SCOP 1.67: Protein: Ubiquitin conjugating enzyme, UBC

Lineage for Protein: Ubiquitin conjugating enzyme, UBC

Root: SCOP 1.67
Class d: Alpha and beta proteins (a+b) [53931] (260 folds)
Fold d.20: UBC-like [54494] (1 superfamily)
alpha-beta(4)-alpha(3); core: meander beta-sheet plus one helix 2
Superfamily d.20.1: UBC-like [54495] (2 families)
Family d.20.1.1: Ubiquitin conjugating enzyme, UBC [54496] (1 protein)
Protein Ubiquitin conjugating enzyme, UBC [54497] (17 species)

Species:

Arabidopsis thaliana [TaxId:3702] [54498] (1 PDB entry)
- Domain for 2aak:
  - Domain d2aak__: 2aak - [38325]
Baker's yeast (Saccharomyces cerevisiae), mms2 [TaxId:4932] [64241] (1 PDB entry)
- Domain for 1jat:
  - Domain d1jatb_: 1jat B: [62819]
    complexed with ubc13
Baker's yeast (Saccharomyces cerevisiae), ubc1 [TaxId:4932] [69685] (2 PDB entries)
1. Domain for 1fxt:
  - Domain d1fxta_: 1fxt A: [65055]
    Other proteins in same PDB: d1fxtb_
2. Domains for 1fzy:
  1. Domain d1fzya_: 1fzy A: [65072]
  2. Domain d1fzyb_: 1fzy B: [65073]
Baker's yeast (Saccharomyces cerevisiae), ubc13 [TaxId:4932] [64239] (2 PDB entries)
1. Domain for 1jat:
  - Domain d1jata_: 1jat A: [62818]
    complexed with Mms2
2. Domains for 1jbb:
  1. Domain d1jbba_: 1jbb A: [62842]
  2. Domain d1jbbb_: 1jbb B: [62843]
Baker's yeast (Saccharomyces cerevisiae), ubc2 (RAD6) [TaxId:4932] [54499] (1 PDB entry)
- Domains for 1ayz:
  1. Domain d1ayza_: 1ayz A: [38326]
  2. Domain d1ayzb_: 1ayz B: [38327]
  3. Domain d1ayzc_: 1ayz C: [38328]
Baker's yeast (Saccharomyces cerevisiae), ubc4 [TaxId:4932] [54500] (1 PDB entry)
- Domain for 1qcq:
  - Domain d1qcqa_: 1qcq A: [38329]
Baker's yeast (Saccharomyces cerevisiae), ubc7 [TaxId:4932] [54501] (1 PDB entry)
- Domain for 2ucz:
  - Domain d2ucz__: 2ucz - [38330]
Clam (Spisula solidissima), E-2C [TaxId:6584] [54504] (1 PDB entry)
- Domain for 2e2c:
  - Domain d2e2c__: 2e2c - [38336]
Human (Homo sapiens), mms2 [TaxId:9606] [64242] (2 PDB entries)
1. Domain for 1j74:
  - Domain d1j74a_: 1j74 A: [62672]
2. Domain for 1j7d:
  - Domain d1j7da_: 1j7d A: [62680]
    complexed with ubc13
Human (Homo sapiens), ubc13 [TaxId:9606] [64240] (1 PDB entry)
- Domain for 1j7d:
  - Domain d1j7db_: 1j7d B: [62681]
    complexed with Mms2
Human (Homo sapiens), ubc2b [TaxId:9606] [102840] (1 PDB entry)
E2-17 kDa
- Domain for 1jas:
  - Domain d1jasa_: 1jas A: [90882]
Human (Homo sapiens), ubc9 [TaxId:9606] [54503] (4 PDB entries)
identical sequence in many other species
1. Domain for 1a3s:
  - Domain d1a3s__: 1a3s - [38335]
2. Domains for 1kps:
  1. Domain d1kpsa_: 1kps A: [68786]
    Other proteins in same PDB: d1kpsb_, d1kpsd_
  2. Domain d1kpsc_: 1kps C: [68788]
    Other proteins in same PDB: d1kpsb_, d1kpsd_
    complexed with so4
3. Domain for 1u9a:
  - Domain d1u9aa_: 1u9a A: [38333]
    CASP2
4. Domain for 1u9b:
  - Domain d1u9b__: 1u9b - [38334]
    mutant
Human (Homo sapiens), ubch10 [TaxId:9606] [64243] (1 PDB entry)
- Domains for 1i7k:
  1. Domain d1i7ka_: 1i7k A: [61889]
  2. Domain d1i7kb_: 1i7k B: [61890]
    mutant
Human (Homo sapiens), ubch5b [TaxId:9606] [102841] (1 PDB entry)
E2-17 kDa 2
- Domain for 1ur6:
  - Domain d1ur6a_: 1ur6 A: [99811]
    Other proteins in same PDB: d1ur6b_
    complexed with zn
Human (Homo sapiens), ubch7 [TaxId:9606] [54502] (2 PDB entries)
1. Domain for 1c4z:
  - Domain d1c4zd_: 1c4z D: [38331]
    Other proteins in same PDB: d1c4za_, d1c4zb_, d1c4zc_
2. Domain for 1fbv:
  - Domain d1fbvc_: 1fbv C: [38332]
    Other proteins in same PDB: d1fbva1, d1fbva2, d1fbva3, d1fbva4
    complexed with so4, zn
Nematode (Caenorhabditis elegans), E2-19 kDa [TaxId:6239] [89862] (1 PDB entry)
- Domain for 1pzv:
  - Domain d1pzva_: 1pzv A: [88342]
Nematode (Caenorhabditis elegans), E2-21.5 kDa [TaxId:6239] [102842] (1 PDB entry)
- Domains for 1q34:
  1. Domain d1q34a_: 1q34 A: [95658]
  2. Domain d1q34b_: 1q34 B: [95659]
  3. Domain d1q34c_: 1q34 C: [95660]

More info for Protein Ubiquitin conjugating enzyme, UBC from d.20.1.1: Ubiquitin conjugating enzyme, UBC

Timeline for Protein Ubiquitin conjugating enzyme, UBC from d.20.1.1: Ubiquitin conjugating enzyme, UBC:

Protein Ubiquitin conjugating enzyme, UBC from d.20.1.1: Ubiquitin conjugating enzyme, UBC first appeared (with stable ids) in SCOP 1.55, called Protein Ubiquitin conjugating enzyme from d.20.1.1: Ubiquitin conjugating enzyme
Protein Ubiquitin conjugating enzyme, UBC from d.20.1.1: Ubiquitin conjugating enzyme, UBC appears in SCOP 1.65
Protein Ubiquitin conjugating enzyme, UBC from d.20.1.1: Ubiquitin conjugating enzyme, UBC appears in SCOP 1.69
Protein Ubiquitin conjugating enzyme, UBC from d.20.1.1: Ubiquitin conjugating enzyme, UBC appears in the current release, SCOPe 2.08, called Protein Ubiquitin conjugating enzyme, UBC from d.20.1.1: UBC-related