Lineage for Species: Human (Homo sapiens) [TaxId: 9606]

  1. Root: SCOPe 2.06
  2. 2152203Class d: Alpha and beta proteins (a+b) [53931] (385 folds)
  3. 2158219Fold d.15: beta-Grasp (ubiquitin-like) [54235] (14 superfamilies)
    core: beta(2)-alpha-beta(2); mixed beta-sheet 2143
  4. 2158220Superfamily d.15.1: Ubiquitin-like [54236] (11 families) (S)
  5. 2158221Family d.15.1.1: Ubiquitin-related [54237] (39 protein domains)
    Pfam PF00240
  6. 2158362Protein Nedd8 [54244] (1 species)
  7. 2158363Species Human (Homo sapiens) [TaxId:9606] [54245] (16 PDB entries)
    Uniprot Q15843

PDB entries in Species: Human (Homo sapiens) [TaxId: 9606]:

  1. Domain(s) for 1ndd:
    1. 2158365Domain d1ndda_: 1ndd A: [37599]
      complexed with cl, so4
    2. 2158366Domain d1nddb_: 1ndd B: [37600]
      complexed with cl, so4
    3. 2158367Domain d1nddc_: 1ndd C: [37601]
      complexed with cl, so4
    4. 2158368Domain d1nddd_: 1ndd D: [37602]
      complexed with cl, so4
  2. Domain(s) for 1r4m:
    1. 2158385Domain d1r4mi_: 1r4m I: [97007]
      Other proteins in same PDB: d1r4ma_, d1r4mb_, d1r4mc_, d1r4md_, d1r4me_, d1r4mf_, d1r4mg_, d1r4mh_
      complexed with APPBP1 and UBA3
      complexed with zn
    2. 2158386Domain d1r4mj_: 1r4m J: [97008]
      Other proteins in same PDB: d1r4ma_, d1r4mb_, d1r4mc_, d1r4md_, d1r4me_, d1r4mf_, d1r4mg_, d1r4mh_
      complexed with APPBP1 and UBA3
      complexed with zn
    3. 2158387Domain d1r4mk_: 1r4m K: [97009]
      Other proteins in same PDB: d1r4ma_, d1r4mb_, d1r4mc_, d1r4md_, d1r4me_, d1r4mf_, d1r4mg_, d1r4mh_
      complexed with APPBP1 and UBA3
      complexed with zn
    4. 2158388Domain d1r4ml_: 1r4m L: [97010]
      Other proteins in same PDB: d1r4ma_, d1r4mb_, d1r4mc_, d1r4md_, d1r4me_, d1r4mf_, d1r4mg_, d1r4mh_
      complexed with APPBP1 and UBA3
      complexed with zn
  3. Domain(s) for 1r4n:
    1. 2158397Domain d1r4ni_: 1r4n I: [97019]
      Other proteins in same PDB: d1r4na_, d1r4nb_, d1r4nc_, d1r4nd_, d1r4ne_, d1r4nf_, d1r4ng_, d1r4nh_
      complexed with APPBP1 and UBA3
      complexed with atp, zn
    2. 2158398Domain d1r4nj_: 1r4n J: [97020]
      Other proteins in same PDB: d1r4na_, d1r4nb_, d1r4nc_, d1r4nd_, d1r4ne_, d1r4nf_, d1r4ng_, d1r4nh_
      complexed with APPBP1 and UBA3
      complexed with atp, zn
    3. 2158399Domain d1r4nk_: 1r4n K: [97021]
      Other proteins in same PDB: d1r4na_, d1r4nb_, d1r4nc_, d1r4nd_, d1r4ne_, d1r4nf_, d1r4ng_, d1r4nh_
      complexed with APPBP1 and UBA3
      complexed with atp, zn
    4. 2158400Domain d1r4nl_: 1r4n L: [97022]
      Other proteins in same PDB: d1r4na_, d1r4nb_, d1r4nc_, d1r4nd_, d1r4ne_, d1r4nf_, d1r4ng_, d1r4nh_
      complexed with APPBP1 and UBA3
      complexed with atp, zn
  4. Domain(s) for 1xt9:
  5. Domain(s) for 2ko3:
  6. Domain(s) for 2n7k:
  7. Domain(s) for 2nvu:
    1. 2158381Domain d2nvui_: 2nvu I: [138663]
      Other proteins in same PDB: d2nvua_, d2nvub1, d2nvub2, d2nvuc1
      automated match to d1nddb_
      complexed with atp, mg, zn
    2. 2158382Domain d2nvuj_: 2nvu J: [138664]
      Other proteins in same PDB: d2nvua_, d2nvub1, d2nvub2, d2nvuc1
      automated match to d1nddb_
      complexed with atp, mg, zn
  8. Domain(s) for 3dbh:
    1. 2158373Domain d3dbhi2: 3dbh I:101-176 [157472]
      Other proteins in same PDB: d3dbha_, d3dbhb1, d3dbhb2, d3dbhc_, d3dbhd1, d3dbhd2, d3dbhe_, d3dbhf1, d3dbhf2, d3dbhg_, d3dbhh1, d3dbhh2, d3dbhi3
      automated match to d1nddb_
      complexed with zn
    2. 2158374Domain d3dbhj_: 3dbh J: [161644]
      Other proteins in same PDB: d3dbha_, d3dbhb1, d3dbhb2, d3dbhc_, d3dbhd1, d3dbhd2, d3dbhe_, d3dbhf1, d3dbhf2, d3dbhg_, d3dbhh1, d3dbhh2, d3dbhi3
      automated match to d1nddb_
      complexed with zn
    3. 2158375Domain d3dbhk_: 3dbh K: [161645]
      Other proteins in same PDB: d3dbha_, d3dbhb1, d3dbhb2, d3dbhc_, d3dbhd1, d3dbhd2, d3dbhe_, d3dbhf1, d3dbhf2, d3dbhg_, d3dbhh1, d3dbhh2, d3dbhi3
      automated match to d1nddb_
      complexed with zn
    4. 2158376Domain d3dbhl_: 3dbh L: [161646]
      Other proteins in same PDB: d3dbha_, d3dbhb1, d3dbhb2, d3dbhc_, d3dbhd1, d3dbhd2, d3dbhe_, d3dbhf1, d3dbhf2, d3dbhg_, d3dbhh1, d3dbhh2, d3dbhi3
      automated match to d1nddb_
      complexed with zn
  9. Domain(s) for 3dbl:
    1. 2158377Domain d3dbli2: 3dbl I:101-176 [157481]
      Other proteins in same PDB: d3dbla_, d3dblb2, d3dblb3, d3dblc_, d3dbld2, d3dbld3, d3dble_, d3dblf2, d3dblf3, d3dblg_, d3dblh2, d3dblh3, d3dbli3
      automated match to d1nddb_
      complexed with zn
    2. 2158378Domain d3dblj_: 3dbl J: [161647]
      Other proteins in same PDB: d3dbla_, d3dblb2, d3dblb3, d3dblc_, d3dbld2, d3dbld3, d3dble_, d3dblf2, d3dblf3, d3dblg_, d3dblh2, d3dblh3, d3dbli3
      automated match to d1nddb_
      complexed with zn
    3. 2158379Domain d3dblk_: 3dbl K: [161648]
      Other proteins in same PDB: d3dbla_, d3dblb2, d3dblb3, d3dblc_, d3dbld2, d3dbld3, d3dble_, d3dblf2, d3dblf3, d3dblg_, d3dblh2, d3dblh3, d3dbli3
      automated match to d1nddb_
      complexed with zn
    4. 2158380Domain d3dbll_: 3dbl L: [161649]
      Other proteins in same PDB: d3dbla_, d3dblb2, d3dblb3, d3dblc_, d3dbld2, d3dbld3, d3dble_, d3dblf2, d3dblf3, d3dblg_, d3dblh2, d3dblh3, d3dbli3
      automated match to d1nddb_
      complexed with zn
  10. Domain(s) for 3dbr:
    1. 2158389Domain d3dbri1: 3dbr I:99-176 [239206]
      Other proteins in same PDB: d3dbra_, d3dbrb1, d3dbrb2, d3dbrc_, d3dbrd1, d3dbrd2, d3dbre_, d3dbrf1, d3dbrf2, d3dbrg_, d3dbrh1, d3dbrh2, d3dbri2, d3dbrj2, d3dbrk2, d3dbrl2
      automated match to d3dbhj_
      complexed with zn
    2. 2158390Domain d3dbrj1: 3dbr J:101-176 [239207]
      Other proteins in same PDB: d3dbra_, d3dbrb1, d3dbrb2, d3dbrc_, d3dbrd1, d3dbrd2, d3dbre_, d3dbrf1, d3dbrf2, d3dbrg_, d3dbrh1, d3dbrh2, d3dbri2, d3dbrj2, d3dbrk2, d3dbrl2
      automated match to d3dbhj_
      complexed with zn
    3. 2158391Domain d3dbrk1: 3dbr K:101-176 [239208]
      Other proteins in same PDB: d3dbra_, d3dbrb1, d3dbrb2, d3dbrc_, d3dbrd1, d3dbrd2, d3dbre_, d3dbrf1, d3dbrf2, d3dbrg_, d3dbrh1, d3dbrh2, d3dbri2, d3dbrj2, d3dbrk2, d3dbrl2
      automated match to d3dbhj_
      complexed with zn
    4. 2158392Domain d3dbrl1: 3dbr L:101-176 [239209]
      Other proteins in same PDB: d3dbra_, d3dbrb1, d3dbrb2, d3dbrc_, d3dbrd1, d3dbrd2, d3dbre_, d3dbrf1, d3dbrf2, d3dbrg_, d3dbrh1, d3dbrh2, d3dbri2, d3dbrj2, d3dbrk2, d3dbrl2
      automated match to d3dbhj_
      complexed with zn
  11. Domain(s) for 3dqv:
    1. 2158393Domain d3dqva2: 3dqv A:101-176 [157827]
      Other proteins in same PDB: d3dqva3, d3dqvb2, d3dqvr_, d3dqvy_
      automated match to d3dbhi_
      complexed with zn
    2. 2158394Domain d3dqvb1: 3dqv B:101-176 [239217]
      Other proteins in same PDB: d3dqva3, d3dqvb2, d3dqvr_, d3dqvy_
      automated match to d3dbhi_
      complexed with zn
  12. Domain(s) for 3gzn:
    1. 2158383Domain d3gzni1: 3gzn I:1-76 [246400]
      Other proteins in same PDB: d3gzna_, d3gznb_, d3gznc_, d3gznd_, d3gzni2, d3gznj2
      automated match to d2bkrb_
      complexed with b39, zn
    2. 2158384Domain d3gznj1: 3gzn J:1-76 [246401]
      Other proteins in same PDB: d3gzna_, d3gznb_, d3gznc_, d3gznd_, d3gzni2, d3gznj2
      automated match to d2bkrb_
      complexed with b39, zn
  13. Domain(s) for 4f8c:
    1. 2158369Domain d4f8cb_: 4f8c B: [221082]
      automated match to d2gbrc_
      complexed with edo
    2. 2158370Domain d4f8cd_: 4f8c D: [221083]
      automated match to d2gbrc_
      complexed with edo
  14. Domain(s) for 4fbj:
  15. Domain(s) for 4hcp:
  16. Domain(s) for 4p5o:
    1. 2158395Domain d4p5oh_: 4p5o H: [258096]
      Other proteins in same PDB: d4p5oa1, d4p5oa2, d4p5ob_, d4p5oc1, d4p5oc2, d4p5od_, d4p5og1, d4p5og2, d4p5og3, d4p5oi1, d4p5oi2, d4p5oi3
      automated match to d3dbhi_
      complexed with zn
    2. 2158396Domain d4p5ok_: 4p5o K: [263440]
      Other proteins in same PDB: d4p5oa1, d4p5oa2, d4p5ob_, d4p5oc1, d4p5oc2, d4p5od_, d4p5og1, d4p5og2, d4p5og3, d4p5oi1, d4p5oi2, d4p5oi3
      automated match to d3dbhi_
      complexed with zn

More info for Species Human (Homo sapiens) [TaxId:9606] from d.15.1.1 Nedd8

Timeline for Species Human (Homo sapiens) [TaxId:9606] from d.15.1.1 Nedd8: