SCOPe 2.03: Protein: Ubiquitin

Lineage for Protein: Ubiquitin

Root: SCOPe 2.03
Class d: Alpha and beta proteins (a+b) [53931] (376 folds)
Fold d.15: beta-Grasp (ubiquitin-like) [54235] (14 superfamilies)
core: beta(2)-alpha-beta(2); mixed beta-sheet 2143
Superfamily d.15.1: Ubiquitin-like [54236] (9 families)
Family d.15.1.1: Ubiquitin-related [54237] (39 proteins)
Pfam PF00240
Protein Ubiquitin [54238] (7 species)

Species:

African clawed frog (Xenopus laevis) [TaxId:8355] [224918] (1 PDB entry)
- Domain for 2k39:
  - Domain d2k39a1: 2k39 A:1-73 [148263]
    automatically matched to d1aara_
Baker's yeast (Saccharomyces cerevisiae), smt3 [TaxId:4932] [89830] (7 PDB entries)
1. Domain for 1otr:
  - Domain d1otrb_: 1otr B: [87414]
    Other proteins in same PDB: d1otra_
2. Domain for 1q0w:
  - Domain d1q0wb_: 1q0w B: [95516]
    Other proteins in same PDB: d1q0wa_
3. Domain for 1wr1:
  - Domain d1wr1a1: 1wr1 A:1-76 [121184]
    Other proteins in same PDB: d1wr1b1
    automatically matched to d1otrb_
4. Domain for 2g3q:
  - Domain d2g3qb1: 2g3q B:1-76 [134569]
    Other proteins in same PDB: d2g3qa1
    automatically matched to d1otrb_
5. Domain for 2jt4:
  - Domain d2jt4b1: 2jt4 B:1-76 [148198]
    automatically matched to d1otrb_
    protein/DNA complex
6. Domain for 2jwz:
  - Domain d2jwza1: 2jwz A:1-71 [148232]
    automatically matched to d1yiwa1
    mutant
7. Domains for 3cmm:
  1. Domain d3cmmb_: 3cmm B: [156833]
    automated match to d1otrb_
    protein/DNA complex; complexed with pro
  2. Domain d3cmmd_: 3cmm D: [156834]
    automated match to d1otrb_
    protein/DNA complex; complexed with pro
Cow (Bos taurus) [TaxId:9913] [224919] (26 PDB entries)
1. Domains for 1aar:
  1. Domain d1aara_: 1aar A: [37586]
    di-ubiquitin
  2. Domain d1aarb_: 1aar B: [37587]
    di-ubiquitin
2. Domains for 1p3q:
  1. Domain d1p3qu_: 1p3q U: [87750]
    Other proteins in same PDB: d1p3qq_, d1p3qr_
    annotated as bovine in PDB, identical to human sequence
  2. Domain d1p3qv_: 1p3q V: [87751]
    Other proteins in same PDB: d1p3qq_, d1p3qr_
    annotated as bovine in PDB, identical to human sequence
3. Domain for 1uzx:
  - Domain d1uzxb_: 1uzx B: [100239]
    Other proteins in same PDB: d1uzxa_
    annotated as bovine in PDB, identical to human sequence
    complexed with mes, so4
4. Domain for 1v80:
  - Domain d1v80a1: 1v80 A:1-76 [119867]
    automatically matched to d1aara_
5. Domain for 1v81:
  - Domain d1v81a1: 1v81 A:1-76 [119868]
    automatically matched to d1aara_
6. Domains for 1wr6:
  1. Domain d1wr6e_: 1wr6 E: [121186]
    Other proteins in same PDB: d1wr6a1, d1wr6b_, d1wr6c_, d1wr6d_
    automated match to d1aara_
  2. Domain d1wr6f_: 1wr6 F: [121187]
    Other proteins in same PDB: d1wr6a1, d1wr6b_, d1wr6c_, d1wr6d_
    automated match to d1aara_
  3. Domain d1wr6g_: 1wr6 G: [121188]
    Other proteins in same PDB: d1wr6a1, d1wr6b_, d1wr6c_, d1wr6d_
    automated match to d1aara_
  4. Domain d1wr6h_: 1wr6 H: [121189]
    Other proteins in same PDB: d1wr6a1, d1wr6b_, d1wr6c_, d1wr6d_
    automated match to d1aara_
7. Domain for 1wrd:
  - Domain d1wrdb_: 1wrd B: [121194]
    Other proteins in same PDB: d1wrda1
    automated match to d1aara_
8. Domains for 1yd8:
  1. Domain d1yd8u_: 1yd8 U: [122974]
    Other proteins in same PDB: d1yd8g1, d1yd8h_
    automated match to d1aara_
  2. Domain d1yd8v_: 1yd8 V: [122975]
    Other proteins in same PDB: d1yd8g1, d1yd8h_
    automated match to d1aara_
9. Domain for 2c7m:
  - Domain d2c7mb_: 2c7m B: [130068]
    Other proteins in same PDB: d2c7ma1
    automated match to d1aara_
    complexed with zn
10. Domains for 2c7n:
  1. Domain d2c7nb1: 2c7n B:1-74 [130070]
    Other proteins in same PDB: d2c7na1, d2c7nc1, d2c7ng1, d2c7ni1
    automatically matched to d1aara_
    complexed with zn
  2. Domain d2c7nd1: 2c7n D:1-74 [130072]
    Other proteins in same PDB: d2c7na1, d2c7nc1, d2c7ng1, d2c7ni1
    automatically matched to d1aara_
    complexed with zn
  3. Domain d2c7nf1: 2c7n F:1-74 [130073]
    Other proteins in same PDB: d2c7na1, d2c7nc1, d2c7ng1, d2c7ni1
    automatically matched to d1aara_
    complexed with zn
  4. Domain d2c7nh1: 2c7n H:1-73 [130075]
    Other proteins in same PDB: d2c7na1, d2c7nc1, d2c7ng1, d2c7ni1
    automatically matched to d1aara_
    complexed with zn
  5. Domain d2c7nj1: 2c7n J:1-72 [130077]
    Other proteins in same PDB: d2c7na1, d2c7nc1, d2c7ng1, d2c7ni1
    automatically matched to d1aara_
    complexed with zn
  6. Domain d2c7nl1: 2c7n L:1-74 [130078]
    Other proteins in same PDB: d2c7na1, d2c7nc1, d2c7ng1, d2c7ni1
    automatically matched to d1aara_
    complexed with zn
11. Domains for 2d3g:
  1. Domain d2d3ga_: 2d3g A: [131206]
    automated match to d1aara_
  2. Domain d2d3gb_: 2d3g B: [131207]
    automated match to d1aara_
12. Domain for 2dx5:
  - Domain d2dx5b1: 2dx5 B:1-73 [131867]
    Other proteins in same PDB: d2dx5a1
    automatically matched to d1aara_
13. Domain for 2fid:
  - Domain d2fida_: 2fid A: [133516]
    Other proteins in same PDB: d2fidb1
    automated match to d1aara_
    complexed with zn
14. Domains for 2fif:
  1. Domain d2fifa_: 2fif A: [133518]
    Other proteins in same PDB: d2fifb_, d2fifd_, d2fiff_
    automated match to d1aara_
    complexed with so4, zn
  2. Domain d2fifc_: 2fif C: [133520]
    Other proteins in same PDB: d2fifb_, d2fifd_, d2fiff_
    automated match to d1aara_
    complexed with so4, zn
  3. Domain d2fife_: 2fif E: [133522]
    Other proteins in same PDB: d2fifb_, d2fifd_, d2fiff_
    automated match to d1aara_
    complexed with so4, zn
15. Domain for 2hd5:
  - Domain d2hd5b_: 2hd5 B: [136341]
    Other proteins in same PDB: d2hd5a1
    automated match to d1aara_
    complexed with zn
16. Domain for 2oob:
  - Domain d2oobb_: 2oob B: [139167]
    automated match to d1aara_
17. Domains for 2qho:
  1. Domain d2qhoa_: 2qho A: [150790]
    automated match to d1aara_
  2. Domain d2qhoc_: 2qho C: [150791]
    automated match to d1aara_
  3. Domain d2qhoe_: 2qho E: [150792]
    automated match to d1aara_
  4. Domain d2qhog_: 2qho G: [150793]
    automated match to d1aara_
18. Domains for 2wwz:
  1. Domain d2wwza_: 2wwz A: [169677]
    automated match to d1aara_
    complexed with zn
  2. Domain d2wwzb_: 2wwz B: [169678]
    automated match to d1aara_
    complexed with zn
19. Domains for 2xbb:
  1. Domain d2xbbc_: 2xbb C: [169990]
    Other proteins in same PDB: d2xbba_, d2xbbb_
    automated match to d1aara_
    complexed with gol
  2. Domain d2xbbd_: 2xbb D: [169991]
    Other proteins in same PDB: d2xbba_, d2xbbb_
    automated match to d1aara_
    complexed with gol
20. Domains for 2zcc:
  1. Domain d2zcca_: 2zcc A: [154337]
    automated match to d1aara_
    complexed with zn
  2. Domain d2zccb_: 2zcc B: [154338]
    automated match to d1aara_
    complexed with zn
  3. Domain d2zccc_: 2zcc C: [154339]
    automated match to d1aara_
    complexed with zn
21. Domains for 3ldz:
  1. Domain d3ldze_: 3ldz E: [180204]
    Other proteins in same PDB: d3ldza_, d3ldzb_, d3ldzc_, d3ldzd_
    automated match to d1p3qu_
  2. Domain d3ldzf_: 3ldz F: [180205]
    Other proteins in same PDB: d3ldza_, d3ldzb_, d3ldzc_, d3ldzd_
    automated match to d1p3qu_
  3. Domain d3ldzg_: 3ldz G: [180206]
    Other proteins in same PDB: d3ldza_, d3ldzb_, d3ldzc_, d3ldzd_
    automated match to d1p3qu_
22. Domains for 3m3j:
  1. Domain d3m3ja_: 3m3j A: [180788]
    automated match to d1aara_
    complexed with edo, so4
  2. Domain d3m3jb_: 3m3j B: [180789]
    automated match to d1aara_
    complexed with edo, so4
  3. Domain d3m3jc_: 3m3j C: [180790]
    automated match to d1aara_
    complexed with edo, so4
  4. Domain d3m3jd_: 3m3j D: [180791]
    automated match to d1aara_
    complexed with edo, so4
  5. Domain d3m3je_: 3m3j E: [180792]
    automated match to d1aara_
    complexed with edo, so4
  6. Domain d3m3jf_: 3m3j F: [180793]
    automated match to d1aara_
    complexed with edo, so4
23. Domain for 4bbn:
  - Domain d4bbnc_: 4bbn C: [197080]
    Other proteins in same PDB: d4bbna_, d4bbnf_
    automated match to d3nheb_
24. Domain for 4ljo:
  - Domain d4ljob_: 4ljo B: [228379]
    automated match to d1ogwa_
    complexed with imd, zn
25. Domain for 4ljp:
  - Domain d4ljpb_: 4ljp B: [228378]
    automated match to d1ogwa_
    complexed with zn
26. Domain for 4m0w:
  - Domain d4m0wb_: 4m0w B: [236781]
    automated match to d1ogwa_
    complexed with gol, na, nhe, zn; mutant
Human (Homo sapiens) [TaxId:9606] [54239] (99 PDB entries)
Uniprot P62988
identical sequence in many other species
1. Domain for 1c3t:
  - Domain d1c3ta_: 1c3t A: [37594]
    designed hydrophobic core mutant
2. Domain for 1d3z:
  - Domain d1d3za_: 1d3z A: [37592]
3. Domains for 1f9j:
  1. Domain d1f9ja_: 1f9j A: [37590]
    a new crystal form of tetraubiquitin
  2. Domain d1f9jb_: 1f9j B: [37591]
    a new crystal form of tetraubiquitin
4. Domain for 1fxt:
  - Domain d1fxtb_: 1fxt B: [65056]
    Other proteins in same PDB: d1fxta_
5. Domain for 1g6j:
  - Domain d1g6ja_: 1g6j A: [60319]
    Structure in aot reverse micelles
6. Domains for 1gjz:
  1. Domain d1gjza_: 1gjz A: [65223]
  2. Domain d1gjzb_: 1gjz B: [65224]
7. Domains for 1nbf:
  1. Domain d1nbfc_: 1nbf C: [80389]
    Other proteins in same PDB: d1nbfa_, d1nbfb_, d1nbfe_
    complex with USP7
  2. Domain d1nbfd_: 1nbf D: [80390]
    Other proteins in same PDB: d1nbfa_, d1nbfb_, d1nbfe_
    complex with USP7
8. Domain for 1ogw:
  - Domain d1ogwa_: 1ogw A: [87001]
    synthetic protein with fluoro-Leu at 50 and 67
9. Domain for 1q5w:
  - Domain d1q5wb_: 1q5w B: [95946]
    Other proteins in same PDB: d1q5wa_
    complexed with zn
10. Domains for 1s1q:
  1. Domain d1s1qb_: 1s1q B: [98352]
    Other proteins in same PDB: d1s1qa_, d1s1qc_
    complexed with acy, cu, so4
  2. Domain d1s1qd_: 1s1q D: [98354]
    Other proteins in same PDB: d1s1qa_, d1s1qc_
    complexed with acy, cu, so4
11. Domain for 1sif:
  - Domain d1sifa_: 1sif A: [105574]
    a multiple hydrophobic core mutant
    mutant
12. Domains for 1tbe:
  1. Domain d1tbea_: 1tbe A: [37588]
    tetra-ubiquitin
  2. Domain d1tbeb_: 1tbe B: [37589]
    tetra-ubiquitin
13. Domain for 1ubi:
  - Domain d1ubia_: 1ubi A: [37584]
14. Domain for 1ubq:
  - Domain d1ubqa_: 1ubq A: [37585]
15. Domain for 1ud7:
  - Domain d1ud7a_: 1ud7 A: [37593]
    designed hydrophobic core mutant
    mutant
16. Domains for 1xd3:
  1. Domain d1xd3b_: 1xd3 B: [115146]
    Other proteins in same PDB: d1xd3a_, d1xd3c_
    complexed with gve, mg
  2. Domain d1xd3d_: 1xd3 D: [115148]
    Other proteins in same PDB: d1xd3a_, d1xd3c_
    complexed with gve, mg
17. Domain for 1xqq:
  - Domain d1xqqa1: 1xqq A:1-76 [122240]
    automatically matched to d1aara_
18. Domain for 1yx5:
  - Domain d1yx5b1: 1yx5 B:1-76 [124172]
    automatically matched to d1aara_
19. Domain for 1yx6:
  - Domain d1yx6b1: 1yx6 B:1-76 [124173]
    automatically matched to d1aara_
20. Domain for 1zgu:
  - Domain d1zgub1: 1zgu B:1-76 [125062]
    Other proteins in same PDB: d1zgua1
21. Domain for 2ayo:
  - Domain d2ayob1: 2ayo B:1-76 [127567]
    Other proteins in same PDB: d2ayoa1
    automatically matched to d1aara_
22. Domains for 2bgf:
  1. Domain d2bgfa1: 2bgf A:1-76 [128476]
    automatically matched to d1aara_
  2. Domain d2bgfb1: 2bgf B:1-76 [128477]
    automatically matched to d1aara_
23. Domain for 2den:
  - Domain d2denb1: 2den B:1-76 [131432]
    automatically matched to d1aara_
24. Domains for 2g45:
  1. Domain d2g45b_: 2g45 B: [134578]
    Other proteins in same PDB: d2g45a_, d2g45d_
    automated match to d1aara_
    complexed with cl, zn
  2. Domain d2g45e_: 2g45 E: [134579]
    Other proteins in same PDB: d2g45a_, d2g45d_
    automated match to d1aara_
    complexed with cl, zn
25. Domain for 2gmi:
  - Domain d2gmic_: 2gmi C: [135382]
    Other proteins in same PDB: d2gmia1, d2gmib_
    automated match to d1aara_
26. Domain for 2hth:
  - Domain d2htha_: 2hth A: [136742]
    Other proteins in same PDB: d2hthb1
    automated match to d1aara_
27. Domain for 2ibi:
  - Domain d2ibib_: 2ibi B: [137194]
    Other proteins in same PDB: d2ibia1
    automated match to d1aara_
    complexed with neh, zn
28. Domains for 2j7q:
  1. Domain d2j7qb_: 2j7q B: [138127]
    Other proteins in same PDB: d2j7qa1, d2j7qc1
    automated match to d1aara_
    complexed with gol, gve, mg, pg4
  2. Domain d2j7qd_: 2j7q D: [138128]
    Other proteins in same PDB: d2j7qa1, d2j7qc1
    automated match to d1aara_
    complexed with gol, gve, mg, pg4
29. Domains for 2jf5:
  1. Domain d2jf5a_: 2jf5 A: [148030]
    automated match to d1aara_
    complexed with cd, cl, co, mg
  2. Domain d2jf5b_: 2jf5 B: [148031]
    automated match to d1aara_
    complexed with cd, cl, co, mg
30. Domains for 2jri:
  1. Domain d2jrib1: 2jri B:183-255 [148185]
    automatically matched to d1aara_
  2. Domain d2jric1: 2jri C:259-331 [148186]
    automatically matched to d1aara_
31. Domain for 2jy6:
  - Domain d2jy6a1: 2jy6 A:1-73 [148238]
    automatically matched to d1aara_
32. Domain for 2jzz:
  - Domain d2jzza1: 2jzz A:1-73 [148251]
    automatically matched to d1aara_
33. Domain for 2k6d:
  - Domain d2k6db1: 2k6d B:1-73 [148276]
    automatically matched to d1aara_
34. Domain for 2nr2:
  - Domain d2nr2a1: 2nr2 A:1-76 [138518]
    automatically matched to d1aara_
35. Domains for 2o6v:
  1. Domain d2o6va_: 2o6v A: [138922]
    Other proteins in same PDB: d2o6vb_, d2o6vf_
    automated match to d1aara_
    complexed with mes, so4
  2. Domain d2o6vc_: 2o6v C: [138924]
    Other proteins in same PDB: d2o6vb_, d2o6vf_
    automated match to d1aara_
    complexed with mes, so4
  3. Domain d2o6vd1: 2o6v D:301-376 [145715]
    Other proteins in same PDB: d2o6vb_, d2o6vf_
    complexed with mes, so4
  4. Domain d2o6ve_: 2o6v E: [138925]
    Other proteins in same PDB: d2o6vb_, d2o6vf_
    automated match to d1aara_
    complexed with mes, so4
  5. Domain d2o6vg_: 2o6v G: [138927]
    Other proteins in same PDB: d2o6vb_, d2o6vf_
    automated match to d1aara_
    complexed with mes, so4
  6. Domain d2o6vh_: 2o6v H: [145716]
    Other proteins in same PDB: d2o6vb_, d2o6vf_
    automated match to d2o6vd1
    complexed with mes, so4
36. Domains for 2pe9:
  1. Domain d2pe9a1: 2pe9 A:1-72 [149399]
    automatically matched to d1aara_
  2. Domain d2pe9b1: 2pe9 B:1-72 [149400]
    automatically matched to d1aara_
37. Domains for 2pea:
  1. Domain d2peaa1: 2pea A:1-72 [149401]
    automatically matched to d1aara_
  2. Domain d2peab1: 2pea B:1-72 [149402]
    automatically matched to d1aara_
38. Domains for 2wdt:
  1. Domain d2wdtb_: 2wdt B: [169256]
    Other proteins in same PDB: d2wdta_, d2wdtc_
    automated match to d1uzxb_
    complexed with cl
  2. Domain d2wdtd_: 2wdt D: [169258]
    Other proteins in same PDB: d2wdta_, d2wdtc_
    automated match to d1uzxb_
    complexed with cl
39. Domains for 2xew:
  1. Domain d2xewa_: 2xew A: [170063]
    automated match to d1aara_
    complexed with cl, edo, flc
  2. Domain d2xewb_: 2xew B: [170064]
    automated match to d1aara_
    complexed with cl, edo, flc
  3. Domain d2xewc_: 2xew C: [170065]
    automated match to d1aara_
    complexed with cl, edo, flc
  4. Domain d2xewd_: 2xew D: [170066]
    automated match to d1aara_
    complexed with cl, edo, flc
  5. Domain d2xewe_: 2xew E: [170067]
    automated match to d1aara_
    complexed with cl, edo, flc
  6. Domain d2xewf_: 2xew F: [170068]
    automated match to d1aara_
    complexed with cl, edo, flc
  7. Domain d2xewg_: 2xew G: [170069]
    automated match to d1aara_
    complexed with cl, edo, flc
  8. Domain d2xewh_: 2xew H: [170070]
    automated match to d1aara_
    complexed with cl, edo, flc
  9. Domain d2xewi_: 2xew I: [170071]
    automated match to d1aara_
    complexed with cl, edo, flc
  10. Domain d2xewj_: 2xew J: [170072]
    automated match to d1aara_
    complexed with cl, edo, flc
  11. Domain d2xewk_: 2xew K: [170073]
    automated match to d1aara_
    complexed with cl, edo, flc
  12. Domain d2xewl_: 2xew L: [170074]
    automated match to d1aara_
    complexed with cl, edo, flc
40. Domain for 2z59:
  - Domain d2z59b1: 2z59 B:1-73 [154162]
    automatically matched to d1aara_
41. Domain for 3a33:
  - Domain d3a33b_: 3a33 B: [171694]
    Other proteins in same PDB: d3a33a_
    automated match to d1aara_
    complexed with gol
42. Domains for 3alb:
  1. Domain d3alba_: 3alb A: [172232]
    automated match to d1aara_
    complexed with so4
  2. Domain d3albb_: 3alb B: [172233]
    automated match to d1aara_
    complexed with so4
  3. Domain d3albc_: 3alb C: [172234]
    automated match to d1aara_
    complexed with so4
  4. Domain d3albd_: 3alb D: [172235]
    automated match to d1aara_
    complexed with so4
43. Domains for 3aul:
  1. Domain d3aula_: 3aul A: [172342]
    automated match to d1aara_
  2. Domain d3aulb_: 3aul B: [172343]
    automated match to d1aara_
44. Domain for 3by4:
  - Domain d3by4b_: 3by4 B: [155720]
    automated match to d1uzxb_
    complexed with 3cn
45. Domains for 3c0r:
  1. Domain d3c0rb_: 3c0r B: [155839]
    automated match to d1uzxb_
    complexed with 3cn
  2. Domain d3c0rd_: 3c0r D: [155840]
    automated match to d1uzxb_
    complexed with 3cn
46. Domains for 3dvg:
  1. Domain d3dvgx_: 3dvg X: [157892]
    Other proteins in same PDB: d3dvga1, d3dvga2, d3dvgb1, d3dvgb2
    automated match to d1aara_
  2. Domain d3dvgy_: 3dvg Y: [157893]
    Other proteins in same PDB: d3dvga1, d3dvga2, d3dvgb1, d3dvgb2
    automated match to d1aara_
47. Domains for 3dvn:
  1. Domain d3dvnu_: 3dvn U: [157902]
    Other proteins in same PDB: d3dvna1, d3dvna2, d3dvnb1, d3dvnb2, d3dvnh1, d3dvnh2, d3dvnl1, d3dvnl2
    automated match to d1aara_
  2. Domain d3dvnv_: 3dvn V: [157903]
    Other proteins in same PDB: d3dvna1, d3dvna2, d3dvnb1, d3dvnb2, d3dvnh1, d3dvnh2, d3dvnl1, d3dvnl2
    automated match to d1aara_
  3. Domain d3dvnx_: 3dvn X: [157904]
    Other proteins in same PDB: d3dvna1, d3dvna2, d3dvnb1, d3dvnb2, d3dvnh1, d3dvnh2, d3dvnl1, d3dvnl2
    automated match to d1aara_
  4. Domain d3dvny_: 3dvn Y: [157905]
    Other proteins in same PDB: d3dvna1, d3dvna2, d3dvnb1, d3dvnb2, d3dvnh1, d3dvnh2, d3dvnl1, d3dvnl2
    automated match to d1aara_
48. Domain for 3efu:
  - Domain d3efua_: 3efu A: [174918]
    automated match to d1aara_
    complexed with hg
49. Domains for 3ehv:
  1. Domain d3ehva_: 3ehv A: [174939]
    automated match to d1aara_
    complexed with zn
  2. Domain d3ehvb_: 3ehv B: [174940]
    automated match to d1aara_
    complexed with zn
  3. Domain d3ehvc_: 3ehv C: [174941]
    automated match to d1aara_
    complexed with zn
50. Domains for 3h7p:
  1. Domain d3h7pa_: 3h7p A: [177310]
    automated match to d1aara_
    complexed with cd
  2. Domain d3h7pb_: 3h7p B: [177311]
    automated match to d1aara_
    complexed with cd
51. Domains for 3h7s:
  1. Domain d3h7sa_: 3h7s A: [177312]
    automated match to d1aara_
    complexed with zn
  2. Domain d3h7sb_: 3h7s B: [177313]
    automated match to d1aara_
    complexed with zn
52. Domains for 3hm3:
  1. Domain d3hm3a_: 3hm3 A: [177688]
    automated match to d1aara_
    complexed with zn
  2. Domain d3hm3b_: 3hm3 B: [177689]
    automated match to d1aara_
    complexed with zn
  3. Domain d3hm3c_: 3hm3 C: [177690]
    automated match to d1aara_
    complexed with zn
  4. Domain d3hm3d_: 3hm3 D: [177691]
    automated match to d1aara_
    complexed with zn
53. Domains for 3i3t:
  1. Domain d3i3tb_: 3i3t B: [178067]
    Other proteins in same PDB: d3i3ta_, d3i3tc_, d3i3te_, d3i3tg_
    automated match to d1uzxb_
    complexed with neh, zn
  2. Domain d3i3td_: 3i3t D: [178069]
    Other proteins in same PDB: d3i3ta_, d3i3tc_, d3i3te_, d3i3tg_
    automated match to d1uzxb_
    complexed with neh, zn
  3. Domain d3i3tf_: 3i3t F: [178071]
    Other proteins in same PDB: d3i3ta_, d3i3tc_, d3i3te_, d3i3tg_
    automated match to d1uzxb_
    complexed with neh, zn
  4. Domain d3i3th_: 3i3t H: [178073]
    Other proteins in same PDB: d3i3ta_, d3i3tc_, d3i3te_, d3i3tg_
    automated match to d1uzxb_
    complexed with neh, zn
54. Domain for 3ifw:
  - Domain d3ifwb_: 3ifw B: [178303]
    Other proteins in same PDB: d3ifwa_
    automated match to d1uzxb_
    complexed with gve
55. Domains for 3ihp:
  1. Domain d3ihpc_: 3ihp C: [178324]
    automated match to d1uzxb_
    complexed with cl, neh, zn
  2. Domain d3ihpd_: 3ihp D: [178325]
    automated match to d1uzxb_
    complexed with cl, neh, zn
56. Domain for 3jsv:
  - Domain d3jsvb_: 3jsv B: [178794]
    Other proteins in same PDB: d3jsva_
    automated match to d1aara_
57. Domain for 3k9o:
  - Domain d3k9ob_: 3k9o B: [212243]
    Other proteins in same PDB: d3k9oa1, d3k9oa2
    automated match to d4ap4f_
58. Domain for 3kvf:
  - Domain d3kvfb_: 3kvf B: [179736]
    Other proteins in same PDB: d3kvfa_
    automated match to d1uzxb_
    complexed with gve; mutant
59. Domain for 3kw5:
  - Domain d3kw5b_: 3kw5 B: [179748]
    Other proteins in same PDB: d3kw5a_
    automated match to d1uzxb_
    complexed with gve
60. Domain for 3mhs:
  - Domain d3mhsd_: 3mhs D: [181231]
    automated match to d1aara_
    complexed with edo, gol, zn
61. Domains for 3mtn:
  1. Domain d3mtnb_: 3mtn B: [181547]
    Other proteins in same PDB: d3mtna_, d3mtnc_
    automated match to d1p3qu_
    complexed with cl, gol, zn
  2. Domain d3mtnd_: 3mtn D: [181549]
    Other proteins in same PDB: d3mtna_, d3mtnc_
    automated match to d1p3qu_
    complexed with cl, gol, zn
62. Domain for 3n32:
  - Domain d3n32a_: 3n32 A: [181862]
    automated match to d1aara_
    complexed with pt
63. Domain for 3n3k:
  - Domain d3n3kb_: 3n3k B: [181875]
    Other proteins in same PDB: d3n3ka_
    automated match to d2zcca1
    complexed with zn
64. Domain for 3nhe:
  - Domain d3nheb_: 3nhe B: [182288]
    Other proteins in same PDB: d3nhea_
    automated match to d1aara_
    complexed with zn
65. Domains for 3ns8:
  1. Domain d3ns8a_: 3ns8 A: [214037]
    automated match to d1ogwa_
    complexed with epe, gol
  2. Domain d3ns8b_: 3ns8 B: [214038]
    automated match to d1ogwa_
    complexed with epe, gol
66. Domains for 3o65:
  1. Domain d3o65b_: 3o65 B: [182825]
    automated match to d1uzxb_
    complexed with na
  2. Domain d3o65d_: 3o65 D: [182826]
    automated match to d1uzxb_
    complexed with na
  3. Domain d3o65f_: 3o65 F: [182827]
    automated match to d1uzxb_
    complexed with na
  4. Domain d3o65h_: 3o65 H: [182828]
    automated match to d1uzxb_
    complexed with na
67. Domains for 3ofi:
  1. Domain d3ofic_: 3ofi C: [182991]
    automated match to d1aara_
    complexed with dio, zn
  2. Domain d3ofid_: 3ofi D: [182992]
    automated match to d1aara_
    complexed with dio, zn
68. Domains for 3oj3:
  1. Domain d3oj3a_: 3oj3 A: [183060]
    automated match to d1aara_
    complexed with zn
  2. Domain d3oj3b_: 3oj3 B: [183061]
    automated match to d1aara_
    complexed with zn
  3. Domain d3oj3c_: 3oj3 C: [183062]
    automated match to d1aara_
    complexed with zn
  4. Domain d3oj3d_: 3oj3 D: [183063]
    automated match to d1aara_
    complexed with zn
  5. Domain d3oj3e_: 3oj3 E: [183064]
    automated match to d1aara_
    complexed with zn
  6. Domain d3oj3f_: 3oj3 F: [183065]
    automated match to d1aara_
    complexed with zn
  7. Domain d3oj3g_: 3oj3 G: [183066]
    automated match to d1aara_
    complexed with zn
  8. Domain d3oj3h_: 3oj3 H: [183067]
    automated match to d1aara_
    complexed with zn
69. Domain for 3ons:
  - Domain d3onsa_: 3ons A: [183194]
    automated match to d1f9jb_
70. Domains for 3phw:
  1. Domain d3phwb_: 3phw B: [183745]
    automated match to d1uzxb_
    complexed with neh
  2. Domain d3phwd_: 3phw D: [183746]
    automated match to d1uzxb_
    complexed with neh
  3. Domain d3phwf_: 3phw F: [183747]
    automated match to d1uzxb_
    complexed with neh
  4. Domain d3phwh_: 3phw H: [183748]
    automated match to d1uzxb_
    complexed with neh
71. Domains for 3prm:
  1. Domain d3prmb_: 3prm B: [183934]
    automated match to d1uzxb_
    complexed with 3cn
  2. Domain d3prmd_: 3prm D: [183935]
    automated match to d1uzxb_
    complexed with 3cn
72. Domains for 3prp:
  1. Domain d3prpb_: 3prp B: [183936]
    automated match to d1uzxb_
    complexed with 3cn
  2. Domain d3prpd_: 3prp D: [183937]
    automated match to d1uzxb_
    complexed with 3cn
73. Domain for 3pt2:
  - Domain d3pt2b_: 3pt2 B: [183965]
    automated match to d1uzxb_
    complexed with 3cn, act, so4
74. Domains for 3ptf:
  1. Domain d3ptfc_: 3ptf C: [183970]
    Other proteins in same PDB: d3ptfa_, d3ptfb_
    automated match to d1aara_
  2. Domain d3ptfd_: 3ptf D: [183971]
    Other proteins in same PDB: d3ptfa_, d3ptfb_
    automated match to d1aara_
75. Domains for 3rul:
  1. Domain d3rula_: 3rul A: [195221]
    automated match to d3noba_
    complexed with cl, m12, man, n1l, tla
  2. Domain d3rulb_: 3rul B: [195220]
    automated match to d3noba_
    complexed with cl, m12, man, n1l, tla
  3. Domain d3rulc_: 3rul C: [195219]
    automated match to d3noba_
    complexed with cl, m12, man, n1l, tla
  4. Domain d3ruld_: 3rul D: [200535]
    automated match to d3rulc_
    complexed with cl, m12, man, n1l, tla
76. Domains for 3tbl:
  1. Domain d3tbld_: 3tbl D: [216728]
    Other proteins in same PDB: d3tbla1, d3tbla2, d3tblb1, d3tblb2, d3tblc1, d3tblc2
    automated match to d1ogwa_
  2. Domain d3tble_: 3tbl E: [216729]
    Other proteins in same PDB: d3tbla1, d3tbla2, d3tblb1, d3tblb2, d3tblc1, d3tblc2
    automated match to d1ogwa_
77. Domains for 3tmp:
  1. Domain d3tmpb_: 3tmp B: [185879]
    automated match to d1aara_
  2. Domain d3tmpd_: 3tmp D: [185880]
    automated match to d1aara_
  3. Domain d3tmpf_: 3tmp F: [185881]
    automated match to d1aara_
  4. Domain d3tmph_: 3tmp H: [185882]
    automated match to d1aara_
78. Domain for 3ugb:
  - Domain d3ugbb_: 3ugb B: [200982]
    Other proteins in same PDB: d3ugba_
    automated match to d1ogwa_
    complexed with gol
79. Domain for 3v6c:
  - Domain d3v6cb_: 3v6c B: [194204]
    Other proteins in same PDB: d3v6ca_
    automated match to d2c7nb1
    complexed with cl, gol, zn
80. Domain for 3v6e:
  - Domain d3v6eb_: 3v6e B: [194202]
    Other proteins in same PDB: d3v6ea_
    automated match to d2c7nb1
    complexed with cl, gol, zn; mutant
81. Domains for 3vuw:
  1. Domain d3vuwa_: 3vuw A: [218106]
    automated match to d1ogwa_
    complexed with k, zn
  2. Domain d3vuwb_: 3vuw B: [218107]
    automated match to d1ogwa_
    complexed with k, zn
  3. Domain d3vuwc_: 3vuw C: [218108]
    automated match to d1ogwa_
    complexed with k, zn
82. Domains for 3vux:
  1. Domain d3vuxa_: 3vux A: [218109]
    automated match to d1ogwa_
    complexed with edo, k, zn
  2. Domain d3vuxb_: 3vux B: [218110]
    automated match to d1ogwa_
    complexed with edo, k, zn
  3. Domain d3vuxc_: 3vux C: [218111]
    automated match to d1ogwa_
    complexed with edo, k, zn
83. Domains for 3vuy:
  1. Domain d3vuya_: 3vuy A: [218112]
    automated match to d1ogwa_
    complexed with k, zn
  2. Domain d3vuyb_: 3vuy B: [218113]
    automated match to d1ogwa_
    complexed with k, zn
  3. Domain d3vuyc_: 3vuy C: [218114]
    automated match to d1ogwa_
    complexed with k, zn
84. Domains for 3zlz:
  1. Domain d3zlza_: 3zlz A: [201344]
    automated match to d1zgub1
    complexed with zn
  2. Domain d3zlzb_: 3zlz B: [193162]
    automated match to d1zgub1
    complexed with zn
85. Domains for 4bos:
  1. Domain d4bosc_: 4bos C: [219533]
    automated match to d1ogwa_
    complexed with mg, no3
  2. Domain d4bose_: 4bos E: [219534]
    automated match to d1ogwa_
    complexed with mg, no3
86. Domain for 4bvu:
  - Domain d4bvuc_: 4bvu C: [236293]
    Other proteins in same PDB: d4bvub_
    automated match to d1ogwa_
87. Domains for 4dhj:
  1. Domain d4dhjb_: 4dhj B: [201701]
    Other proteins in same PDB: d4dhjc_, d4dhjg_, d4dhjk_, d4dhjn_
    automated match to d1ogwa_
  2. Domain d4dhjd_: 4dhj D: [201703]
    Other proteins in same PDB: d4dhjc_, d4dhjg_, d4dhjk_, d4dhjn_
    automated match to d4bbnf_
  3. Domain d4dhjf_: 4dhj F: [201704]
    Other proteins in same PDB: d4dhjc_, d4dhjg_, d4dhjk_, d4dhjn_
    automated match to d1ogwa_
  4. Domain d4dhjh_: 4dhj H: [201706]
    Other proteins in same PDB: d4dhjc_, d4dhjg_, d4dhjk_, d4dhjn_
    automated match to d4bbnf_
  5. Domain d4dhjj_: 4dhj J: [201707]
    Other proteins in same PDB: d4dhjc_, d4dhjg_, d4dhjk_, d4dhjn_
    automated match to d1ogwa_
  6. Domain d4dhjm_: 4dhj M: [201708]
    Other proteins in same PDB: d4dhjc_, d4dhjg_, d4dhjk_, d4dhjn_
    automated match to d1ogwa_
88. Domains for 4fjv:
  1. Domain d4fjvb_: 4fjv B: [197304]
    Other proteins in same PDB: d4fjva_, d4fjvc_
    automated match to d3nobh_
    complexed with gol, neh
  2. Domain d4fjvd_: 4fjv D: [202038]
    Other proteins in same PDB: d4fjva_, d4fjvc_
    automated match to d4fjvb_
    complexed with gol, neh
89. Domains for 4hxd:
  1. Domain d4hxda_: 4hxd A: [196901]
    automated match to d3noba_
    complexed with 3cn, so4
  2. Domain d4hxdc_: 4hxd C: [202509]
    automated match to d1xd3b_
    complexed with 3cn, so4
90. Domain for 4i6l:
  - Domain d4i6lb_: 4i6l B: [194132]
    Other proteins in same PDB: d4i6la_
    automated match to d3noba_
91. Domains for 4i6n:
  1. Domain d4i6nb_: 4i6n B: [197189]
    Other proteins in same PDB: d4i6na_, d4i6nc_
    automated match to d3noba_
    complexed with dtt, gve, na
  2. Domain d4i6nd_: 4i6n D: [202578]
    Other proteins in same PDB: d4i6na_, d4i6nc_
    automated match to d1xd3b_
    complexed with dtt, gve, na
92. Domain for 4ig7:
  - Domain d4ig7b_: 4ig7 B: [223161]
    automated match to d1xd3b_
    complexed with gve
93. Domain for 4ium:
  - Domain d4iumb_: 4ium B: [196617]
    automated match to d3noba_
    complexed with gol, zn
94. Domain for 4jqw:
  - Domain d4jqwc_: 4jqw C: [237950]
    automated match to d1ogwa_
    complexed with po4
95. Domains for 4k7s:
  1. Domain d4k7sa_: 4k7s A: [224193]
    automated match to d1ogwa_
    complexed with act, edo, zn
  2. Domain d4k7sb_: 4k7s B: [224194]
    automated match to d1ogwa_
    complexed with act, edo, zn
  3. Domain d4k7sc_: 4k7s C: [224195]
    automated match to d1ogwa_
    complexed with act, edo, zn
96. Domains for 4k7u:
  1. Domain d4k7ua_: 4k7u A: [224196]
    automated match to d1ogwa_
    complexed with act, edo, peg, zn
  2. Domain d4k7ub_: 4k7u B: [224197]
    automated match to d1ogwa_
    complexed with act, edo, peg, zn
  3. Domain d4k7uc_: 4k7u C: [224198]
    automated match to d1ogwa_
    complexed with act, edo, peg, zn
97. Domains for 4k7w:
  1. Domain d4k7wa_: 4k7w A: [224199]
    automated match to d1ogwa_
    complexed with act, edo, zn
  2. Domain d4k7wb_: 4k7w B: [224200]
    automated match to d1ogwa_
    complexed with act, edo, zn
  3. Domain d4k7wc_: 4k7w C: [224201]
    automated match to d1ogwa_
    complexed with act, edo, zn
98. Domains for 4ksk:
  1. Domain d4kskc_: 4ksk C: [202875]
    automated match to d4ap4f_
    complexed with so4
  2. Domain d4kskd_: 4ksk D: [197271]
    automated match to d3nobh_
    complexed with so4
99. Domains for 4ldt:
  1. Domain d4ldtb_: 4ldt B: [227601]
    Other proteins in same PDB: d4ldtc_
    automated match to d1ogwa_
    complexed with edo, mg
  2. Domain d4ldtd_: 4ldt D: [227600]
    Other proteins in same PDB: d4ldtc_
    automated match to d1ogwa_
    complexed with edo, mg
Mouse (Mus musculus) [TaxId:10090] [190020] (5 PDB entries)
1. Domains for 2znv:
  1. Domain d2znvc_: 2znv C: [154708]
    Other proteins in same PDB: d2znvb_, d2znve_
    automated match to d1aara_
    complexed with edo, zn
  2. Domain d2znvf_: 2znv F: [154710]
    Other proteins in same PDB: d2znvb_, d2znve_
    automated match to d1aara_
    complexed with edo, zn
2. Domains for 3a1q:
  1. Domain d3a1qa_: 3a1q A: [171640]
    automated match to d1aara_
  2. Domain d3a1qb_: 3a1q B: [171641]
    automated match to d1aara_
  3. Domain d3a1qd_: 3a1q D: [171642]
    automated match to d1aara_
  4. Domain d3a1qe_: 3a1q E: [171643]
    automated match to d1aara_
3. Domains for 3a9j:
  1. Domain d3a9ja_: 3a9j A: [171886]
    automated match to d1aara_
    complexed with zn
  2. Domain d3a9jb_: 3a9j B: [171887]
    automated match to d1aara_
    complexed with zn
4. Domains for 3a9k:
  1. Domain d3a9ka_: 3a9k A: [171888]
    automated match to d1aara_
    complexed with zn
  2. Domain d3a9kb_: 3a9k B: [171889]
    automated match to d1aara_
    complexed with zn
5. Domain for 3vht:
  - Domain d3vhtc_: 3vht C: [201236]
    Other proteins in same PDB: d3vhta_
    automated match to d1ogwa_
    complexed with zn
Norway rat (Rattus norvegicus) [TaxId:10116] [224920] (1 PDB entry)
- Domain for 2fuh:
  - Domain d2fuhb1: 2fuh B:1-76 [134174]
    Other proteins in same PDB: d2fuha1
    automatically matched to d1aara_
Synthetic, based on Saccharomyces cerevisiae sequence [54240] (1 PDB entry)
- Domains for 1cmx:
  1. Domain d1cmxb_: 1cmx B: [37595]
    Other proteins in same PDB: d1cmxa_, d1cmxc_
    nearly completely disordered chain D in the crystal structure
  2. Domain d1cmxd_: 1cmx D: [37596]
    Other proteins in same PDB: d1cmxa_, d1cmxc_
    nearly completely disordered chain D in the crystal structure

More info for Protein Ubiquitin from d.15.1.1: Ubiquitin-related

Timeline for Protein Ubiquitin from d.15.1.1: Ubiquitin-related:

Protein Ubiquitin from d.15.1.1: Ubiquitin-related first appeared (with stable ids) in SCOP 1.55
Protein Ubiquitin from d.15.1.1: Ubiquitin-related appears in SCOPe 2.02
Protein Ubiquitin from d.15.1.1: Ubiquitin-related appears in SCOPe 2.04
Protein Ubiquitin from d.15.1.1: Ubiquitin-related appears in the current release, SCOPe 2.08