:

      1. Domain d1jbba_: 1jbb A: [62842]

      2. Domain d1jbbb_: 1jbb B: [62843]

   3. Domain for 2gmi:

      • Domain d2gmia1: 2gmi A:1-152 [145218] Other proteins in same PDB: d2gmic1 mutant

4. Baker's yeast (Saccharomyces cerevisiae), ubc2 (RAD6) [TaxId:4932] [54499] (1 PDB entry)

   • Domains for 1ayz:

     1. Domain d1ayza_: 1ayz A: [38326]

     2. Domain d1ayzb_: 1ayz B: [38327]

     3. Domain d1ayzc_: 1ayz C: [38328]

5. Baker's yeast (Saccharomyces cerevisiae), ubc4 [TaxId:4932] [54500] (1 PDB entry)

   • Domain for 1qcq:

     • Domain d1qcqa_: 1qcq A: [38329]

6. Baker's yeast (Saccharomyces cerevisiae), ubc7 [TaxId:4932] [54501] (1 PDB entry)

   • Domain for 2ucz:

     • Domain d2ucza_: 2ucz A: [38330]

7. Caenorhabditis elegans, E2 2 [TaxId:6239] [143060] (1 PDB entry) Uniprot P35129 1-147

   • Domain for 1z2u:

     • Domain d1z2ua1: 1z2u A:1-147 [124389] complexed with bu3, cl, na, unx

8. Clam (Spisula solidissima), E-2C [TaxId:6584] [54504] (1 PDB entry)

   • Domain for 2e2c:

     • Domain d2e2ca_: 2e2c A: [38336]

9. Human (Homo sapiens), E2 D3 [TaxId:9606] [143054] (2 PDB entries) Uniprot P61077 1-147

   1. Domains for 1x23:

      1. Domain d1x23a1: 1x23 A:1-147 [121615]

      2. Domain d1x23b1: 1x23 B:1-147 [121616] automatically matched to 1X23 A:1-147

      3. Domain d1x23c1: 1x23 C:1-147 [121617] automatically matched to 1X23 A:1-147

      4. Domain d1x23d1: 1x23 D:1-147 [121618] automatically matched to 1X23 A:1-147

   2. Domain for 2fuh:

      • Domain d2fuha1: 2fuh A:2-147 [134173] Other proteins in same PDB: d2fuhb1 automatically matched to 1X23 A:1-147

10. Human (Homo sapiens), E2 G1 [TaxId:9606] [143056] (1 PDB entry) Uniprot P62253 7-131

    • Domain for 2awf:

      • Domain d2awfa1: 2awf A:7-131 [127432]

11. Human (Homo sapiens), E2 H [TaxId:9606] [143055] (1 PDB entry) Uniprot P62256 4-155

    • Domains for 1yh6:

      1. Domain d1yh6a1: 1yh6 A:23-174 [123160]

      2. Domain d1yh6b1: 1yh6 B:25-174 [123161] automatically matched to 1YH6 A:23-174

12. Human (Homo sapiens), E2 J2 [TaxId:9606] [143050] (1 PDB entry) Uniprot Q5T7L1 12-168 ubc6 homologue

    • Domains for 2f4w:

      1. Domain d2f4wa1: 2f4w A:12-168 [132958]

      2. Domain d2f4wb1: 2f4w B:12-168 [132959] automatically matched to 2F4W A:12-168

13. Human (Homo sapiens), E2 L6 [TaxId:9606] [143052] (2 PDB entries) Uniprot O14933 2-151

    1. Domains for 1wzv:

       1. Domain d1wzva1: 1wzv A:2-151 [121529]

       2. Domain d1wzvb1: 1wzv B:2-151 [121530] automatically matched to 1WZV A:2-151

    2. Domain for 1wzw:

       • Domain d1wzwa1: 1wzw A:2-151 [121531] automatically matched to 1WZV A:2-151

14. Human (Homo sapiens), E2 M [TaxId:9606] [143058] (2 PDB entries) Uniprot P61081 27-183 the extra N-terminal peptide, bound to the heterodimeric E1 enzyme for NEDD8, can be seen in the PDB entry 1tt5, chains E and F

    1. Domain for 1y8x:

       • Domain d1y8xa1: 1y8x A:27-183 [122769] Other proteins in same PDB: d1y8xb1

    2. Domain for 2nvu:

       • Domain d2nvuc1: 2nvu C:3-183 [145698] Other proteins in same PDB: d2nvua1, d2nvub1, d2nvub2, d2nvui1, d2nvuj1 complexed with atp, mg, zn; mutant

15. Human (Homo sapiens), E2 T [TaxId:9606] [143057] (1 PDB entry) Uniprot Q9NPD8 1-154 Hspc150

    • Domain for 1yh2:

      • Domain d1yh2a1: 1yh2 A:1-154 [123158]

16. Human (Homo sapiens), E2 U [TaxId:9606] [143053] (1 PDB entry) Uniprot Q5VVX9 1-148

    • Domain for 1yrv:

      • Domain d1yrva1: 1yrv A:1-148 [123941]

17. Human (Homo sapiens), E2 variant 1 [TaxId:9606] [143051] (2 PDB entries) Uniprot Q13404 80-221! Uniprot Q13404 82-220

    1. Domain for 2a4d:

       • Domain d2a4da1: 2a4d A:82-220 [126152]

    2. Domains for 2c2v:

       1. Domain d2c2vc1: 2c2v C:33-174 [129687] Other proteins in same PDB: d2c2vs1, d2c2vt1, d2c2vu1, d2c2vv1

       2. Domain d2c2vf1: 2c2v F:36-174 [129689] Other proteins in same PDB: d2c2vs1, d2c2vt1, d2c2vu1, d2c2vv1 automatically matched to 2C2V C:33-174

       3. Domain d2c2vi1: 2c2v I:36-174 [129691] Other proteins in same PDB: d2c2vs1, d2c2vt1, d2c2vu1, d2c2vv1 automatically matched to 2C2V C:33-174

       4. Domain d2c2vl1: 2c2v L:36-174 [129693] Other proteins in same PDB: d2c2vs1, d2c2vt1, d2c2vu1, d2c2vv1 automatically matched to 2C2V C:33-174

18. Human (Homo sapiens), mms2 [TaxId:9606] [64242] (3 PDB entries)

    1. Domain for 1j74:

       • Domain d1j74a_: 1j74 A: [62672]

    2. Domain for 1j7d:

       • Domain d1j7da_: 1j7d A: [62680] complexed with ubc13

    3. Domain for 1zgu:

       • Domain d1zgua1: 1zgu A:12-150 [125061] Other proteins in same PDB: d1zgub1 automatically matched to d1j7da_ mutant

19. Human (Homo sapiens), ubc13 [TaxId:9606] [64240] (2 PDB entries)

    1. Domain for 1j7d:

       • Domain d1j7db_: 1j7d B: [62681] complexed with Mms2

    2. Domains for 2c2v:

       1. Domain d2c2vb1: 2c2v B:6-154 [129686] Other proteins in same PDB: d2c2vs1, d2c2vt1, d2c2vu1, d2c2vv1 automatically matched to d1j7db_

       2. Domain d2c2ve1: 2c2v E:6-154 [129688] Other proteins in same PDB: d2c2vs1, d2c2vt1, d2c2vu1, d2c2vv1 automatically matched to d1j7db_

       3. Domain d2c2vh1: 2c2v H:6-154 [129690] Other proteins in same PDB: d2c2vs1, d2c2vt1, d2c2vu1, d2c2vv1 automatically matched to d1j7db_

       4. Domain d2c2vk1: 2c2v K:6-154 [129692] Other proteins in same PDB: d2c2vs1, d2c2vt1, d2c2vu1, d2c2vv1 automatically matched to d1j7db_

20. Human (Homo sapiens), ubc2b [TaxId:9606] [102840] (1 PDB entry) E2-17 kDa

    • Domain for 1jas:

      • Domain d1jasa_: 1jas A: [90882]

21. Human (Homo sapiens), ubc9 [TaxId:9606] [54503] (11 PDB entries) identical sequence in many other species

    1. Domain for 1a3s:

       • Domain d1a3sa_: 1a3s A: [38335]

    2. Domains for 1kps:

       1. Domain d1kpsa_: 1kps A: [68786] Other proteins in same PDB: d1kpsb_, d1kpsd_

       2. Domain d1kpsc_: 1kps C: [68788] Other proteins in same PDB: d1kpsb_, d1kpsd_ complexed with so4

    3. Domain for 1u9a:

       • Domain d1u9aa_: 1u9a A: [38333] CASP2

    4. Domain for 1u9b:

       • Domain d1u9ba_: 1u9b A: [38334] mutant

    5. Domain for 1z5s:

       • Domain d1z5sa1: 1z5s A:2-157 [124491] Other proteins in same PDB: d1z5sb1, d1z5sc1 automatically matched to d1u9aa_

    6. Domain for 2grn:

       • Domain d2grna1: 2grn A:1-157 [135568] Other proteins in same PDB: d2grnb1 automatically matched to d1u9aa_

    7. Domains for 2o25:

       1. Domain d2o25c1: 2o25 C:2-158 [138890] Other proteins in same PDB: d2o25a1, d2o25a2, d2o25b1, d2o25b2 automatically matched to d1u9aa_

       2. Domain d2o25d1: 2o25 D:2-157 [138891] Other proteins in same PDB: d2o25a1, d2o25a2, d2o25b1, d2o25b2 automatically matched to d1u9aa_

    8. Domain for 2pe6:

       • Domain d2pe6a1: 2pe6 A:1-157 [139667] Other proteins in same PDB: d2pe6b1 automatically matched to d1u9aa_

    9. Domain for 2px9:

       • Domain d2px9b1: 2px9 B:1-158 [149906] automatically matched to d1u9aa_

    10. Domain for 2uyz:

        • Domain d2uyza1: 2uyz A:3-158 [145768] Other proteins in same PDB: d2uyzb1 annotated as mouse protein in PDB complexed with na; mutant

    11. Domain for 2vrr:

        • Domain d2vrra1: 2vrr A:2-158 [153522] Other proteins in same PDB: d2vrrb1 automatically matched to d1u9aa_ complexed with fmt, na

22. Human (Homo sapiens), ubch10 [TaxId:9606] [64243] (1 PDB entry)

    • Domains for 1i7k:

      1. Domain d1i7ka_: 1i7k A: [61889]

      2. Domain d1i7kb_: 1i7k B: [61890] mutant

23. Human (Homo sapiens), ubch5b [TaxId:9606] [102841] (8 PDB entries) Uniprot P62837 E2-17 kDa 2

    1. Domain for 1ur6:

       • Domain d1ur6a_: 1ur6 A: [99811] Other proteins in same PDB: d1ur6b_ complexed with zn

    2. Domain for 1w4u:

       • Domain d1w4ua_: 1w4u A: [114194]

    3. Domains for 2c4o:

       1. Domain d2c4oa1: 2c4o A:1-147 [129838] automatically matched to d1ur6a_ complexed with gol, so4

       2. Domain d2c4ob1: 2c4o B:1-147 [129839] automatically matched to d1ur6a_ complexed with gol, so4

       3. Domain d2c4oc1: 2c4o C:1-147 [129840] automatically matched to d1ur6a_ complexed with gol, so4

       4. Domain d2c4od1: 2c4o D:1-147 [129841] automatically matched to d1ur6a_ complexed with gol, so4

    4. Domains for 2clw:

       1. Domain d2clwa1: 2clw A:1-147 [130596] automatically matched to d1ur6a_ complexed with gol, so4

       2. Domain d2clwb1: 2clw B:1-147 [130597] automatically matched to d1ur6a_ complexed with gol, so4

       3. Domain d2clwc1: 2clw C:1-147 [130598] automatically matched to d1ur6a_ complexed with gol, so4

       4. Domain d2clwd1: 2clw D:1-147 [130599] automatically matched to d1ur6a_ complexed with gol, so4

    5. Domain for 2esk:

       • Domain d2eska1: 2esk A:1-147 [132326] automatically matched to d1ur6a_

    6. Domain for 2eso:

       • Domain d2esoa1: 2eso A:1-147 [132341] mutant

    7. Domain for 2esp:

       • Domain d2espa1: 2esp A:1-147 [132342] complexed with cl, mpd; mutant

    8. Domain for 2esq:

       • Domain d2esqa1: 2esq A:1-147 [132343] mutant

24. Human (Homo sapiens), ubch7 [TaxId:9606] [54502] (2 PDB entries)

    1. Domain for 1c4z:

       • Domain d1c4zd_: 1c4z D: [38331] Other proteins in same PDB: d1c4za_, d1c4zb_, d1c4zc_

    2. Domain for 1fbv:

       • Domain d1fbvc_: 1fbv C: [38332] Other proteins in same PDB: d1fbva1, d1fbva2, d1fbva3, d1fbva4 complexed with so4, zn

25. Human (Homo sapiens), ubch8 [TaxId:9606] [117850] (1 PDB entry) Uniprot Q96LR5 54-201

    • Domains for 1y6l:

      1. Domain d1y6la_: 1y6l A: [116509]

      2. Domain d1y6lb_: 1y6l B: [116510]

      3. Domain d1y6lc_: 1y6l C: [116511]

26. Human(Homo sapiens), E2 S [TaxId:9606] [143048] (1 PDB entry) Uniprot Q16763 6-156

    • Domains for 1zdn:

      1. Domain d1zdna1: 1zdn A:6-156 [124943] complexed with na

      2. Domain d1zdnb1: 1zdn B:10-156 [124944] automatically matched to 1ZDN A:6-156 complexed with na

27. Leishmania major [TaxId:5664] [143049] (1 PDB entry) Uniprot Q4Q5L3 9-166 Ubiquitin carrier protein 4, putative

    • Domains for 1yf9:

      1. Domain d1yf9a1: 1yf9 A:13-170 [123054] complexed with cl

      2. Domain d1yf9b1: 1yf9 B:13-170 [123055] automatically matched to 1YF9 A:13-170 complexed with cl

      3. Domain d1yf9c1: 1yf9 C:13-170 [123056] automatically matched to 1YF9 A:13-170 complexed with cl

28. Nematode (Caenorhabditis elegans), E2-19 kDa [TaxId:6239] [89862] (1 PDB entry)

    • Domain for 1pzv:

      • Domain d1pzva_: 1pzv A: [88342]

29. Nematode (Caenorhabditis elegans), E2-21.5 kDa [TaxId:6239] [102842] (2 PDB entries)

    1. Domains for 1q34:

       1. Domain d1q34a_: 1q34 A: [95658]

       2. Domain d1q34b_: 1q34 B: [95659]

       3. Domain d1q34c_: 1q34 C: [95660]

    2. Domain for 1z3d:

       • Domain d1z3da1: 1z3d A:2-150 [124399] automatically matched to d1q34a_

30. Thale cress (Arabidopsis thaliana) [TaxId:3702] [54498] (1 PDB entry)

    • Domain for 2aak:

      • Domain d2aaka_: 2aak A: [38325]

31. Toxoplasma gondii [TaxId:5811] [143059] (1 PDB entry)

    • Domain for 2ayv:

      • Domain d2ayva1: 2ayv A:1-146 [127572] complexed with unx

32. Xenopus laevis [TaxId:8355] [160080] (1 PDB entry)

    • Domain for 3eb6:

      • Domain d3eb6b1: 3eb6 B:1-147 [158081] automatically matched to d1ur6a_ complexed with zn

More info for Protein Ubiquitin conjugating enzyme, UBC from d.20.1.1: UBC-related

Timeline for Protein Ubiquitin conjugating enzyme, UBC from d.20.1.1: UBC-related:

• Protein Ubiquitin conjugating enzyme, UBC from d.20.1.1: UBC-related first appeared (with stable ids) in SCOP 1.55, called Protein Ubiquitin conjugating enzyme from d.20.1.1: Ubiquitin conjugating enzyme
  
• Protein Ubiquitin conjugating enzyme, UBC from d.20.1.1: UBC-related appears in SCOP 1.73
  
• Protein Ubiquitin conjugating enzyme, UBC from d.20.1.1: UBC-related appears in SCOPe 2.01
  
• Protein Ubiquitin conjugating enzyme, UBC from d.20.1.1: UBC-related appears in the current release, SCOPe 2.08