Lineage for Protein: Ubiquitin

  1. Root: SCOP 1.75
  2. 849709Class d: Alpha and beta proteins (a+b) [53931] (376 folds)
  3. 853596Fold d.15: beta-Grasp (ubiquitin-like) [54235] (14 superfamilies)
    core: beta(2)-alpha-beta(2); mixed beta-sheet 2143
  4. 853597Superfamily d.15.1: Ubiquitin-like [54236] (8 families) (S)
  5. 853598Family d.15.1.1: Ubiquitin-related [54237] (38 proteins)
    Pfam PF00240
  6. 853734Protein Ubiquitin [54238] (3 species)

Species:

  1. 853735Baker's yeast (Saccharomyces cerevisiae), smt3 [TaxId:4932] [89830] (6 PDB entries)
    1. Domain for 1otr:
    2. Domain for 1q0w:
    3. Domain for 1wr1:
    4. Domain for 2g3q:
    5. Domain for 2jt4:
    6. Domains for 3cmm:
      1. 853736Domain d3cmmb1: 3cmm B:1-76 [156833]
        automatically matched to d1otrb_
        complexed with pro
      2. 853737Domain d3cmmd1: 3cmm D:1-76 [156834]
        automatically matched to d1otrb_
        complexed with pro
  2. 853743Human (Homo sapiens) [TaxId:9606] [54239] (63 PDB entries)
    Uniprot P62988
    identical sequence in many other species
    1. Domains for 1aar:
      1. 853793Domain d1aara_: 1aar A: [37586]
        di-ubiquitin
      2. 853794Domain d1aarb_: 1aar B: [37587]
        di-ubiquitin
    2. Domain for 1c3t:
    3. Domain for 1d3z:
    4. Domains for 1f9j:
      1. 853810Domain d1f9ja_: 1f9j A: [37590]
        a new crystal form of tetraubiquitin
      2. 853811Domain d1f9jb_: 1f9j B: [37591]
        a new crystal form of tetraubiquitin
    5. Domain for 1fxt:
    6. Domain for 1g6j:
    7. Domains for 1gjz:
      1. 853827Domain d1gjza_: 1gjz A: [65223]
      2. 853828Domain d1gjzb_: 1gjz B: [65224]
    8. Domains for 1nbf:
      1. 853795Domain d1nbfc_: 1nbf C: [80389]
        Other proteins in same PDB: d1nbfa_, d1nbfb_, d1nbfe_
        complex with USP7
      2. 853796Domain d1nbfd_: 1nbf D: [80390]
        Other proteins in same PDB: d1nbfa_, d1nbfb_, d1nbfe_
        complex with USP7
        complexed with glz
    9. Domain for 1ogw:
      • 853744Domain d1ogwa_: 1ogw A: [87001]
        synthetic protein with fluoro-Leu at 50 and 67
        complexed with lef
    10. Domains for 1p3q:
      1. 853849Domain d1p3qu_: 1p3q U: [87750]
        Other proteins in same PDB: d1p3qq_, d1p3qr_
        annotated as bovine in PDB, identical to human sequence
      2. 853850Domain d1p3qv_: 1p3q V: [87751]
        Other proteins in same PDB: d1p3qq_, d1p3qr_
        annotated as bovine in PDB, identical to human sequence
        complexed with mse; mutant
    11. Domain for 1q5w:
    12. Domains for 1s1q:
      1. 853771Domain d1s1qb_: 1s1q B: [98352]
        Other proteins in same PDB: d1s1qa_, d1s1qc_
      2. 853772Domain d1s1qd_: 1s1q D: [98354]
        Other proteins in same PDB: d1s1qa_, d1s1qc_
        complexed with acy, cu, so4
    13. Domain for 1sif:
    14. Domains for 1tbe:
      1. 853812Domain d1tbea_: 1tbe A: [37588]
        tetra-ubiquitin
      2. 853813Domain d1tbeb_: 1tbe B: [37589]
        tetra-ubiquitin
    15. Domain for 1ubi:
    16. Domain for 1ubq:
    17. Domain for 1ud7:
    18. Domain for 1uzx:
      • 853764Domain d1uzxb_: 1uzx B: [100239]
        Other proteins in same PDB: d1uzxa_
        annotated as bovine in PDB, identical to human sequence
        complexed with mes, mso, so4
    19. Domain for 1v80:
    20. Domain for 1v81:
    21. Domains for 1wr6:
      1. 853800Domain d1wr6e1: 1wr6 E:1-72 [121186]
        Other proteins in same PDB: d1wr6a1, d1wr6b1, d1wr6c1, d1wr6d1
        automatically matched to d1aara_
      2. 853801Domain d1wr6f1: 1wr6 F:1-73 [121187]
        Other proteins in same PDB: d1wr6a1, d1wr6b1, d1wr6c1, d1wr6d1
        automatically matched to d1aara_
      3. 853802Domain d1wr6g1: 1wr6 G:1-72 [121188]
        Other proteins in same PDB: d1wr6a1, d1wr6b1, d1wr6c1, d1wr6d1
        automatically matched to d1aara_
      4. 853803Domain d1wr6h1: 1wr6 H:1-74 [121189]
        Other proteins in same PDB: d1wr6a1, d1wr6b1, d1wr6c1, d1wr6d1
        automatically matched to d1aara_
    22. Domain for 1wrd:
    23. Domains for 1xd3:
      1. 853745Domain d1xd3b_: 1xd3 B: [115146]
        Other proteins in same PDB: d1xd3a_, d1xd3c_
      2. 853746Domain d1xd3d_: 1xd3 D: [115148]
        Other proteins in same PDB: d1xd3a_, d1xd3c_
        complexed with gve, mg
    24. Domain for 1xqq:
    25. Domains for 1yd8:
      1. 853817Domain d1yd8u1: 1yd8 U:1-73 [122974]
        Other proteins in same PDB: d1yd8g1, d1yd8h1
        automatically matched to d1aara_
      2. 853818Domain d1yd8v1: 1yd8 V:1-73 [122975]
        Other proteins in same PDB: d1yd8g1, d1yd8h1
        automatically matched to d1aara_
    26. Domain for 1yx5:
    27. Domain for 1yx6:
    28. Domain for 1zgu:
    29. Domain for 2ayo:
    30. Domains for 2bgf:
      1. 853831Domain d2bgfa1: 2bgf A:1-76 [128476]
        automatically matched to d1aara_
      2. 853832Domain d2bgfb1: 2bgf B:1-76 [128477]
        automatically matched to d1aara_
    31. Domain for 2c7m:
    32. Domains for 2c7n:
      1. 853775Domain d2c7nb1: 2c7n B:1-74 [130070]
        Other proteins in same PDB: d2c7na1, d2c7nc1, d2c7ng1, d2c7ni1
        automatically matched to d1aara_
        complexed with zn
      2. 853776Domain d2c7nd1: 2c7n D:1-74 [130072]
        Other proteins in same PDB: d2c7na1, d2c7nc1, d2c7ng1, d2c7ni1
        automatically matched to d1aara_
        complexed with zn
      3. 853777Domain d2c7nf1: 2c7n F:1-74 [130073]
        Other proteins in same PDB: d2c7na1, d2c7nc1, d2c7ng1, d2c7ni1
        automatically matched to d1aara_
        complexed with zn
      4. 853778Domain d2c7nh1: 2c7n H:1-73 [130075]
        Other proteins in same PDB: d2c7na1, d2c7nc1, d2c7ng1, d2c7ni1
        automatically matched to d1aara_
        complexed with zn
      5. 853779Domain d2c7nj1: 2c7n J:1-72 [130077]
        Other proteins in same PDB: d2c7na1, d2c7nc1, d2c7ng1, d2c7ni1
        automatically matched to d1aara_
        complexed with zn
      6. 853780Domain d2c7nl1: 2c7n L:1-74 [130078]
        Other proteins in same PDB: d2c7na1, d2c7nc1, d2c7ng1, d2c7ni1
        automatically matched to d1aara_
        complexed with zn
    33. Domains for 2d3g:
      1. 853755Domain d2d3ga1: 2d3g A:1-72 [131206]
        automatically matched to d1aara_
      2. 853756Domain d2d3gb1: 2d3g B:1-72 [131207]
        automatically matched to d1aara_
    34. Domain for 2den:
    35. Domain for 2dx5:
    36. Domain for 2fid:
    37. Domains for 2fif:
      1. 853797Domain d2fifa1: 2fif A:1-73 [133518]
        Other proteins in same PDB: d2fifb1, d2fifd1, d2fiff1
        automatically matched to d1aara_
        complexed with so4, zn
      2. 853798Domain d2fifc1: 2fif C:1-73 [133520]
        Other proteins in same PDB: d2fifb1, d2fifd1, d2fiff1
        automatically matched to d1aara_
        complexed with so4, zn
      3. 853799Domain d2fife1: 2fif E:1-73 [133522]
        Other proteins in same PDB: d2fifb1, d2fifd1, d2fiff1
        automatically matched to d1aara_
        complexed with so4, zn
    38. Domain for 2fuh:
    39. Domains for 2g45:
      1. 853769Domain d2g45b1: 2g45 B:1-76 [134578]
        Other proteins in same PDB: d2g45a1, d2g45d1
        automatically matched to d1aara_
        complexed with cl, zn
      2. 853770Domain d2g45e1: 2g45 E:1-76 [134579]
        Other proteins in same PDB: d2g45a1, d2g45d1
        automatically matched to d1aara_
        complexed with cl, zn
    40. Domain for 2gmi:
    41. Domain for 2hd5:
    42. Domain for 2hth:
    43. Domain for 2ibi:
    44. Domains for 2j7q:
      1. 853757Domain d2j7qb1: 2j7q B:1-75 [138127]
        Other proteins in same PDB: d2j7qa1, d2j7qc1
        automatically matched to d1aara_
        complexed with gol, gve, mg, pg4
      2. 853758Domain d2j7qd1: 2j7q D:1-75 [138128]
        Other proteins in same PDB: d2j7qa1, d2j7qc1
        automatically matched to d1aara_
        complexed with gol, gve, mg, pg4
    45. Domains for 2jf5:
      1. 853773Domain d2jf5a1: 2jf5 A:1-73 [148030]
        automatically matched to d1aara_
        complexed with cd, cl, co, mg
      2. 853774Domain d2jf5b1: 2jf5 B:1-73 [148031]
        automatically matched to d1aara_
        complexed with cd, cl, co, mg
    46. Domains for 2jri:
      1. 853838Domain d2jrib1: 2jri B:183-255 [148185]
        automatically matched to d1aara_
      2. 853839Domain d2jric1: 2jri C:259-331 [148186]
        automatically matched to d1aara_
    47. Domain for 2jy6:
    48. Domain for 2jzz:
    49. Domain for 2k39:
    50. Domain for 2k6d:
    51. Domain for 2nr2:
    52. Domains for 2o6v:
      1. 853785Domain d2o6va1: 2o6v A:1-75 [138922]
        automatically matched to d1aara_
        complexed with mes, slz, so4; mutant
      2. 853786Domain d2o6vb1: 2o6v B:101-151 [138923]
        automatically matched to d1gjza_
        complexed with mes, slz, so4; mutant
      3. 853787Domain d2o6vc1: 2o6v C:201-276 [138924]
        automatically matched to d1aara_
        complexed with mes, slz, so4; mutant
      4. 853788Domain d2o6vd1: 2o6v D:301-376 [145715]
        complexed with mes, slz, so4; mutant
      5. 853789Domain d2o6ve1: 2o6v E:401-475 [138925]
        automatically matched to d1aara_
        complexed with mes, slz, so4; mutant
      6. 853790Domain d2o6vf1: 2o6v F:501-551 [138926]
        automatically matched to d1gjza_
        complexed with mes, slz, so4; mutant
      7. 853791Domain d2o6vg1: 2o6v G:601-676 [138927]
        automatically matched to d1aara_
        complexed with mes, slz, so4; mutant
      8. 853792Domain d2o6vh1: 2o6v H:702-776 [145716]
        automatically matched to 2O6V D:301-376
        complexed with mes, slz, so4; mutant
    53. Domain for 2oob:
    54. Domains for 2pe9:
      1. 853819Domain d2pe9a1: 2pe9 A:1-72 [149399]
        automatically matched to d1aara_
      2. 853820Domain d2pe9b1: 2pe9 B:1-72 [149400]
        automatically matched to d1aara_
    55. Domains for 2pea:
      1. 853821Domain d2peaa1: 2pea A:1-72 [149401]
        automatically matched to d1aara_
      2. 853822Domain d2peab1: 2pea B:1-72 [149402]
        automatically matched to d1aara_
    56. Domains for 2qho:
      1. 853765Domain d2qhoa1: 2qho A:1-72 [150790]
        automatically matched to d1aara_
      2. 853766Domain d2qhoc1: 2qho C:1-73 [150791]
        automatically matched to d1aara_
      3. 853767Domain d2qhoe1: 2qho E:1-73 [150792]
        automatically matched to d1aara_
      4. 853768Domain d2qhog1: 2qho G:1-72 [150793]
        automatically matched to d1aara_
    57. Domain for 2z59:
    58. Domains for 2zcc:
      1. 853747Domain d2zcca1: 2zcc A:1-70 [154337]
        automatically matched to d1aara_
        complexed with zn
      2. 853748Domain d2zccb1: 2zcc B:1-70 [154338]
        automatically matched to d1aara_
        complexed with zn
      3. 853749Domain d2zccc1: 2zcc C:1-71 [154339]
        automatically matched to d1aara_
        complexed with zn
    59. Domains for 2znv:
      1. 853751Domain d2znvb1: 2znv B:1-51 [154707]
        automatically matched to d1gjza_
        complexed with edo, zn; mutant
      2. 853752Domain d2znvc1: 2znv C:1-73 [154708]
        automatically matched to d1aara_
        complexed with edo, zn; mutant
      3. 853753Domain d2znve1: 2znv E:1-51 [154709]
        automatically matched to d1gjza_
        complexed with edo, zn; mutant
      4. 853754Domain d2znvf1: 2znv F:1-70 [154710]
        automatically matched to d1aara_
        complexed with edo, zn; mutant
    60. Domain for 3by4:
    61. Domains for 3c0r:
      1. 853783Domain d3c0rb1: 3c0r B:1-73 [155839]
        automatically matched to d1aara_
        complexed with 3cn
      2. 853784Domain d3c0rd1: 3c0r D:1-73 [155840]
        automatically matched to d1aara_
        complexed with 3cn
    62. Domains for 3dvg:
      1. 853804Domain d3dvgx1: 3dvg X:1-73 [157892]
        Other proteins in same PDB: d3dvga1, d3dvga2, d3dvgb1, d3dvgb2
        automatically matched to d1aara_
        mutant
      2. 853805Domain d3dvgy1: 3dvg Y:1-51 [157893]
        Other proteins in same PDB: d3dvga1, d3dvga2, d3dvgb1, d3dvgb2
        automatically matched to d1gjza_
        mutant
    63. Domains for 3dvn:
      1. 853806Domain d3dvnu1: 3dvn U:1-73 [157902]
        Other proteins in same PDB: d3dvna1, d3dvna2, d3dvnb1, d3dvnb2, d3dvnh1, d3dvnh2, d3dvnl1, d3dvnl2
        automatically matched to d1aara_
        mutant
      2. 853807Domain d3dvnv1: 3dvn V:1-51 [157903]
        Other proteins in same PDB: d3dvna1, d3dvna2, d3dvnb1, d3dvnb2, d3dvnh1, d3dvnh2, d3dvnl1, d3dvnl2
        automatically matched to d1gjza_
        mutant
      3. 853808Domain d3dvnx1: 3dvn X:1-73 [157904]
        Other proteins in same PDB: d3dvna1, d3dvna2, d3dvnb1, d3dvnb2, d3dvnh1, d3dvnh2, d3dvnl1, d3dvnl2
        automatically matched to d1aara_
        mutant
      4. 853809Domain d3dvny1: 3dvn Y:1-51 [157905]
        Other proteins in same PDB: d3dvna1, d3dvna2, d3dvnb1, d3dvnb2, d3dvnh1, d3dvnh2, d3dvnl1, d3dvnl2
        automatically matched to d1gjza_
        mutant
  3. 853854Synthetic, based on Saccharomyces cerevisiae sequence [54240] (1 PDB entry)

More info for Protein Ubiquitin from d.15.1.1: Ubiquitin-related

Timeline for Protein Ubiquitin from d.15.1.1: Ubiquitin-related: