Lineage for Protein: Ubiquitin conjugating enzyme, UBC

  1. Root: SCOPe 2.07
  2. 2494617Class d: Alpha and beta proteins (a+b) [53931] (388 folds)
  3. 2507728Fold d.20: UBC-like [54494] (1 superfamily)
    alpha-beta(4)-alpha(3); core: meander beta-sheet plus one helix 2
  4. 2507729Superfamily d.20.1: UBC-like [54495] (5 families) (S)
  5. 2507730Family d.20.1.1: UBC-related [54496] (7 protein domains)
  6. 2507738Protein Ubiquitin conjugating enzyme, UBC [54497] (33 species)

Species:

  1. 2507739African clawed frog (Xenopus laevis) [TaxId:8355] [160080] (1 PDB entry)
  2. 2507741Baker's yeast (Saccharomyces cerevisiae) [TaxId:4932] [187672] (2 PDB entries)
    1. Domains for 2eke:
      1. 2507746Domain d2ekea_: 2eke A: [161413]
        Other proteins in same PDB: d2ekec2, d2ekec3, d2eked2, d2eked3
        automated match to d1a3sa_
      2. 2507747Domain d2ekeb_: 2eke B: [161414]
        Other proteins in same PDB: d2ekec2, d2ekec3, d2eked2, d2eked3
        automated match to d1a3sa_
    2. Domains for 2gjd:
      1. 2507742Domain d2gjda_: 2gjd A: [164730]
        automated match to d1a3sa_
      2. 2507743Domain d2gjdb_: 2gjd B: [164731]
        automated match to d1a3sa_
      3. 2507744Domain d2gjdc_: 2gjd C: [164732]
        automated match to d1a3sa_
      4. 2507745Domain d2gjdd_: 2gjd D: [164733]
        automated match to d1a3sa_
  3. 2507748Baker's yeast (Saccharomyces cerevisiae), mms2 [TaxId:4932] [64241] (2 PDB entries)
    1. Domain for 1jat:
    2. Domain for 2gmi:
  4. 2507751Baker's yeast (Saccharomyces cerevisiae), ubc1 [TaxId:4932] [69685] (3 PDB entries)
    Uniprot P21734
    1. Domain for 1fxt:
    2. Domains for 1fzy:
      1. 2507752Domain d1fzya_: 1fzy A: [65072]
      2. 2507753Domain d1fzyb_: 1fzy B: [65073]
    3. Domain for 1tte:
  5. 2507756Baker's yeast (Saccharomyces cerevisiae), ubc13 [TaxId:4932] [64239] (5 PDB entries)
    1. Domain for 1jat:
    2. Domains for 1jbb:
      1. 2507758Domain d1jbba_: 1jbb A: [62842]
      2. 2507759Domain d1jbbb_: 1jbb B: [62843]
    3. Domain for 2gmi:
    4. Domain for 4fh1:
    5. Domain for 5ojw:
  6. 2507763Baker's yeast (Saccharomyces cerevisiae), ubc2 (RAD6) [TaxId:4932] [54499] (1 PDB entry)
  7. 2507767Baker's yeast (Saccharomyces cerevisiae), ubc4 [TaxId:4932] [54500] (1 PDB entry)
  8. 2507769Baker's yeast (Saccharomyces cerevisiae), ubc7 [TaxId:4932] [54501] (1 PDB entry)
  9. 2507771Caenorhabditis elegans, E2 2 [TaxId:6239] [143060] (1 PDB entry)
    Uniprot P35129 1-147
  10. 2507773Clam (Spisula solidissima), E-2C [TaxId:6584] [54504] (2 PDB entries)
    1. Domains for 1e2c:
      1. 2507775Domain d1e2ca_: 1e2c A: [302364]
        automated match to d2e2ca_
      2. 2507776Domain d1e2cb_: 1e2c B: [302365]
        automated match to d2e2ca_
      3. 2507777Domain d1e2cc_: 1e2c C: [302366]
        automated match to d2e2ca_
    2. Domain for 2e2c:
  11. 2507778Human (Homo sapiens), E2 D3 [TaxId:9606] [143054] (3 PDB entries)
    Uniprot P61077 1-147
    1. Domain for 1x23:
    2. Domain for 3ugb:
    3. Domain for 4bvu:
  12. 2507782Human (Homo sapiens), E2 G1 [TaxId:9606] [143056] (1 PDB entry)
    Uniprot P62253 7-131
  13. 2507784Human (Homo sapiens), E2 H [TaxId:9606] [143055] (2 PDB entries)
    Uniprot P62256 4-155
    1. Domains for 1yh6:
      1. 2507785Domain d1yh6a_: 1yh6 A: [303400]
        automated match to d2z5da1
      2. 2507786Domain d1yh6b_: 1yh6 B: [303401]
        automated match to d2z5da1
    2. Domains for 2z5d:
      1. 2507787Domain d2z5da1: 2z5d A:23-174 [171058]
        complexed with na
      2. 2507788Domain d2z5db_: 2z5d B: [171059]
        automated match to d2z5da1
        complexed with na
  14. 2507789Human (Homo sapiens), E2 J2 [TaxId:9606] [143050] (1 PDB entry)
    Uniprot Q5T7L1 12-168
    ubc6 homologue
  15. 2507792Human (Homo sapiens), E2 L6 [TaxId:9606] [143052] (1 PDB entry)
    Uniprot O14933 2-151
  16. 2507794Human (Homo sapiens), E2 M [TaxId:9606] [143058] (3 PDB entries)
    Uniprot P61081 27-183
    the extra N-terminal peptide, bound to the heterodimeric E1 enzyme for NEDD8, can be seen in the PDB entry 1tt5, chains E and F
    1. Domain for 1y8x:
    2. Domain for 2nvu:
    3. Domains for 4p5o:
      1. 2507797Domain d4p5og1: 4p5o G:2-183 [263439]
        Other proteins in same PDB: d4p5oa1, d4p5oa2, d4p5ob_, d4p5oc1, d4p5oc2, d4p5od_, d4p5og2, d4p5og3, d4p5oh_, d4p5oi2, d4p5oi3, d4p5ok_
        automated match to d4p5oi_
        complexed with zn
      2. 2507798Domain d4p5oi1: 4p5o I:2-183 [258095]
        Other proteins in same PDB: d4p5oa1, d4p5oa2, d4p5ob_, d4p5oc1, d4p5oc2, d4p5od_, d4p5og2, d4p5og3, d4p5oh_, d4p5oi2, d4p5oi3, d4p5ok_
        automated match to d2nvuc1
        complexed with zn
  17. 2507799Human (Homo sapiens), E2 S [TaxId:9606] [143048] (1 PDB entry)
    Uniprot Q16763 6-156
  18. 2507801Human (Homo sapiens), E2 T [TaxId:9606] [143057] (1 PDB entry)
    Uniprot Q9NPD8 1-154
    Hspc150
  19. 2507803Human (Homo sapiens), E2 U [TaxId:9606] [143053] (1 PDB entry)
    Uniprot Q5VVX9 1-148
  20. 2507805Human (Homo sapiens), E2 variant 1 [TaxId:9606] [143051] (6 PDB entries)
    Uniprot Q13404 80-221! Uniprot Q13404 82-220
    1. Domain for 2a4d:
    2. Domain for 2c2v:
    3. Domain for 4nrg:
    4. Domain for 4onl:
    5. Domain for 4onm:
    6. Domain for 4onn:
  21. 2507812Human (Homo sapiens), mms2 [TaxId:9606] [64242] (6 PDB entries)
    1. Domain for 1j74:
    2. Domain for 1j7d:
    3. Domain for 1zgu:
    4. Domains for 3von:
      1. 2507817Domain d3vonb_: 3von B: [250626]
        Other proteins in same PDB: d3vona_, d3vonc_, d3vone_, d3vong_, d3vonh_, d3vonj_, d3vonl_, d3vonn_, d3vono_, d3vonq_, d3vons_, d3vonu_, d3vonv_, d3vonx_, d3vonz_
        automated match to d1j7da_
      2. 2507818Domain d3vond_: 3von D: [250628]
        Other proteins in same PDB: d3vona_, d3vonc_, d3vone_, d3vong_, d3vonh_, d3vonj_, d3vonl_, d3vonn_, d3vono_, d3vonq_, d3vons_, d3vonu_, d3vonv_, d3vonx_, d3vonz_
        automated match to d1j7da_
      3. 2507819Domain d3vonf_: 3von F: [250630]
        Other proteins in same PDB: d3vona_, d3vonc_, d3vone_, d3vong_, d3vonh_, d3vonj_, d3vonl_, d3vonn_, d3vono_, d3vonq_, d3vons_, d3vonu_, d3vonv_, d3vonx_, d3vonz_
        automated match to d1j7da_
      4. 2507820Domain d3voni_: 3von I: [250633]
        Other proteins in same PDB: d3vona_, d3vonc_, d3vone_, d3vong_, d3vonh_, d3vonj_, d3vonl_, d3vonn_, d3vono_, d3vonq_, d3vons_, d3vonu_, d3vonv_, d3vonx_, d3vonz_
        automated match to d1j7da_
      5. 2507821Domain d3vonk_: 3von K: [250635]
        Other proteins in same PDB: d3vona_, d3vonc_, d3vone_, d3vong_, d3vonh_, d3vonj_, d3vonl_, d3vonn_, d3vono_, d3vonq_, d3vons_, d3vonu_, d3vonv_, d3vonx_, d3vonz_
        automated match to d1j7da_
      6. 2507822Domain d3vonm_: 3von M: [250637]
        Other proteins in same PDB: d3vona_, d3vonc_, d3vone_, d3vong_, d3vonh_, d3vonj_, d3vonl_, d3vonn_, d3vono_, d3vonq_, d3vons_, d3vonu_, d3vonv_, d3vonx_, d3vonz_
        automated match to d1j7da_
      7. 2507823Domain d3vonp_: 3von P: [250640]
        Other proteins in same PDB: d3vona_, d3vonc_, d3vone_, d3vong_, d3vonh_, d3vonj_, d3vonl_, d3vonn_, d3vono_, d3vonq_, d3vons_, d3vonu_, d3vonv_, d3vonx_, d3vonz_
        automated match to d1j7da_
      8. 2507824Domain d3vonr_: 3von R: [250642]
        Other proteins in same PDB: d3vona_, d3vonc_, d3vone_, d3vong_, d3vonh_, d3vonj_, d3vonl_, d3vonn_, d3vono_, d3vonq_, d3vons_, d3vonu_, d3vonv_, d3vonx_, d3vonz_
        automated match to d1j7da_
      9. 2507825Domain d3vont_: 3von T: [250644]
        Other proteins in same PDB: d3vona_, d3vonc_, d3vone_, d3vong_, d3vonh_, d3vonj_, d3vonl_, d3vonn_, d3vono_, d3vonq_, d3vons_, d3vonu_, d3vonv_, d3vonx_, d3vonz_
        automated match to d1j7da_
      10. 2507826Domain d3vonw_: 3von W: [250647]
        Other proteins in same PDB: d3vona_, d3vonc_, d3vone_, d3vong_, d3vonh_, d3vonj_, d3vonl_, d3vonn_, d3vono_, d3vonq_, d3vons_, d3vonu_, d3vonv_, d3vonx_, d3vonz_
        automated match to d1j7da_
      11. 2507827Domain d3vony_: 3von Y: [250649]
        Other proteins in same PDB: d3vona_, d3vonc_, d3vone_, d3vong_, d3vonh_, d3vonj_, d3vonl_, d3vonn_, d3vono_, d3vonq_, d3vons_, d3vonu_, d3vonv_, d3vonx_, d3vonz_
        automated match to d1j7da_
    5. Domain for 4nr3:
    6. Domain for 4nri:
  22. 2507829Human (Homo sapiens), ubc13 [TaxId:9606] [64240] (8 PDB entries)
    1. Domain for 1j7d:
    2. Domain for 3w31:
    3. Domain for 4dhi:
    4. Domains for 4dhj:
      1. 2507833Domain d4dhjc_: 4dhj C: [201702]
        Other proteins in same PDB: d4dhja_, d4dhjb_, d4dhjd_, d4dhje_, d4dhjf_, d4dhjh_, d4dhji_, d4dhjj_, d4dhjl_, d4dhjm_
        automated match to d1j7db_
      2. 2507834Domain d4dhjg_: 4dhj G: [201705]
        Other proteins in same PDB: d4dhja_, d4dhjb_, d4dhjd_, d4dhje_, d4dhjf_, d4dhjh_, d4dhji_, d4dhjj_, d4dhjl_, d4dhjm_
        automated match to d1j7db_
      3. 2507835Domain d4dhjk_: 4dhj K: [196008]
        Other proteins in same PDB: d4dhja_, d4dhjb_, d4dhjd_, d4dhje_, d4dhjf_, d4dhjh_, d4dhji_, d4dhjj_, d4dhjl_, d4dhjm_
        automated match to d2c2vb_
      4. 2507836Domain d4dhjn_: 4dhj N: [201709]
        Other proteins in same PDB: d4dhja_, d4dhjb_, d4dhjd_, d4dhje_, d4dhjf_, d4dhjh_, d4dhji_, d4dhjj_, d4dhjl_, d4dhjm_
        automated match to d1j7db_
    5. Domain for 4dhz:
    6. Domain for 4tkp:
    7. Domains for 5eya:
      1. 2507837Domain d5eyaa_: 5eya A: [321262]
        Other proteins in same PDB: d5eyac_, d5eyad_
        automated match to d3w31b_
        complexed with zn
      2. 2507838Domain d5eyab_: 5eya B: [321269]
        Other proteins in same PDB: d5eyac_, d5eyad_
        automated match to d3w31b_
        complexed with zn
    8. Domain for 5ywr:
  23. 2507841Human (Homo sapiens), ubc2b [TaxId:9606] [102840] (4 PDB entries)
    E2-17 kDa
    1. Domain for 1jas:
    2. Domain for 2y4w:
    3. Domain for 2yb6:
    4. Domain for 2ybf:
  24. 2507846Human (Homo sapiens), ubc9 [TaxId:9606] [54503] (29 PDB entries)
    identical sequence in many other species
    1. Domain for 1a3s:
    2. Domains for 1kps:
      1. 2507875Domain d1kpsa1: 1kps A:1-158 [68786]
        Other proteins in same PDB: d1kpsa2, d1kpsb_, d1kpsd_
        complexed with so4
      2. 2507876Domain d1kpsc_: 1kps C: [68788]
        Other proteins in same PDB: d1kpsa2, d1kpsb_, d1kpsd_
        complexed with so4
    3. Domain for 1u9a:
    4. Domain for 1u9b:
    5. Domain for 1z5s:
    6. Domain for 2grn:
    7. Domain for 2gro:
    8. Domain for 2grp:
    9. Domain for 2grq:
    10. Domain for 2grr:
    11. Domains for 2o25:
      1. 2507864Domain d2o25c_: 2o25 C: [138890]
        Other proteins in same PDB: d2o25a1, d2o25a2, d2o25b1, d2o25b2
        automated match to d1kpsa_
      2. 2507865Domain d2o25d_: 2o25 D: [138891]
        Other proteins in same PDB: d2o25a1, d2o25a2, d2o25b1, d2o25b2
        automated match to d1kpsa_
    12. Domain for 2pe6:
    13. Domain for 2px9:
    14. Domain for 2uyz:
    15. Domain for 2vrr:
    16. Domain for 2xwu:
    17. Domains for 3a4s:
      1. 2507868Domain d3a4sa_: 3a4s A: [171724]
        Other proteins in same PDB: d3a4sb2, d3a4sc_, d3a4sd_
        automated match to d1kpsa_
        protein/RNA complex
      2. 2507869Domain d3a4sb1: 3a4s B:1-158 [171725]
        Other proteins in same PDB: d3a4sb2, d3a4sc_, d3a4sd_
        automated match to d1kpsa_
        protein/RNA complex
    18. Domain for 3uin:
    19. Domain for 3uio:
    20. Domain for 3uip:
    21. Domains for 4y1l:
      1. 2507877Domain d4y1la_: 4y1l A: [272444]
        Other proteins in same PDB: d4y1lc1, d4y1lc2
        automated match to d1kpsa_
      2. 2507878Domain d4y1lb_: 4y1l B: [272443]
        Other proteins in same PDB: d4y1lc1, d4y1lc2
        automated match to d1kpsa_
    22. Domains for 5d2m:
      1. 2507871Domain d5d2ma_: 5d2m A: [278940]
        Other proteins in same PDB: d5d2mb_, d5d2mc_, d5d2me1, d5d2me2, d5d2mf_
        automated match to d2pe6a_
        complexed with edo
      2. 2507872Domain d5d2md_: 5d2m D: [278942]
        Other proteins in same PDB: d5d2mb_, d5d2mc_, d5d2me1, d5d2me2, d5d2mf_
        automated match to d2pe6a_
        complexed with edo
    23. Domain for 5f6d:
    24. Domain for 5f6e:
    25. Domain for 5f6u:
    26. Domain for 5f6v:
    27. Domain for 5f6w:
    28. Domain for 5f6x:
    29. Domain for 5f6y:
  25. 2507881Human (Homo sapiens), ubch10 [TaxId:9606] [64243] (1 PDB entry)
  26. 2507884Human (Homo sapiens), ubch5b [TaxId:9606] [102841] (23 PDB entries)
    Uniprot P62837
    E2-17 kDa 2
    1. Domain for 1ur6:
    2. Domain for 1w4u:
    3. Domain for 2esk:
    4. Domain for 2eso:
    5. Domain for 2esp:
    6. Domain for 2esq:
    7. Domains for 3jw0:
      1. 2507910Domain d3jw0a_: 3jw0 A: [247064]
        Other proteins in same PDB: d3jw0c1, d3jw0c2, d3jw0d_, d3jw0x_, d3jw0y_
        automated match to d3a33a_
      2. 2507911Domain d3jw0b_: 3jw0 B: [247065]
        Other proteins in same PDB: d3jw0c1, d3jw0c2, d3jw0d_, d3jw0x_, d3jw0y_
        automated match to d3a33a_
    8. Domain for 3l1y:
    9. Domain for 4a49:
    10. Domain for 4a4b:
    11. Domain for 4a4c:
    12. Domain for 4ldt:
    13. Domain for 4wz3:
    14. Domains for 5d0k:
      1. 2507906Domain d5d0ka1: 5d0k A:1-147 [279796]
        Other proteins in same PDB: d5d0ka2, d5d0kb_, d5d0kd2, d5d0ke_, d5d0kg2, d5d0kh_, d5d0kj2, d5d0kk_
        automated match to d3tgda_
        complexed with zn
      2. 2507907Domain d5d0kd1: 5d0k D:1-147 [279801]
        Other proteins in same PDB: d5d0ka2, d5d0kb_, d5d0kd2, d5d0ke_, d5d0kg2, d5d0kh_, d5d0kj2, d5d0kk_
        automated match to d3tgda_
        complexed with zn
      3. 2507908Domain d5d0kg1: 5d0k G:1-147 [279798]
        Other proteins in same PDB: d5d0ka2, d5d0kb_, d5d0kd2, d5d0ke_, d5d0kg2, d5d0kh_, d5d0kj2, d5d0kk_
        automated match to d3tgda_
        complexed with zn
      4. 2507909Domain d5d0kj1: 5d0k J:1-147 [279803]
        Other proteins in same PDB: d5d0ka2, d5d0kb_, d5d0kd2, d5d0ke_, d5d0kg2, d5d0kh_, d5d0kj2, d5d0kk_
        automated match to d3tgda_
        complexed with zn
    15. Domain for 5d0m:
    16. Domain for 5d1k:
    17. Domain for 5d1l:
    18. Domain for 5d1m:
    19. Domains for 5mnj:
      1. 2507901Domain d5mnja_: 5mnj A: [334869]
        Other proteins in same PDB: d5mnjb_, d5mnjf_
        automated match to d2clwa_
        complexed with so4, zn
      2. 2507902Domain d5mnje_: 5mnj E: [334870]
        Other proteins in same PDB: d5mnjb_, d5mnjf_
        automated match to d2clwa_
        complexed with so4, zn
    20. Domains for 5ulf:
      1. 2507894Domain d5ulfa1: 5ulf A:1-147 [335198]
        Other proteins in same PDB: d5ulfa2, d5ulfb_, d5ulfc2, d5ulfd_
        automated match to d2clwa_
        complexed with gol
      2. 2507895Domain d5ulfc1: 5ulf C:1-147 [335216]
        Other proteins in same PDB: d5ulfa2, d5ulfb_, d5ulfc2, d5ulfd_
        automated match to d2clwa_
        complexed with gol
    21. Domain for 5ulh:
    22. Domain for 5ulk:
    23. Domains for 5vzw:
      1. 2507903Domain d5vzwa_: 5vzw A: [337734]
        Other proteins in same PDB: d5vzwc1, d5vzwc2, d5vzwd1, d5vzwd2
        automated match to d2clwa_
        complexed with zn
      2. 2507904Domain d5vzwb_: 5vzw B: [337599]
        Other proteins in same PDB: d5vzwc1, d5vzwc2, d5vzwd1, d5vzwd2
        automated match to d2clwa_
        complexed with zn
  27. 2507915Human (Homo sapiens), ubch7 [TaxId:9606] [54502] (2 PDB entries)
    1. Domain for 1c4z:
    2. Domain for 1fbv:
  28. 2507918Human (Homo sapiens), ubch8 [TaxId:9606] [117850] (1 PDB entry)
    Uniprot Q96LR5 54-201
  29. 2507922Leishmania major [TaxId:5664] [143049] (1 PDB entry)
    Uniprot Q4Q5L3 9-166
    Ubiquitin carrier protein 4, putative
  30. 2507924Nematode (Caenorhabditis elegans), E2-19 kDa [TaxId:6239] [89862] (1 PDB entry)
  31. 2507926Nematode (Caenorhabditis elegans), E2-21.5 kDa [TaxId:6239] [102842] (1 PDB entry)
  32. 2507930Thale cress (Arabidopsis thaliana) [TaxId:3702] [54498] (1 PDB entry)
  33. 2507932Toxoplasma gondii [TaxId:5811] [143059] (1 PDB entry)

More info for Protein Ubiquitin conjugating enzyme, UBC from d.20.1.1: UBC-related

Timeline for Protein Ubiquitin conjugating enzyme, UBC from d.20.1.1: UBC-related: