Lineage for Family d.20.1.1: UBC-related

  1. Root: SCOP 1.73
  2. 713694Class d: Alpha and beta proteins (a+b) [53931] (334 folds)
  3. 720005Fold d.20: UBC-like [54494] (1 superfamily)
    alpha-beta(4)-alpha(3); core: meander beta-sheet plus one helix 2
  4. 720006Superfamily d.20.1: UBC-like [54495] (4 families) (S)
  5. 720007Family d.20.1.1: UBC-related [54496] (6 proteins)

Proteins:

  1. 720008Hypothetical protein Tgtwinscan_2721, E2 domain [143066] (1 species)
  2. 720012Putative ubiquitin-conjugating enzyme, E2 domain [143070] (1 species)
  3. 720015Ubiquitin conjugating enzyme, UBC [54497] (31 species)
    1. 720016Species Arabidopsis thaliana [TaxId:3702] [54498] (1 PDB entry)
    2. 720018Species Baker's yeast (Saccharomyces cerevisiae), mms2 [TaxId:4932] [64241] (2 PDB entries)
    3. 720021Species Baker's yeast (Saccharomyces cerevisiae), ubc1 [TaxId:4932] [69685] (3 PDB entries)
    4. 720026Species Baker's yeast (Saccharomyces cerevisiae), ubc13 [TaxId:4932] [64239] (2 PDB entries)
    5. 720030Species Baker's yeast (Saccharomyces cerevisiae), ubc2 (RAD6) [TaxId:4932] [54499] (1 PDB entry)
    6. 720034Species Baker's yeast (Saccharomyces cerevisiae), ubc4 [TaxId:4932] [54500] (1 PDB entry)
    7. 720036Species Baker's yeast (Saccharomyces cerevisiae), ubc7 [TaxId:4932] [54501] (1 PDB entry)
    8. 720038Species Caenorhabditis elegans, E2 2 [TaxId:6239] [143060] (1 PDB entry)
    9. 720040Species Clam (Spisula solidissima), E-2C [TaxId:6584] [54504] (1 PDB entry)
    10. 720042Species Human (Homo sapiens), E2 D3 [TaxId:9606] [143054] (2 PDB entries)
    11. 720048Species Human (Homo sapiens), E2 G1 [TaxId:9606] [143056] (1 PDB entry)
    12. 720050Species Human (Homo sapiens), E2 H [TaxId:9606] [143055] (1 PDB entry)
    13. 720053Species Human (Homo sapiens), E2 J2 [TaxId:9606] [143050] (1 PDB entry)
      ubc6 homologue
    14. 720056Species Human (Homo sapiens), E2 L6 [TaxId:9606] [143052] (2 PDB entries)
    15. 720060Species Human (Homo sapiens), E2 M [TaxId:9606] [143058] (1 PDB entry)
      the extra N-terminal peptide, bound to the heterodimeric E1 enzyme for NEDD8, can be seen in the PDB entry 1tt5, chains E and F
    16. 720062Species Human (Homo sapiens), E2 T [TaxId:9606] [143057] (1 PDB entry)
      Hspc150
    17. 720064Species Human (Homo sapiens), E2 U [TaxId:9606] [143053] (1 PDB entry)
    18. 720066Species Human (Homo sapiens), E2 variant 1 [TaxId:9606] [143051] (2 PDB entries)
    19. 720072Species Human (Homo sapiens), mms2 [TaxId:9606] [64242] (3 PDB entries)
    20. 720076Species Human (Homo sapiens), ubc13 [TaxId:9606] [64240] (2 PDB entries)
    21. 720082Species Human (Homo sapiens), ubc2b [TaxId:9606] [102840] (1 PDB entry)
      E2-17 kDa
    22. 720084Species Human (Homo sapiens), ubc9 [TaxId:9606] [54503] (8 PDB entries)
      identical sequence in many other species
    23. 720095Species Human (Homo sapiens), ubch10 [TaxId:9606] [64243] (1 PDB entry)
    24. 720098Species Human (Homo sapiens), ubch5b [TaxId:9606] [102841] (8 PDB entries)
      E2-17 kDa 2
    25. 720113Species Human (Homo sapiens), ubch7 [TaxId:9606] [54502] (2 PDB entries)
    26. 720116Species Human (Homo sapiens), ubch8 [TaxId:9606] [117850] (1 PDB entry)
    27. 720120Species Human(Homo sapiens), E2 S [TaxId:9606] [143048] (1 PDB entry)
    28. 720123Species Leishmania major [TaxId:5664] [143049] (1 PDB entry)
      Ubiquitin carrier protein 4, putative
    29. 720127Species Nematode (Caenorhabditis elegans), E2-19 kDa [TaxId:6239] [89862] (1 PDB entry)
    30. 720129Species Nematode (Caenorhabditis elegans), E2-21.5 kDa [TaxId:6239] [102842] (2 PDB entries)
    31. 720134Species Toxoplasma gondii [TaxId:5811] [143059] (1 PDB entry)
  4. 720136Ubiquitin-conjugating enzyme E2 Q2, C-terminal domain [143068] (1 species)
    this proteins contains the N-terminal RWD domain
  5. 720139Ubiquitin-conjugating enzyme E2-25 kDa, E2 domain [143063] (2 species)
    ubc1 homologue; also contains the C-terminal UBA domain
    1. 720140Species Cow (Bos taurus) [TaxId:9913] [143065] (2 PDB entries)
    2. 720143Species Human (Homo sapiens) [TaxId:9606] [143064] (2 PDB entries)
  6. 720148Ubiquitin-protein ligase W (E2 W) [143061] (1 species)
    forms segment-swapped dimer

More info for Family d.20.1.1: UBC-related

Timeline for Family d.20.1.1: UBC-related: