Lineage for Protein: Ubiquitin

  1. Root: SCOPe 2.04
  2. 1631855Class d: Alpha and beta proteins (a+b) [53931] (380 folds)
  3. 1637451Fold d.15: beta-Grasp (ubiquitin-like) [54235] (14 superfamilies)
    core: beta(2)-alpha-beta(2); mixed beta-sheet 2143
  4. 1637452Superfamily d.15.1: Ubiquitin-like [54236] (9 families) (S)
  5. 1637453Family d.15.1.1: Ubiquitin-related [54237] (39 proteins)
    Pfam PF00240
  6. 1637639Protein Ubiquitin [54238] (7 species)

Species:

  1. 1637640African clawed frog (Xenopus laevis) [TaxId:8355] [224918] (1 PDB entry)
  2. 1637642Baker's yeast (Saccharomyces cerevisiae), smt3 [TaxId:4932] [89830] (9 PDB entries)
    1. Domain for 1otr:
    2. Domain for 1q0w:
    3. Domain for 1wr1:
    4. Domain for 1zw7:
    5. Domain for 2g3q:
    6. Domain for 2jt4:
    7. Domain for 2jwz:
    8. Domain for 2l00:
    9. Domains for 3cmm:
      1. 1637643Domain d3cmmb_: 3cmm B: [156833]
        automated match to d1otrb_
        protein/DNA complex; complexed with pro
      2. 1637644Domain d3cmmd_: 3cmm D: [156834]
        automated match to d1otrb_
        protein/DNA complex; complexed with pro
  3. Cow (Bos taurus) [TaxId:9913] [224919] (24 PDB entries)
    1. Domains for 1aar:
      1. 1637684Domain d1aara_: 1aar A: [37586]
        di-ubiquitin
      2. 1637685Domain d1aarb_: 1aar B: [37587]
        di-ubiquitin
    2. Domains for 1p3q:
      1. 1637704Domain d1p3qu_: 1p3q U: [87750]
        Other proteins in same PDB: d1p3qq_, d1p3qr_
        annotated as bovine in PDB, identical to human sequence
      2. 1637705Domain d1p3qv_: 1p3q V: [87751]
        Other proteins in same PDB: d1p3qq_, d1p3qr_
        annotated as bovine in PDB, identical to human sequence
    3. Domain for 1uzx:
      • 1637676Domain d1uzxb_: 1uzx B: [100239]
        Other proteins in same PDB: d1uzxa_
        annotated as bovine in PDB, identical to human sequence
        complexed with mes, so4
    4. Domains for 1wr6:
      1. 1637693Domain d1wr6e_: 1wr6 E: [121186]
        Other proteins in same PDB: d1wr6a1, d1wr6b_, d1wr6c_, d1wr6d_
        automated match to d1aara_
      2. 1637694Domain d1wr6f_: 1wr6 F: [121187]
        Other proteins in same PDB: d1wr6a1, d1wr6b_, d1wr6c_, d1wr6d_
        automated match to d1aara_
      3. 1637695Domain d1wr6g_: 1wr6 G: [121188]
        Other proteins in same PDB: d1wr6a1, d1wr6b_, d1wr6c_, d1wr6d_
        automated match to d1aara_
      4. 1637696Domain d1wr6h_: 1wr6 H: [121189]
        Other proteins in same PDB: d1wr6a1, d1wr6b_, d1wr6c_, d1wr6d_
        automated match to d1aara_
    5. Domain for 1wrd:
    6. Domains for 1yd8:
      1. 1637698Domain d1yd8u_: 1yd8 U: [122974]
        Other proteins in same PDB: d1yd8g1, d1yd8h_
        automated match to d1aara_
      2. 1637699Domain d1yd8v_: 1yd8 V: [122975]
        Other proteins in same PDB: d1yd8g1, d1yd8h_
        automated match to d1aara_
    7. Domain for 2c7m:
    8. Domains for 2c7n:
      1. 1637677Domain d2c7nb1: 2c7n B:1-74 [130070]
        Other proteins in same PDB: d2c7na1, d2c7nc1, d2c7ng1, d2c7ni1
        automatically matched to d1aara_
        complexed with zn
      2. 1637678Domain d2c7nd1: 2c7n D:1-74 [130072]
        Other proteins in same PDB: d2c7na1, d2c7nc1, d2c7ng1, d2c7ni1
        automatically matched to d1aara_
        complexed with zn
      3. 1637679Domain d2c7nf1: 2c7n F:1-74 [130073]
        Other proteins in same PDB: d2c7na1, d2c7nc1, d2c7ng1, d2c7ni1
        automatically matched to d1aara_
        complexed with zn
      4. 1637680Domain d2c7nh1: 2c7n H:1-73 [130075]
        Other proteins in same PDB: d2c7na1, d2c7nc1, d2c7ng1, d2c7ni1
        automatically matched to d1aara_
        complexed with zn
      5. 1637681Domain d2c7nj1: 2c7n J:1-72 [130077]
        Other proteins in same PDB: d2c7na1, d2c7nc1, d2c7ng1, d2c7ni1
        automatically matched to d1aara_
        complexed with zn
      6. 1637682Domain d2c7nl1: 2c7n L:1-74 [130078]
        Other proteins in same PDB: d2c7na1, d2c7nc1, d2c7ng1, d2c7ni1
        automatically matched to d1aara_
        complexed with zn
    9. Domains for 2d3g:
      1. 1637666Domain d2d3ga_: 2d3g A: [131206]
        automated match to d1aara_
      2. 1637667Domain d2d3gb_: 2d3g B: [131207]
        automated match to d1aara_
    10. Domain for 2dx5:
    11. Domain for 2fid:
    12. Domains for 2fif:
      1. 1637688Domain d2fifa_: 2fif A: [133518]
        Other proteins in same PDB: d2fifb_, d2fifd_, d2fiff_
        automated match to d1aara_
        complexed with so4, zn
      2. 1637689Domain d2fifc_: 2fif C: [133520]
        Other proteins in same PDB: d2fifb_, d2fifd_, d2fiff_
        automated match to d1aara_
        complexed with so4, zn
      3. 1637690Domain d2fife_: 2fif E: [133522]
        Other proteins in same PDB: d2fifb_, d2fifd_, d2fiff_
        automated match to d1aara_
        complexed with so4, zn
    13. Domain for 2hd5:
    14. Domain for 2oob:
    15. Domains for 2qho:
      1. 1637672Domain d2qhoa_: 2qho A: [150790]
        automated match to d1aara_
      2. 1637673Domain d2qhoc_: 2qho C: [150791]
        automated match to d1aara_
      3. 1637674Domain d2qhoe_: 2qho E: [150792]
        automated match to d1aara_
      4. 1637675Domain d2qhog_: 2qho G: [150793]
        automated match to d1aara_
    16. Domains for 2wwz:
      1. 1637654Domain d2wwza_: 2wwz A: [169677]
        automated match to d1aara_
        complexed with zn
      2. 1637655Domain d2wwzb_: 2wwz B: [169678]
        automated match to d1aara_
        complexed with zn
    17. Domains for 2xbb:
      1. 1637691Domain d2xbbc_: 2xbb C: [169990]
        Other proteins in same PDB: d2xbba_, d2xbbb_
        automated match to d1aara_
        complexed with gol
      2. 1637692Domain d2xbbd_: 2xbb D: [169991]
        Other proteins in same PDB: d2xbba_, d2xbbb_
        automated match to d1aara_
        complexed with gol
    18. Domains for 2zcc:
      1. 1637656Domain d2zcca_: 2zcc A: [154337]
        automated match to d1aara_
        complexed with zn
      2. 1637657Domain d2zccb_: 2zcc B: [154338]
        automated match to d1aara_
        complexed with zn
      3. 1637658Domain d2zccc_: 2zcc C: [154339]
        automated match to d1aara_
        complexed with zn
    19. Domains for 3ldz:
      1. 1637701Domain d3ldze_: 3ldz E: [180204]
        Other proteins in same PDB: d3ldza_, d3ldzb_, d3ldzc_, d3ldzd_
        automated match to d1p3qu_
      2. 1637702Domain d3ldzf_: 3ldz F: [180205]
        Other proteins in same PDB: d3ldza_, d3ldzb_, d3ldzc_, d3ldzd_
        automated match to d1p3qu_
      3. 1637703Domain d3ldzg_: 3ldz G: [180206]
        Other proteins in same PDB: d3ldza_, d3ldzb_, d3ldzc_, d3ldzd_
        automated match to d1p3qu_
    20. Domains for 3m3j:
      1. 1637660Domain d3m3ja_: 3m3j A: [180788]
        automated match to d1aara_
        complexed with edo, so4
      2. 1637661Domain d3m3jb_: 3m3j B: [180789]
        automated match to d1aara_
        complexed with edo, so4
      3. 1637662Domain d3m3jc_: 3m3j C: [180790]
        automated match to d1aara_
        complexed with edo, so4
      4. 1637663Domain d3m3jd_: 3m3j D: [180791]
        automated match to d1aara_
        complexed with edo, so4
      5. 1637664Domain d3m3je_: 3m3j E: [180792]
        automated match to d1aara_
        complexed with edo, so4
      6. 1637665Domain d3m3jf_: 3m3j F: [180793]
        automated match to d1aara_
        complexed with edo, so4
    21. Domain for 4bbn:
    22. Domain for 4ljo:
    23. Domain for 4ljp:
    24. Domain for 4m0w:
  4. 1637706Human (Homo sapiens) [TaxId:9606] [54239] (126 PDB entries)
    Uniprot P62988
    identical sequence in many other species
    1. Domain for 1c3t:
    2. Domain for 1d3z:
    3. Domains for 1f9j:
      1. 1637873Domain d1f9ja_: 1f9j A: [37590]
        a new crystal form of tetraubiquitin
      2. 1637874Domain d1f9jb_: 1f9j B: [37591]
        a new crystal form of tetraubiquitin
    4. Domain for 1fxt:
    5. Domain for 1g6j:
    6. Domains for 1gjz:
      1. 1637954Domain d1gjza_: 1gjz A: [65223]
      2. 1637955Domain d1gjzb_: 1gjz B: [65224]
    7. Domains for 1nbf:
      1. 1637836Domain d1nbfc_: 1nbf C: [80389]
        Other proteins in same PDB: d1nbfa_, d1nbfb_, d1nbfe_
        complex with USP7
      2. 1637837Domain d1nbfd_: 1nbf D: [80390]
        Other proteins in same PDB: d1nbfa_, d1nbfb_, d1nbfe_
        complex with USP7
    8. Domain for 1ogw:
      • 1637711Domain d1ogwa_: 1ogw A: [87001]
        synthetic protein with fluoro-Leu at 50 and 67
    9. Domain for 1q5w:
    10. Domains for 1s1q:
      1. 1637788Domain d1s1qb_: 1s1q B: [98352]
        Other proteins in same PDB: d1s1qa_, d1s1qc_
        complexed with acy, cu, so4
      2. 1637789Domain d1s1qd_: 1s1q D: [98354]
        Other proteins in same PDB: d1s1qa_, d1s1qc_
        complexed with acy, cu, so4
    11. Domain for 1sif:
    12. Domains for 1tbe:
      1. 1637842Domain d1tbea_: 1tbe A: [37588]
        tetra-ubiquitin
      2. 1637843Domain d1tbeb_: 1tbe B: [37589]
        tetra-ubiquitin
    13. Domain for 1ubi:
    14. Domain for 1ubq:
    15. Domain for 1ud7:
    16. Domains for 1xd3:
      1. 1637709Domain d1xd3b_: 1xd3 B: [115146]
        Other proteins in same PDB: d1xd3a_, d1xd3c_
        complexed with gve, mg
      2. 1637710Domain d1xd3d_: 1xd3 D: [115148]
        Other proteins in same PDB: d1xd3a_, d1xd3c_
        complexed with gve, mg
    17. Domain for 1zgu:
    18. Domain for 2ayo:
    19. Domains for 2g45:
      1. 1637790Domain d2g45b_: 2g45 B: [134578]
        Other proteins in same PDB: d2g45a_, d2g45d_
        automated match to d1aara_
        complexed with cl, zn
      2. 1637791Domain d2g45e_: 2g45 E: [134579]
        Other proteins in same PDB: d2g45a_, d2g45d_
        automated match to d1aara_
        complexed with cl, zn
    20. Domain for 2gmi:
    21. Domain for 2hth:
    22. Domain for 2ibi:
    23. Domains for 2j7q:
      1. 1637735Domain d2j7qb_: 2j7q B: [138127]
        Other proteins in same PDB: d2j7qa1, d2j7qc1
        automated match to d1aara_
        complexed with gol, gve, mg, pg4
      2. 1637736Domain d2j7qd_: 2j7q D: [138128]
        Other proteins in same PDB: d2j7qa1, d2j7qc1
        automated match to d1aara_
        complexed with gol, gve, mg, pg4
    24. Domains for 2jf5:
      1. 1637777Domain d2jf5a_: 2jf5 A: [148030]
        automated match to d1aara_
        complexed with cd, cl, co, mg
      2. 1637778Domain d2jf5b_: 2jf5 B: [148031]
        automated match to d1aara_
        complexed with cd, cl, co, mg
    25. Domains for 2jri:
      1. 1637965Domain d2jrib_: 2jri B: [148185]
        automated match to d4auqc_
      2. 1637966Domain d2jric_: 2jri C: [148186]
        automated match to d4auqc_
    26. Domain for 2jy6:
    27. Domain for 2jzz:
    28. Domain for 2k6d:
    29. Domain for 2k8b:
    30. Domain for 2k8c:
    31. Domains for 2kdf:
      1. 1637971Domain d2kdfb_: 2kdf B: [242467]
        automated match to d4auqc_
      2. 1637972Domain d2kdfc_: 2kdf C: [242468]
        automated match to d4auqc_
    32. Domain for 2khw:
    33. Domain for 2kn5:
    34. Domain for 2ktf:
    35. Domain for 2kwu:
    36. Domain for 2kwv:
    37. Domain for 2l0f:
    38. Domain for 2lvo:
    39. Domains for 2lvp:
      1. 1637945Domain d2lvpa_: 2lvp A: [243011]
        automated match to d4auqc_
      2. 1637946Domain d2lvpb_: 2lvp B: [243012]
        automated match to d4auqc_
    40. Domains for 2lvq:
      1. 1637943Domain d2lvqa_: 2lvq A: [243013]
        automated match to d4auqc_
      2. 1637944Domain d2lvqb_: 2lvq B: [243014]
        automated match to d4auqc_
    41. Domain for 2lz6:
    42. Domain for 2mbh:
    43. Domains for 2mbo:
      1. 1637937Domain d2mboa_: 2mbo A: [243163]
        automated match to d4auqc_
      2. 1637938Domain d2mbob_: 2mbo B: [243164]
        automated match to d4auqc_
    44. Domains for 2mbq:
      1. 1637935Domain d2mbqa_: 2mbq A: [243165]
        automated match to d4auqc_
      2. 1637936Domain d2mbqb_: 2mbq B: [243166]
        automated match to d4auqc_
    45. Domain for 2mcn:
    46. Domain for 2mj5:
    47. Domains for 2o6v:
      1. 1637815Domain d2o6va_: 2o6v A: [138922]
        Other proteins in same PDB: d2o6vb_, d2o6vf_
        automated match to d1aara_
        complexed with mes, so4
      2. 1637816Domain d2o6vc_: 2o6v C: [138924]
        Other proteins in same PDB: d2o6vb_, d2o6vf_
        automated match to d1aara_
        complexed with mes, so4
      3. 1637817Domain d2o6vd1: 2o6v D:301-376 [145715]
        Other proteins in same PDB: d2o6vb_, d2o6vf_
        complexed with mes, so4
      4. 1637818Domain d2o6ve_: 2o6v E: [138925]
        Other proteins in same PDB: d2o6vb_, d2o6vf_
        automated match to d1aara_
        complexed with mes, so4
      5. 1637819Domain d2o6vg_: 2o6v G: [138927]
        Other proteins in same PDB: d2o6vb_, d2o6vf_
        automated match to d1aara_
        complexed with mes, so4
      6. 1637820Domain d2o6vh_: 2o6v H: [145716]
        Other proteins in same PDB: d2o6vb_, d2o6vf_
        automated match to d2o6vd1
        complexed with mes, so4
    48. Domains for 2rr9:
      1. 1637940Domain d2rr9a_: 2rr9 A: [243755]
        automated match to d4auqc_
        protein/DNA complex
      2. 1637941Domain d2rr9b_: 2rr9 B: [243756]
        automated match to d4auqc_
        protein/DNA complex
    49. Domain for 2rsu:
    50. Domain for 2ru6:
    51. Domains for 2wdt:
      1. 1637809Domain d2wdtb_: 2wdt B: [169256]
        Other proteins in same PDB: d2wdta_, d2wdtc_
        automated match to d1uzxb_
        complexed with cl
      2. 1637810Domain d2wdtd_: 2wdt D: [169258]
        Other proteins in same PDB: d2wdta_, d2wdtc_
        automated match to d1uzxb_
        complexed with cl
    52. Domains for 2xew:
      1. 1637794Domain d2xewa_: 2xew A: [170063]
        automated match to d1aara_
        complexed with cl, edo, flc
      2. 1637795Domain d2xewb_: 2xew B: [170064]
        automated match to d1aara_
        complexed with cl, edo, flc
      3. 1637796Domain d2xewc_: 2xew C: [170065]
        automated match to d1aara_
        complexed with cl, edo, flc
      4. 1637797Domain d2xewd_: 2xew D: [170066]
        automated match to d1aara_
        complexed with cl, edo, flc
      5. 1637798Domain d2xewe_: 2xew E: [170067]
        automated match to d1aara_
        complexed with cl, edo, flc
      6. 1637799Domain d2xewf_: 2xew F: [170068]
        automated match to d1aara_
        complexed with cl, edo, flc
      7. 1637800Domain d2xewg_: 2xew G: [170069]
        automated match to d1aara_
        complexed with cl, edo, flc
      8. 1637801Domain d2xewh_: 2xew H: [170070]
        automated match to d1aara_
        complexed with cl, edo, flc
      9. 1637802Domain d2xewi_: 2xew I: [170071]
        automated match to d1aara_
        complexed with cl, edo, flc
      10. 1637803Domain d2xewj_: 2xew J: [170072]
        automated match to d1aara_
        complexed with cl, edo, flc
      11. 1637804Domain d2xewk_: 2xew K: [170073]
        automated match to d1aara_
        complexed with cl, edo, flc
      12. 1637805Domain d2xewl_: 2xew L: [170074]
        automated match to d1aara_
        complexed with cl, edo, flc
    53. Domain for 2z59:
    54. Domain for 3a33:
    55. Domains for 3alb:
      1. 1637749Domain d3alba_: 3alb A: [172232]
        automated match to d1aara_
        complexed with so4
      2. 1637750Domain d3albb_: 3alb B: [172233]
        automated match to d1aara_
        complexed with so4
      3. 1637751Domain d3albc_: 3alb C: [172234]
        automated match to d1aara_
        complexed with so4
      4. 1637752Domain d3albd_: 3alb D: [172235]
        automated match to d1aara_
        complexed with so4
    56. Domains for 3aul:
      1. 1637812Domain d3aula_: 3aul A: [172342]
        automated match to d1aara_
      2. 1637813Domain d3aulb_: 3aul B: [172343]
        automated match to d1aara_
    57. Domains for 3axc:
      1. 1637807Domain d3axca1: 3axc A:1-76 [245262]
        automated match to d4auqc_
        complexed with gol
      2. 1637808Domain d3axca2: 3axc A:77-149 [245263]
        automated match to d4auqc_
        complexed with gol
    58. Domains for 3b08:
      1. 1637717Domain d3b08a1: 3b08 A:1-76 [245311]
        automated match to d4auqc_
        complexed with tre, zn
      2. 1637718Domain d3b08a2: 3b08 A:77-151 [245312]
        automated match to d4auqc_
        complexed with tre, zn
      3. 1637719Domain d3b08d1: 3b08 D:1-76 [245313]
        automated match to d4auqc_
        complexed with tre, zn
      4. 1637720Domain d3b08d2: 3b08 D:77-151 [245314]
        automated match to d4auqc_
        complexed with tre, zn
      5. 1637721Domain d3b08g1: 3b08 G:1-76 [245315]
        automated match to d4auqc_
        complexed with tre, zn
      6. 1637722Domain d3b08g2: 3b08 G:77-150 [245316]
        automated match to d4auqc_
        complexed with tre, zn
      7. 1637723Domain d3b08j1: 3b08 J:1-76 [245317]
        automated match to d4auqc_
        complexed with tre, zn
      8. 1637724Domain d3b08j2: 3b08 J:77-149 [245318]
        automated match to d4auqc_
        complexed with tre, zn
    59. Domains for 3b0a:
      1. 1637755Domain d3b0aa1: 3b0a A:1-76 [245319]
        automated match to d4auqc_
        complexed with tam, zn
      2. 1637756Domain d3b0aa2: 3b0a A:77-151 [245320]
        automated match to d4auqc_
        complexed with tam, zn
      3. 1637757Domain d3b0ad1: 3b0a D:1-76 [245321]
        automated match to d4auqc_
        complexed with tam, zn
      4. 1637758Domain d3b0ad2: 3b0a D:77-152 [245322]
        automated match to d4auqc_
        complexed with tam, zn
    60. Domain for 3by4:
    61. Domains for 3c0r:
      1. 1637824Domain d3c0rb_: 3c0r B: [155839]
        automated match to d1uzxb_
        complexed with 3cn
      2. 1637825Domain d3c0rd_: 3c0r D: [155840]
        automated match to d1uzxb_
        complexed with 3cn
    62. Domains for 3dvg:
      1. 1637863Domain d3dvgx_: 3dvg X: [157892]
        Other proteins in same PDB: d3dvga1, d3dvga2, d3dvgb1, d3dvgb2
        automated match to d1aara_
      2. 1637864Domain d3dvgy_: 3dvg Y: [157893]
        Other proteins in same PDB: d3dvga1, d3dvga2, d3dvgb1, d3dvgb2
        automated match to d1aara_
    63. Domains for 3dvn:
      1. 1637867Domain d3dvnu_: 3dvn U: [157902]
        Other proteins in same PDB: d3dvna1, d3dvna2, d3dvnb1, d3dvnb2, d3dvnh1, d3dvnh2, d3dvnl1, d3dvnl2
        automated match to d1aara_
      2. 1637868Domain d3dvnv_: 3dvn V: [157903]
        Other proteins in same PDB: d3dvna1, d3dvna2, d3dvnb1, d3dvnb2, d3dvnh1, d3dvnh2, d3dvnl1, d3dvnl2
        automated match to d1aara_
      3. 1637869Domain d3dvnx_: 3dvn X: [157904]
        Other proteins in same PDB: d3dvna1, d3dvna2, d3dvnb1, d3dvnb2, d3dvnh1, d3dvnh2, d3dvnl1, d3dvnl2
        automated match to d1aara_
      4. 1637870Domain d3dvny_: 3dvn Y: [157905]
        Other proteins in same PDB: d3dvna1, d3dvna2, d3dvnb1, d3dvnb2, d3dvnh1, d3dvnh2, d3dvnl1, d3dvnl2
        automated match to d1aara_
    64. Domains for 3eec:
      1. 1637933Domain d3eeca_: 3eec A: [245855]
        automated match to d4auqc_
        complexed with cd
      2. 1637934Domain d3eecb_: 3eec B: [245856]
        automated match to d4auqc_
        complexed with cd
    65. Domain for 3efu:
    66. Domains for 3ehv:
      1. 1637766Domain d3ehva_: 3ehv A: [174939]
        automated match to d1aara_
        complexed with zn
      2. 1637767Domain d3ehvb_: 3ehv B: [174940]
        automated match to d1aara_
        complexed with zn
      3. 1637768Domain d3ehvc_: 3ehv C: [174941]
        automated match to d1aara_
        complexed with zn
    67. Domains for 3h7p:
      1. 1637769Domain d3h7pa_: 3h7p A: [177310]
        automated match to d1aara_
        complexed with cd
      2. 1637770Domain d3h7pb_: 3h7p B: [177311]
        automated match to d1aara_
        complexed with cd
    68. Domains for 3h7s:
      1. 1637792Domain d3h7sa_: 3h7s A: [177312]
        automated match to d1aara_
        complexed with zn
      2. 1637793Domain d3h7sb_: 3h7s B: [177313]
        automated match to d1aara_
        complexed with zn
    69. Domains for 3hm3:
      1. 1637772Domain d3hm3a_: 3hm3 A: [177688]
        automated match to d1aara_
        complexed with zn
      2. 1637773Domain d3hm3b_: 3hm3 B: [177689]
        automated match to d1aara_
        complexed with zn
      3. 1637774Domain d3hm3c_: 3hm3 C: [177690]
        automated match to d1aara_
        complexed with zn
      4. 1637775Domain d3hm3d_: 3hm3 D: [177691]
        automated match to d1aara_
        complexed with zn
    70. Domains for 3i3t:
      1. 1637859Domain d3i3tb_: 3i3t B: [178067]
        Other proteins in same PDB: d3i3ta_, d3i3tc_, d3i3te_, d3i3tg_
        automated match to d1uzxb_
        complexed with neh, zn
      2. 1637860Domain d3i3td_: 3i3t D: [178069]
        Other proteins in same PDB: d3i3ta_, d3i3tc_, d3i3te_, d3i3tg_
        automated match to d1uzxb_
        complexed with neh, zn
      3. 1637861Domain d3i3tf_: 3i3t F: [178071]
        Other proteins in same PDB: d3i3ta_, d3i3tc_, d3i3te_, d3i3tg_
        automated match to d1uzxb_
        complexed with neh, zn
      4. 1637862Domain d3i3th_: 3i3t H: [178073]
        Other proteins in same PDB: d3i3ta_, d3i3tc_, d3i3te_, d3i3tg_
        automated match to d1uzxb_
        complexed with neh, zn
    71. Domain for 3ifw:
    72. Domains for 3ihp:
      1. 1637910Domain d3ihpc_: 3ihp C: [178324]
        automated match to d1uzxb_
        complexed with cl, neh, zn
      2. 1637911Domain d3ihpd_: 3ihp D: [178325]
        automated match to d1uzxb_
        complexed with cl, neh, zn
    73. Domain for 3jsv:
    74. Domains for 3jw0:
      1. 1637927Domain d3jw0x_: 3jw0 X: [247068]
        Other proteins in same PDB: d3jw0a_, d3jw0b_, d3jw0c_, d3jw0d_
        automated match to d3dbhi_
      2. 1637928Domain d3jw0y_: 3jw0 Y: [247069]
        Other proteins in same PDB: d3jw0a_, d3jw0b_, d3jw0c_, d3jw0d_
        automated match to d3dbhi_
    75. Domain for 3k9o:
    76. Domain for 3kvf:
    77. Domain for 3kw5:
    78. Domain for 3mhs:
    79. Domains for 3mtn:
      1. 1637871Domain d3mtnb_: 3mtn B: [181547]
        Other proteins in same PDB: d3mtna_, d3mtnc_
        automated match to d1p3qu_
        complexed with cl, gol, zn
      2. 1637872Domain d3mtnd_: 3mtn D: [181549]
        Other proteins in same PDB: d3mtna_, d3mtnc_
        automated match to d1p3qu_
        complexed with cl, gol, zn
    80. Domains for 3n30:
      1. 1637929Domain d3n30a_: 3n30 A: [247841]
        automated match to d4auqc_
        complexed with zn
      2. 1637930Domain d3n30b_: 3n30 B: [247842]
        automated match to d4auqc_
        complexed with zn
    81. Domain for 3n32:
    82. Domain for 3n3k:
    83. Domain for 3nhe:
    84. Domains for 3ns8:
      1. 1637733Domain d3ns8a_: 3ns8 A: [214037]
        automated match to d1ogwa_
        complexed with epe, gol
      2. 1637734Domain d3ns8b_: 3ns8 B: [214038]
        automated match to d1ogwa_
        complexed with epe, gol
    85. Domains for 3o65:
      1. 1637849Domain d3o65b_: 3o65 B: [182825]
        automated match to d1uzxb_
        complexed with na
      2. 1637850Domain d3o65d_: 3o65 D: [182826]
        automated match to d1uzxb_
        complexed with na
      3. 1637851Domain d3o65f_: 3o65 F: [182827]
        automated match to d1uzxb_
        complexed with na
      4. 1637852Domain d3o65h_: 3o65 H: [182828]
        automated match to d1uzxb_
        complexed with na
    86. Domains for 3oj3:
      1. 1637899Domain d3oj3a_: 3oj3 A: [183060]
        automated match to d1aara_
        complexed with zn
      2. 1637900Domain d3oj3b_: 3oj3 B: [183061]
        automated match to d1aara_
        complexed with zn
      3. 1637901Domain d3oj3c_: 3oj3 C: [183062]
        automated match to d1aara_
        complexed with zn
      4. 1637902Domain d3oj3d_: 3oj3 D: [183063]
        automated match to d1aara_
        complexed with zn
      5. 1637903Domain d3oj3e_: 3oj3 E: [183064]
        automated match to d1aara_
        complexed with zn
      6. 1637904Domain d3oj3f_: 3oj3 F: [183065]
        automated match to d1aara_
        complexed with zn
      7. 1637905Domain d3oj3g_: 3oj3 G: [183066]
        automated match to d1aara_
        complexed with zn
      8. 1637906Domain d3oj3h_: 3oj3 H: [183067]
        automated match to d1aara_
        complexed with zn
    87. Domain for 3ons:
    88. Domains for 3phw:
      1. 1637784Domain d3phwb_: 3phw B: [183745]
        automated match to d1uzxb_
        complexed with neh
      2. 1637785Domain d3phwd_: 3phw D: [183746]
        automated match to d1uzxb_
        complexed with neh
      3. 1637786Domain d3phwf_: 3phw F: [183747]
        automated match to d1uzxb_
        complexed with neh
      4. 1637787Domain d3phwh_: 3phw H: [183748]
        automated match to d1uzxb_
        complexed with neh
    89. Domains for 3prm:
      1. 1637827Domain d3prmb_: 3prm B: [183934]
        automated match to d1uzxb_
        complexed with 3cn
      2. 1637828Domain d3prmd_: 3prm D: [183935]
        automated match to d1uzxb_
        complexed with 3cn
    90. Domains for 3prp:
      1. 1637725Domain d3prpb_: 3prp B: [183936]
        automated match to d1uzxb_
        complexed with 3cn
      2. 1637726Domain d3prpd_: 3prp D: [183937]
        automated match to d1uzxb_
        complexed with 3cn
    91. Domain for 3pt2:
    92. Domains for 3ptf:
      1. 1637857Domain d3ptfc_: 3ptf C: [183970]
        Other proteins in same PDB: d3ptfa_, d3ptfb_
        automated match to d1aara_
      2. 1637858Domain d3ptfd_: 3ptf D: [183971]
        Other proteins in same PDB: d3ptfa_, d3ptfb_
        automated match to d1aara_
    93. Domains for 3rul:
      1. 1637853Domain d3rula_: 3rul A: [195221]
        automated match to d3noba_
        complexed with cl, m12, man, n1l, tla
      2. 1637854Domain d3rulb_: 3rul B: [195220]
        automated match to d3noba_
        complexed with cl, m12, man, n1l, tla
      3. 1637855Domain d3rulc_: 3rul C: [195219]
        automated match to d3noba_
        complexed with cl, m12, man, n1l, tla
      4. 1637856Domain d3ruld_: 3rul D: [200535]
        automated match to d3rulc_
        complexed with cl, m12, man, n1l, tla
    94. Domains for 3tbl:
      1. 1637919Domain d3tbld_: 3tbl D: [216728]
        Other proteins in same PDB: d3tbla1, d3tbla2, d3tblb1, d3tblb2, d3tblc1, d3tblc2
        automated match to d1ogwa_
      2. 1637920Domain d3tble_: 3tbl E: [216729]
        Other proteins in same PDB: d3tbla1, d3tbla2, d3tblb1, d3tblb2, d3tblc1, d3tblc2
        automated match to d1ogwa_
    95. Domains for 3tmp:
      1. 1637759Domain d3tmpb_: 3tmp B: [185879]
        automated match to d1aara_
      2. 1637760Domain d3tmpd_: 3tmp D: [185880]
        automated match to d1aara_
      3. 1637761Domain d3tmpf_: 3tmp F: [185881]
        automated match to d1aara_
      4. 1637762Domain d3tmph_: 3tmp H: [185882]
        automated match to d1aara_
    96. Domains for 3u30:
      1. 1637844Domain d3u30a1: 3u30 A:-1-75 [239839]
        Other proteins in same PDB: d3u30b1, d3u30b2, d3u30e1, d3u30e2
        automated match to d4fjvb_
      2. 1637845Domain d3u30a2: 3u30 A:76-147 [239840]
        Other proteins in same PDB: d3u30b1, d3u30b2, d3u30e1, d3u30e2
        automated match to d4fjvb_
      3. 1637846Domain d3u30d1: 3u30 D:2-75 [239841]
        Other proteins in same PDB: d3u30b1, d3u30b2, d3u30e1, d3u30e2
        automated match to d4fjvb_
      4. 1637847Domain d3u30d2: 3u30 D:76-146 [239842]
        Other proteins in same PDB: d3u30b1, d3u30b2, d3u30e1, d3u30e2
        automated match to d4fjvb_
    97. Domain for 3ugb:
    98. Domain for 3v6c:
    99. Domain for 3v6e:
    100. Domains for 3vuw:
      1. 1637763Domain d3vuwa_: 3vuw A: [218106]
        automated match to d1ogwa_
        complexed with k, zn
      2. 1637764Domain d3vuwb_: 3vuw B: [218107]
        automated match to d1ogwa_
        complexed with k, zn
      3. 1637765Domain d3vuwc_: 3vuw C: [218108]
        automated match to d1ogwa_
        complexed with k, zn
    101. Domains for 3vux:
      1. 1637714Domain d3vuxa_: 3vux A: [218109]
        automated match to d1ogwa_
        complexed with edo, k, zn
      2. 1637715Domain d3vuxb_: 3vux B: [218110]
        automated match to d1ogwa_
        complexed with edo, k, zn
      3. 1637716Domain d3vuxc_: 3vux C: [218111]
        automated match to d1ogwa_
        complexed with edo, k, zn
    102. Domains for 3vuy:
      1. 1637781Domain d3vuya_: 3vuy A: [218112]
        automated match to d1ogwa_
        complexed with k, zn
      2. 1637782Domain d3vuyb_: 3vuy B: [218113]
        automated match to d1ogwa_
        complexed with k, zn
      3. 1637783Domain d3vuyc_: 3vuy C: [218114]
        automated match to d1ogwa_
        complexed with k, zn
    103. Domains for 3zlz:
      1. 1637922Domain d3zlza_: 3zlz A: [201344]
        automated match to d1zgub1
        complexed with zn
      2. 1637923Domain d3zlzb_: 3zlz B: [193162]
        automated match to d1zgub1
        complexed with zn
    104. Domains for 4bos:
      1. 1637821Domain d4bosc_: 4bos C: [219533]
        automated match to d1ogwa_
        complexed with mg, no3
      2. 1637822Domain d4bose_: 4bos E: [219534]
        automated match to d1ogwa_
        complexed with mg, no3
    105. Domain for 4bvu:
    106. Domains for 4dhj:
      1. 1637830Domain d4dhjb_: 4dhj B: [201701]
        Other proteins in same PDB: d4dhja_, d4dhjc_, d4dhje_, d4dhjg_, d4dhji_, d4dhjk_, d4dhjl_, d4dhjn_
        automated match to d1ogwa_
      2. 1637831Domain d4dhjd_: 4dhj D: [201703]
        Other proteins in same PDB: d4dhja_, d4dhjc_, d4dhje_, d4dhjg_, d4dhji_, d4dhjk_, d4dhjl_, d4dhjn_
        automated match to d4bbnf_
      3. 1637832Domain d4dhjf_: 4dhj F: [201704]
        Other proteins in same PDB: d4dhja_, d4dhjc_, d4dhje_, d4dhjg_, d4dhji_, d4dhjk_, d4dhjl_, d4dhjn_
        automated match to d1ogwa_
      4. 1637833Domain d4dhjh_: 4dhj H: [201706]
        Other proteins in same PDB: d4dhja_, d4dhjc_, d4dhje_, d4dhjg_, d4dhji_, d4dhjk_, d4dhjl_, d4dhjn_
        automated match to d4bbnf_
      5. 1637834Domain d4dhjj_: 4dhj J: [201707]
        Other proteins in same PDB: d4dhja_, d4dhjc_, d4dhje_, d4dhjg_, d4dhji_, d4dhjk_, d4dhjl_, d4dhjn_
        automated match to d1ogwa_
      6. 1637835Domain d4dhjm_: 4dhj M: [201708]
        Other proteins in same PDB: d4dhja_, d4dhjc_, d4dhje_, d4dhjg_, d4dhji_, d4dhjk_, d4dhjl_, d4dhjn_
        automated match to d1ogwa_
    107. Domains for 4dhz:
      1. 1637924Domain d4dhzb_: 4dhz B: [251457]
        Other proteins in same PDB: d4dhzf_
        automated match to d4auqc_
      2. 1637925Domain d4dhze_: 4dhz E: [251458]
        Other proteins in same PDB: d4dhzf_
        automated match to d3rula_
    108. Domains for 4fjv:
      1. 1637779Domain d4fjvb_: 4fjv B: [197304]
        Other proteins in same PDB: d4fjva_, d4fjvc_
        automated match to d3nobh_
        complexed with gol, neh
      2. 1637780Domain d4fjvd_: 4fjv D: [202038]
        Other proteins in same PDB: d4fjva_, d4fjvc_
        automated match to d4fjvb_
        complexed with gol, neh
    109. Domains for 4hxd:
      1. 1637907Domain d4hxda_: 4hxd A: [196901]
        automated match to d3noba_
        complexed with 3cn, so4
      2. 1637908Domain d4hxdc_: 4hxd C: [202509]
        automated match to d1xd3b_
        complexed with 3cn, so4
    110. Domain for 4i6l:
    111. Domains for 4i6n:
      1. 1637731Domain d4i6nb_: 4i6n B: [197189]
        Other proteins in same PDB: d4i6na_, d4i6nc_
        automated match to d3noba_
        complexed with dtt, gve, na
      2. 1637732Domain d4i6nd_: 4i6n D: [202578]
        Other proteins in same PDB: d4i6na_, d4i6nc_
        automated match to d1xd3b_
        complexed with dtt, gve, na
    112. Domain for 4ig7:
    113. Domain for 4ium:
    114. Domain for 4jqw:
    115. Domains for 4k7s:
      1. 1637742Domain d4k7sa_: 4k7s A: [224193]
        automated match to d1ogwa_
        complexed with act, edo, zn
      2. 1637743Domain d4k7sb_: 4k7s B: [224194]
        automated match to d1ogwa_
        complexed with act, edo, zn
      3. 1637744Domain d4k7sc_: 4k7s C: [224195]
        automated match to d1ogwa_
        complexed with act, edo, zn
    116. Domains for 4k7u:
      1. 1637727Domain d4k7ua_: 4k7u A: [224196]
        automated match to d1ogwa_
        complexed with act, edo, peg, zn
      2. 1637728Domain d4k7ub_: 4k7u B: [224197]
        automated match to d1ogwa_
        complexed with act, edo, peg, zn
      3. 1637729Domain d4k7uc_: 4k7u C: [224198]
        automated match to d1ogwa_
        complexed with act, edo, peg, zn
    117. Domains for 4k7w:
      1. 1637746Domain d4k7wa_: 4k7w A: [224199]
        automated match to d1ogwa_
        complexed with act, edo, zn
      2. 1637747Domain d4k7wb_: 4k7w B: [224200]
        automated match to d1ogwa_
        complexed with act, edo, zn
      3. 1637748Domain d4k7wc_: 4k7w C: [224201]
        automated match to d1ogwa_
        complexed with act, edo, zn
    118. Domains for 4ksk:
      1. 1637840Domain d4kskc_: 4ksk C: [202875]
        automated match to d4ap4f_
        complexed with so4
      2. 1637841Domain d4kskd_: 4ksk D: [197271]
        automated match to d3nobh_
        complexed with so4
    119. Domains for 4ksl:
      1. 1637875Domain d4kslc1: 4ksl C:0-76 [253412]
        automated match to d4auqc_
      2. 1637876Domain d4kslc2: 4ksl C:1001-1073 [253413]
        automated match to d4auqc_
      3. 1637877Domain d4ksld1: 4ksl D:1-76 [253414]
        automated match to d4auqc_
      4. 1637878Domain d4ksld2: 4ksl D:1001-1073 [253415]
        automated match to d4auqc_
      5. 1637879Domain d4kslf1: 4ksl F:0-76 [253416]
        automated match to d4auqc_
      6. 1637880Domain d4kslf2: 4ksl F:1001-1073 [253417]
        automated match to d4auqc_
      7. 1637881Domain d4kslh1: 4ksl H:1-76 [253418]
        automated match to d4auqc_
      8. 1637882Domain d4kslh2: 4ksl H:1001-1073 [253419]
        automated match to d4auqc_
      9. 1637883Domain d4kslj1: 4ksl J:0-76 [253420]
        automated match to d4auqc_
      10. 1637884Domain d4kslj2: 4ksl J:1001-1073 [253421]
        automated match to d4auqc_
      11. 1637885Domain d4ksll1: 4ksl L:0-76 [253422]
        automated match to d4auqc_
      12. 1637886Domain d4ksll2: 4ksl L:1001-1073 [253423]
        automated match to d4auqc_
      13. 1637887Domain d4ksln1: 4ksl N:0-76 [253424]
        automated match to d4auqc_
      14. 1637888Domain d4ksln2: 4ksl N:1001-1073 [253425]
        automated match to d4auqc_
      15. 1637889Domain d4kslp1: 4ksl P:1-76 [253426]
        automated match to d4auqc_
      16. 1637890Domain d4kslp2: 4ksl P:1001-1073 [253427]
        automated match to d4auqc_
      17. 1637891Domain d4kslr1: 4ksl R:0-76 [253428]
        automated match to d4auqc_
      18. 1637892Domain d4kslr2: 4ksl R:1001-1073 [253429]
        automated match to d4auqc_
      19. 1637893Domain d4kslt1: 4ksl T:1-76 [253430]
        automated match to d4auqc_
      20. 1637894Domain d4kslt2: 4ksl T:1001-1073 [253431]
        automated match to d4auqc_
      21. 1637895Domain d4kslv1: 4ksl V:0-76 [253432]
        automated match to d4auqc_
      22. 1637896Domain d4kslv2: 4ksl V:1001-1073 [253433]
        automated match to d4auqc_
      23. 1637897Domain d4kslx1: 4ksl X:1-76 [253434]
        automated match to d4auqc_
      24. 1637898Domain d4kslx2: 4ksl X:1001-1073 [253435]
        automated match to d4auqc_
    120. Domains for 4ldt:
      1. 1637753Domain d4ldtb_: 4ldt B: [227601]
        Other proteins in same PDB: d4ldtc_
        automated match to d1ogwa_
        complexed with edo, mg
      2. 1637754Domain d4ldtd_: 4ldt D: [227600]
        Other proteins in same PDB: d4ldtc_
        automated match to d1ogwa_
        complexed with edo, mg
    121. Domains for 4mdk:
      1. 1637914Domain d4mdke_: 4mdk E: [229684]
        Other proteins in same PDB: d4mdka_, d4mdkb_, d4mdkc_, d4mdkd_
        automated match to d4ap4f_
        complexed with u94
      2. 1637915Domain d4mdkf_: 4mdk F: [229679]
        Other proteins in same PDB: d4mdka_, d4mdkb_, d4mdkc_, d4mdkd_
        automated match to d4ap4f_
        complexed with u94
      3. 1637916Domain d4mdkg_: 4mdk G: [229683]
        Other proteins in same PDB: d4mdka_, d4mdkb_, d4mdkc_, d4mdkd_
        automated match to d4ap4c_
        complexed with u94
      4. 1637917Domain d4mdkh_: 4mdk H: [229682]
        Other proteins in same PDB: d4mdka_, d4mdkb_, d4mdkc_, d4mdkd_
        automated match to d4ap4f_
        complexed with u94
    122. Domain for 4mm3:
    123. Domain for 4nql:
    124. Domain for 4rf0:
    125. Domain for 4rf1:
    126. Domain for 4un2:
  5. 1637979Mouse (Mus musculus) [TaxId:10090] [190020] (5 PDB entries)
    1. Domains for 2znv:
      1. 1637984Domain d2znvc_: 2znv C: [154708]
        Other proteins in same PDB: d2znvb_, d2znve_
        automated match to d1aara_
        complexed with edo, zn
      2. 1637985Domain d2znvf_: 2znv F: [154710]
        Other proteins in same PDB: d2znvb_, d2znve_
        automated match to d1aara_
        complexed with edo, zn
    2. Domains for 3a1q:
      1. 1637986Domain d3a1qa_: 3a1q A: [171640]
        automated match to d1aara_
      2. 1637987Domain d3a1qb_: 3a1q B: [171641]
        automated match to d1aara_
      3. 1637988Domain d3a1qd_: 3a1q D: [171642]
        automated match to d1aara_
      4. 1637989Domain d3a1qe_: 3a1q E: [171643]
        automated match to d1aara_
    3. Domains for 3a9j:
      1. 1637980Domain d3a9ja_: 3a9j A: [171886]
        automated match to d1aara_
        complexed with zn
      2. 1637981Domain d3a9jb_: 3a9j B: [171887]
        automated match to d1aara_
        complexed with zn
    4. Domains for 3a9k:
      1. 1637982Domain d3a9ka_: 3a9k A: [171888]
        automated match to d1aara_
        complexed with zn
      2. 1637983Domain d3a9kb_: 3a9k B: [171889]
        automated match to d1aara_
        complexed with zn
    5. Domain for 3vht:
  6. 1637991Norway rat (Rattus norvegicus) [TaxId:10116] [224920] (1 PDB entry)
  7. 1637993Synthetic, based on Saccharomyces cerevisiae sequence [54240] (1 PDB entry)

More info for Protein Ubiquitin from d.15.1.1: Ubiquitin-related

Timeline for Protein Ubiquitin from d.15.1.1: Ubiquitin-related: