Lineage for Protein: Ubiquitin conjugating enzyme, UBC

  1. Root: SCOP 1.73
  2. 713694Class d: Alpha and beta proteins (a+b) [53931] (334 folds)
  3. 720005Fold d.20: UBC-like [54494] (1 superfamily)
    alpha-beta(4)-alpha(3); core: meander beta-sheet plus one helix 2
  4. 720006Superfamily d.20.1: UBC-like [54495] (4 families) (S)
  5. 720007Family d.20.1.1: UBC-related [54496] (6 proteins)
  6. 720015Protein Ubiquitin conjugating enzyme, UBC [54497] (31 species)

Species:

  1. 720016Arabidopsis thaliana [TaxId:3702] [54498] (1 PDB entry)
  2. 720018Baker's yeast (Saccharomyces cerevisiae), mms2 [TaxId:4932] [64241] (2 PDB entries)
    1. Domain for 1jat:
    2. Domain for 2gmi:
  3. 720021Baker's yeast (Saccharomyces cerevisiae), ubc1 [TaxId:4932] [69685] (3 PDB entries)
    1. Domain for 1fxt:
    2. Domains for 1fzy:
      1. 720022Domain d1fzya_: 1fzy A: [65072]
      2. 720023Domain d1fzyb_: 1fzy B: [65073]
    3. Domain for 1tte:
  4. 720026Baker's yeast (Saccharomyces cerevisiae), ubc13 [TaxId:4932] [64239] (2 PDB entries)
    1. Domain for 1jat:
    2. Domains for 1jbb:
      1. 720028Domain d1jbba_: 1jbb A: [62842]
      2. 720029Domain d1jbbb_: 1jbb B: [62843]
  5. 720030Baker's yeast (Saccharomyces cerevisiae), ubc2 (RAD6) [TaxId:4932] [54499] (1 PDB entry)
  6. 720034Baker's yeast (Saccharomyces cerevisiae), ubc4 [TaxId:4932] [54500] (1 PDB entry)
  7. 720036Baker's yeast (Saccharomyces cerevisiae), ubc7 [TaxId:4932] [54501] (1 PDB entry)
  8. 720038Caenorhabditis elegans, E2 2 [TaxId:6239] [143060] (1 PDB entry)
  9. 720040Clam (Spisula solidissima), E-2C [TaxId:6584] [54504] (1 PDB entry)
  10. 720042Human (Homo sapiens), E2 D3 [TaxId:9606] [143054] (2 PDB entries)
    1. Domains for 1x23:
      1. 720043Domain d1x23a1: 1x23 A:1-147 [121615]
      2. 720044Domain d1x23b1: 1x23 B:1-147 [121616]
        automatically matched to 1X23 A:1-147
      3. 720045Domain d1x23c1: 1x23 C:1-147 [121617]
        automatically matched to 1X23 A:1-147
      4. 720046Domain d1x23d1: 1x23 D:1-147 [121618]
        automatically matched to 1X23 A:1-147
    2. Domain for 2fuh:
  11. 720048Human (Homo sapiens), E2 G1 [TaxId:9606] [143056] (1 PDB entry)
  12. 720050Human (Homo sapiens), E2 H [TaxId:9606] [143055] (1 PDB entry)
  13. 720053Human (Homo sapiens), E2 J2 [TaxId:9606] [143050] (1 PDB entry)
    ubc6 homologue
  14. 720056Human (Homo sapiens), E2 L6 [TaxId:9606] [143052] (2 PDB entries)
    1. Domains for 1wzv:
      1. 720057Domain d1wzva1: 1wzv A:2-151 [121529]
      2. 720058Domain d1wzvb1: 1wzv B:2-151 [121530]
        automatically matched to 1WZV A:2-151
    2. Domain for 1wzw:
  15. 720060Human (Homo sapiens), E2 M [TaxId:9606] [143058] (1 PDB entry)
    the extra N-terminal peptide, bound to the heterodimeric E1 enzyme for NEDD8, can be seen in the PDB entry 1tt5, chains E and F
  16. 720062Human (Homo sapiens), E2 T [TaxId:9606] [143057] (1 PDB entry)
    Hspc150
  17. 720064Human (Homo sapiens), E2 U [TaxId:9606] [143053] (1 PDB entry)
  18. 720066Human (Homo sapiens), E2 variant 1 [TaxId:9606] [143051] (2 PDB entries)
    1. Domain for 2a4d:
    2. Domains for 2c2v:
      1. 720068Domain d2c2vc1: 2c2v C:33-174 [129687]
        Other proteins in same PDB: d2c2vs1, d2c2vt1, d2c2vu1, d2c2vv1
      2. 720069Domain d2c2vf1: 2c2v F:36-174 [129689]
        Other proteins in same PDB: d2c2vs1, d2c2vt1, d2c2vu1, d2c2vv1
        automatically matched to 2C2V C:33-174
      3. 720070Domain d2c2vi1: 2c2v I:36-174 [129691]
        Other proteins in same PDB: d2c2vs1, d2c2vt1, d2c2vu1, d2c2vv1
        automatically matched to 2C2V C:33-174
      4. 720071Domain d2c2vl1: 2c2v L:36-174 [129693]
        Other proteins in same PDB: d2c2vs1, d2c2vt1, d2c2vu1, d2c2vv1
        automatically matched to 2C2V C:33-174
  19. 720072Human (Homo sapiens), mms2 [TaxId:9606] [64242] (3 PDB entries)
    1. Domain for 1j74:
    2. Domain for 1j7d:
    3. Domain for 1zgu:
  20. 720076Human (Homo sapiens), ubc13 [TaxId:9606] [64240] (2 PDB entries)
    1. Domain for 1j7d:
    2. Domains for 2c2v:
      1. 720078Domain d2c2vb1: 2c2v B:6-154 [129686]
        Other proteins in same PDB: d2c2vs1, d2c2vt1, d2c2vu1, d2c2vv1
        automatically matched to d1j7db_
      2. 720079Domain d2c2ve1: 2c2v E:6-154 [129688]
        Other proteins in same PDB: d2c2vs1, d2c2vt1, d2c2vu1, d2c2vv1
        automatically matched to d1j7db_
      3. 720080Domain d2c2vh1: 2c2v H:6-154 [129690]
        Other proteins in same PDB: d2c2vs1, d2c2vt1, d2c2vu1, d2c2vv1
        automatically matched to d1j7db_
      4. 720081Domain d2c2vk1: 2c2v K:6-154 [129692]
        Other proteins in same PDB: d2c2vs1, d2c2vt1, d2c2vu1, d2c2vv1
        automatically matched to d1j7db_
  21. 720082Human (Homo sapiens), ubc2b [TaxId:9606] [102840] (1 PDB entry)
    E2-17 kDa
  22. 720084Human (Homo sapiens), ubc9 [TaxId:9606] [54503] (8 PDB entries)
    identical sequence in many other species
    1. Domain for 1a3s:
    2. Domains for 1kps:
      1. 720089Domain d1kpsa_: 1kps A: [68786]
        Other proteins in same PDB: d1kpsb_, d1kpsd_
      2. 720090Domain d1kpsc_: 1kps C: [68788]
        Other proteins in same PDB: d1kpsb_, d1kpsd_
        complexed with so4
    3. Domain for 1u9a:
    4. Domain for 1u9b:
    5. Domain for 1z5s:
    6. Domain for 2grn:
    7. Domains for 2o25:
      1. 720092Domain d2o25c1: 2o25 C:2-158 [138890]
        Other proteins in same PDB: d2o25a1, d2o25a2, d2o25b1, d2o25b2
        automatically matched to d1u9aa_
      2. 720093Domain d2o25d1: 2o25 D:2-157 [138891]
        Other proteins in same PDB: d2o25a1, d2o25a2, d2o25b1, d2o25b2
        automatically matched to d1u9aa_
    8. Domain for 2pe6:
  23. 720095Human (Homo sapiens), ubch10 [TaxId:9606] [64243] (1 PDB entry)
  24. 720098Human (Homo sapiens), ubch5b [TaxId:9606] [102841] (8 PDB entries)
    E2-17 kDa 2
    1. Domain for 1ur6:
    2. Domain for 1w4u:
    3. Domains for 2c4o:
      1. 720103Domain d2c4oa1: 2c4o A:1-147 [129838]
        automatically matched to d1ur6a_
        complexed with gol, so4
      2. 720104Domain d2c4ob1: 2c4o B:1-147 [129839]
        automatically matched to d1ur6a_
        complexed with gol, so4
      3. 720105Domain d2c4oc1: 2c4o C:1-147 [129840]
        automatically matched to d1ur6a_
        complexed with gol, so4
      4. 720106Domain d2c4od1: 2c4o D:1-147 [129841]
        automatically matched to d1ur6a_
        complexed with gol, so4
    4. Domains for 2clw:
      1. 720107Domain d2clwa1: 2clw A:1-147 [130596]
        automatically matched to d1ur6a_
        complexed with gol, so4
      2. 720108Domain d2clwb1: 2clw B:1-147 [130597]
        automatically matched to d1ur6a_
        complexed with gol, so4
      3. 720109Domain d2clwc1: 2clw C:1-147 [130598]
        automatically matched to d1ur6a_
        complexed with gol, so4
      4. 720110Domain d2clwd1: 2clw D:1-147 [130599]
        automatically matched to d1ur6a_
        complexed with gol, so4
    5. Domain for 2esk:
    6. Domain for 2eso:
    7. Domain for 2esp:
    8. Domain for 2esq:
  25. 720113Human (Homo sapiens), ubch7 [TaxId:9606] [54502] (2 PDB entries)
    1. Domain for 1c4z:
    2. Domain for 1fbv:
  26. 720116Human (Homo sapiens), ubch8 [TaxId:9606] [117850] (1 PDB entry)
  27. 720120Human(Homo sapiens), E2 S [TaxId:9606] [143048] (1 PDB entry)
  28. 720123Leishmania major [TaxId:5664] [143049] (1 PDB entry)
    Ubiquitin carrier protein 4, putative
  29. 720127Nematode (Caenorhabditis elegans), E2-19 kDa [TaxId:6239] [89862] (1 PDB entry)
  30. 720129Nematode (Caenorhabditis elegans), E2-21.5 kDa [TaxId:6239] [102842] (2 PDB entries)
    1. Domains for 1q34:
      1. 720131Domain d1q34a_: 1q34 A: [95658]
      2. 720132Domain d1q34b_: 1q34 B: [95659]
      3. 720133Domain d1q34c_: 1q34 C: [95660]
    2. Domain for 1z3d:
  31. 720134Toxoplasma gondii [TaxId:5811] [143059] (1 PDB entry)

More info for Protein Ubiquitin conjugating enzyme, UBC from d.20.1.1: UBC-related

Timeline for Protein Ubiquitin conjugating enzyme, UBC from d.20.1.1: UBC-related: