Class d: Alpha and beta proteins (a+b) [53931] (376 folds) |
Fold d.15: beta-Grasp (ubiquitin-like) [54235] (14 superfamilies) core: beta(2)-alpha-beta(2); mixed beta-sheet 2143 |
Superfamily d.15.1: Ubiquitin-like [54236] (8 families) |
Family d.15.1.1: Ubiquitin-related [54237] (38 proteins) Pfam PF00240 |
Protein Ubiquitin [54238] (3 species) |
Baker's yeast (Saccharomyces cerevisiae), smt3 [TaxId:4932] [89830] (6 PDB entries) |
Domain d1otrb_: 1otr B: [87414] Other proteins in same PDB: d1otra_ |
Domain d1q0wb_: 1q0w B: [95516] Other proteins in same PDB: d1q0wa_ |
Domain d1wr1a1: 1wr1 A:1-76 [121184] Other proteins in same PDB: d1wr1b1 automatically matched to d1otrb_ |
Domain d2g3qb1: 2g3q B:1-76 [134569] Other proteins in same PDB: d2g3qa1 automatically matched to d1otrb_ |
Domain d2jt4b1: 2jt4 B:1-76 [148198] automatically matched to d1otrb_ |
Domain d3cmmb1: 3cmm B:1-76 [156833] automatically matched to d1otrb_ complexed with pro |
Domain d3cmmd1: 3cmm D:1-76 [156834] automatically matched to d1otrb_ complexed with pro |
Human (Homo sapiens) [TaxId:9606] [54239] (63 PDB entries) Uniprot P62988 identical sequence in many other species |
Domain d1aara_: 1aar A: [37586] di-ubiquitin |
Domain d1aarb_: 1aar B: [37587] di-ubiquitin |
Domain d1c3ta_: 1c3t A: [37594] designed hydrophobic core mutant |
Domain d1d3za_: 1d3z A: [37592] |
Domain d1f9ja_: 1f9j A: [37590] a new crystal form of tetraubiquitin |
Domain d1f9jb_: 1f9j B: [37591] a new crystal form of tetraubiquitin |
Domain d1fxtb_: 1fxt B: [65056] Other proteins in same PDB: d1fxta_ |
Domain d1g6ja_: 1g6j A: [60319] Structure in aot reverse micelles |
Domain d1gjza_: 1gjz A: [65223] |
Domain d1gjzb_: 1gjz B: [65224] |
Domain d1nbfc_: 1nbf C: [80389] Other proteins in same PDB: d1nbfa_, d1nbfb_, d1nbfe_ complex with USP7 |
Domain d1nbfd_: 1nbf D: [80390] Other proteins in same PDB: d1nbfa_, d1nbfb_, d1nbfe_ complex with USP7 complexed with glz |
Domain d1ogwa_: 1ogw A: [87001] synthetic protein with fluoro-Leu at 50 and 67 complexed with lef |
Domain d1p3qu_: 1p3q U: [87750] Other proteins in same PDB: d1p3qq_, d1p3qr_ annotated as bovine in PDB, identical to human sequence |
Domain d1p3qv_: 1p3q V: [87751] Other proteins in same PDB: d1p3qq_, d1p3qr_ annotated as bovine in PDB, identical to human sequence complexed with mse; mutant |
Domain d1q5wb_: 1q5w B: [95946] Other proteins in same PDB: d1q5wa_ complexed with zn |
Domain d1s1qb_: 1s1q B: [98352] Other proteins in same PDB: d1s1qa_, d1s1qc_ |
Domain d1s1qd_: 1s1q D: [98354] Other proteins in same PDB: d1s1qa_, d1s1qc_ complexed with acy, cu, so4 |
Domain d1sifa_: 1sif A: [105574] a multiple hydrophobic core mutant |
Domain d1tbea_: 1tbe A: [37588] tetra-ubiquitin |
Domain d1tbeb_: 1tbe B: [37589] tetra-ubiquitin |
Domain d1ubia_: 1ubi A: [37584] |
Domain d1ubqa_: 1ubq A: [37585] |
Domain d1ud7a_: 1ud7 A: [37593] designed hydrophobic core mutant |
Domain d1uzxb_: 1uzx B: [100239] Other proteins in same PDB: d1uzxa_ annotated as bovine in PDB, identical to human sequence complexed with mes, mso, so4 |
Domain d1v80a1: 1v80 A:1-76 [119867] automatically matched to d1aara_ |
Domain d1v81a1: 1v81 A:1-76 [119868] automatically matched to d1aara_ |
Domain d1wr6e1: 1wr6 E:1-72 [121186] Other proteins in same PDB: d1wr6a1, d1wr6b1, d1wr6c1, d1wr6d1 automatically matched to d1aara_ |
Domain d1wr6f1: 1wr6 F:1-73 [121187] Other proteins in same PDB: d1wr6a1, d1wr6b1, d1wr6c1, d1wr6d1 automatically matched to d1aara_ |
Domain d1wr6g1: 1wr6 G:1-72 [121188] Other proteins in same PDB: d1wr6a1, d1wr6b1, d1wr6c1, d1wr6d1 automatically matched to d1aara_ |
Domain d1wr6h1: 1wr6 H:1-74 [121189] Other proteins in same PDB: d1wr6a1, d1wr6b1, d1wr6c1, d1wr6d1 automatically matched to d1aara_ |
Domain d1wrdb1: 1wrd B:1-76 [121194] Other proteins in same PDB: d1wrda1 automatically matched to d1aara_ |
Domain d1xd3b_: 1xd3 B: [115146] Other proteins in same PDB: d1xd3a_, d1xd3c_ |
Domain d1xd3d_: 1xd3 D: [115148] Other proteins in same PDB: d1xd3a_, d1xd3c_ complexed with gve, mg |
Domain d1xqqa1: 1xqq A:1-76 [122240] automatically matched to d1aara_ |
Domain d1yd8u1: 1yd8 U:1-73 [122974] Other proteins in same PDB: d1yd8g1, d1yd8h1 automatically matched to d1aara_ |
Domain d1yd8v1: 1yd8 V:1-73 [122975] Other proteins in same PDB: d1yd8g1, d1yd8h1 automatically matched to d1aara_ |
Domain d1yx5b1: 1yx5 B:1-76 [124172] automatically matched to d1aara_ |
Domain d1yx6b1: 1yx6 B:1-76 [124173] automatically matched to d1aara_ |
Domain d1zgub1: 1zgu B:1-76 [125062] Other proteins in same PDB: d1zgua1 mutant |
Domain d2ayob1: 2ayo B:1-76 [127567] Other proteins in same PDB: d2ayoa1 automatically matched to d1aara_ |
Domain d2bgfa1: 2bgf A:1-76 [128476] automatically matched to d1aara_ |
Domain d2bgfb1: 2bgf B:1-76 [128477] automatically matched to d1aara_ |
Domain d2c7mb1: 2c7m B:1-74 [130068] Other proteins in same PDB: d2c7ma1 automatically matched to d1aara_ complexed with zn |
Domain d2c7nb1: 2c7n B:1-74 [130070] Other proteins in same PDB: d2c7na1, d2c7nc1, d2c7ng1, d2c7ni1 automatically matched to d1aara_ complexed with zn |
Domain d2c7nd1: 2c7n D:1-74 [130072] Other proteins in same PDB: d2c7na1, d2c7nc1, d2c7ng1, d2c7ni1 automatically matched to d1aara_ complexed with zn |
Domain d2c7nf1: 2c7n F:1-74 [130073] Other proteins in same PDB: d2c7na1, d2c7nc1, d2c7ng1, d2c7ni1 automatically matched to d1aara_ complexed with zn |
Domain d2c7nh1: 2c7n H:1-73 [130075] Other proteins in same PDB: d2c7na1, d2c7nc1, d2c7ng1, d2c7ni1 automatically matched to d1aara_ complexed with zn |
Domain d2c7nj1: 2c7n J:1-72 [130077] Other proteins in same PDB: d2c7na1, d2c7nc1, d2c7ng1, d2c7ni1 automatically matched to d1aara_ complexed with zn |
Domain d2c7nl1: 2c7n L:1-74 [130078] Other proteins in same PDB: d2c7na1, d2c7nc1, d2c7ng1, d2c7ni1 automatically matched to d1aara_ complexed with zn |
Domain d2d3ga1: 2d3g A:1-72 [131206] automatically matched to d1aara_ |
Domain d2d3gb1: 2d3g B:1-72 [131207] automatically matched to d1aara_ |
Domain d2denb1: 2den B:1-76 [131432] automatically matched to d1aara_ mutant |
Domain d2dx5b1: 2dx5 B:1-73 [131867] Other proteins in same PDB: d2dx5a1 automatically matched to d1aara_ |
Domain d2fida1: 2fid A:1-73 [133516] Other proteins in same PDB: d2fidb1 automatically matched to d1aara_ complexed with zn |
Domain d2fifa1: 2fif A:1-73 [133518] Other proteins in same PDB: d2fifb1, d2fifd1, d2fiff1 automatically matched to d1aara_ complexed with so4, zn |
Domain d2fifc1: 2fif C:1-73 [133520] Other proteins in same PDB: d2fifb1, d2fifd1, d2fiff1 automatically matched to d1aara_ complexed with so4, zn |
Domain d2fife1: 2fif E:1-73 [133522] Other proteins in same PDB: d2fifb1, d2fifd1, d2fiff1 automatically matched to d1aara_ complexed with so4, zn |
Domain d2fuhb1: 2fuh B:1-76 [134174] Other proteins in same PDB: d2fuha1 automatically matched to d1aara_ |
Domain d2g45b1: 2g45 B:1-76 [134578] Other proteins in same PDB: d2g45a1, d2g45d1 automatically matched to d1aara_ complexed with cl, zn |
Domain d2g45e1: 2g45 E:1-76 [134579] Other proteins in same PDB: d2g45a1, d2g45d1 automatically matched to d1aara_ complexed with cl, zn |
Domain d2gmic1: 2gmi C:501-576 [135382] Other proteins in same PDB: d2gmia1, d2gmib1 automatically matched to d1aara_ mutant |
Domain d2hd5b1: 2hd5 B:1-76 [136341] Other proteins in same PDB: d2hd5a1 automatically matched to d1aara_ complexed with zn |
Domain d2htha1: 2hth A:1-73 [136742] Other proteins in same PDB: d2hthb1 automatically matched to d1aara_ |
Domain d2ibib1: 2ibi B:1-75 [137194] Other proteins in same PDB: d2ibia1 automatically matched to d1aara_ complexed with neh, zn; mutant |
Domain d2j7qb1: 2j7q B:1-75 [138127] Other proteins in same PDB: d2j7qa1, d2j7qc1 automatically matched to d1aara_ complexed with gol, gve, mg, pg4 |
Domain d2j7qd1: 2j7q D:1-75 [138128] Other proteins in same PDB: d2j7qa1, d2j7qc1 automatically matched to d1aara_ complexed with gol, gve, mg, pg4 |
Domain d2jf5a1: 2jf5 A:1-73 [148030] automatically matched to d1aara_ complexed with cd, cl, co, mg |
Domain d2jf5b1: 2jf5 B:1-73 [148031] automatically matched to d1aara_ complexed with cd, cl, co, mg |
Domain d2jrib1: 2jri B:183-255 [148185] automatically matched to d1aara_ |
Domain d2jric1: 2jri C:259-331 [148186] automatically matched to d1aara_ |
Domain d2jy6a1: 2jy6 A:1-73 [148238] automatically matched to d1aara_ |
Domain d2jzza1: 2jzz A:1-73 [148251] automatically matched to d1aara_ |
Domain d2k39a1: 2k39 A:1-73 [148263] automatically matched to d1aara_ |
Domain d2k6db1: 2k6d B:1-73 [148276] automatically matched to d1aara_ |
Domain d2nr2a1: 2nr2 A:1-76 [138518] automatically matched to d1aara_ |
Domain d2o6va1: 2o6v A:1-75 [138922] automatically matched to d1aara_ complexed with mes, slz, so4; mutant |
Domain d2o6vb1: 2o6v B:101-151 [138923] automatically matched to d1gjza_ complexed with mes, slz, so4; mutant |
Domain d2o6vc1: 2o6v C:201-276 [138924] automatically matched to d1aara_ complexed with mes, slz, so4; mutant |
Domain d2o6vd1: 2o6v D:301-376 [145715] complexed with mes, slz, so4; mutant |
Domain d2o6ve1: 2o6v E:401-475 [138925] automatically matched to d1aara_ complexed with mes, slz, so4; mutant |
Domain d2o6vf1: 2o6v F:501-551 [138926] automatically matched to d1gjza_ complexed with mes, slz, so4; mutant |
Domain d2o6vg1: 2o6v G:601-676 [138927] automatically matched to d1aara_ complexed with mes, slz, so4; mutant |
Domain d2o6vh1: 2o6v H:702-776 [145716] automatically matched to 2O6V D:301-376 complexed with mes, slz, so4; mutant |
Domain d2oobb1: 2oob B:1-72 [139167] automatically matched to d1aara_ |
Domain d2pe9a1: 2pe9 A:1-72 [149399] automatically matched to d1aara_ |
Domain d2pe9b1: 2pe9 B:1-72 [149400] automatically matched to d1aara_ |
Domain d2peaa1: 2pea A:1-72 [149401] automatically matched to d1aara_ |
Domain d2peab1: 2pea B:1-72 [149402] automatically matched to d1aara_ |
Domain d2qhoa1: 2qho A:1-72 [150790] automatically matched to d1aara_ |
Domain d2qhoc1: 2qho C:1-73 [150791] automatically matched to d1aara_ |
Domain d2qhoe1: 2qho E:1-73 [150792] automatically matched to d1aara_ |
Domain d2qhog1: 2qho G:1-72 [150793] automatically matched to d1aara_ |
Domain d2z59b1: 2z59 B:1-73 [154162] automatically matched to d1aara_ |
Domain d2zcca1: 2zcc A:1-70 [154337] automatically matched to d1aara_ complexed with zn |
Domain d2zccb1: 2zcc B:1-70 [154338] automatically matched to d1aara_ complexed with zn |
Domain d2zccc1: 2zcc C:1-71 [154339] automatically matched to d1aara_ complexed with zn |
Domain d2znvb1: 2znv B:1-51 [154707] automatically matched to d1gjza_ complexed with edo, zn; mutant |
Domain d2znvc1: 2znv C:1-73 [154708] automatically matched to d1aara_ complexed with edo, zn; mutant |
Domain d2znve1: 2znv E:1-51 [154709] automatically matched to d1gjza_ complexed with edo, zn; mutant |
Domain d2znvf1: 2znv F:1-70 [154710] automatically matched to d1aara_ complexed with edo, zn; mutant |
Domain d3by4b1: 3by4 B:1-73 [155720] automatically matched to d1aara_ complexed with 3cn |
Domain d3c0rb1: 3c0r B:1-73 [155839] automatically matched to d1aara_ complexed with 3cn |
Domain d3c0rd1: 3c0r D:1-73 [155840] automatically matched to d1aara_ complexed with 3cn |
Domain d3dvnu1: 3dvn U:1-73 [157902] Other proteins in same PDB: d3dvna1, d3dvna2, d3dvnb1, d3dvnb2, d3dvnh1, d3dvnh2, d3dvnl1, d3dvnl2 automatically matched to d1aara_ mutant |
Domain d3dvnv1: 3dvn V:1-51 [157903] Other proteins in same PDB: d3dvna1, d3dvna2, d3dvnb1, d3dvnb2, d3dvnh1, d3dvnh2, d3dvnl1, d3dvnl2 automatically matched to d1gjza_ mutant |
Domain d3dvnx1: 3dvn X:1-73 [157904] Other proteins in same PDB: d3dvna1, d3dvna2, d3dvnb1, d3dvnb2, d3dvnh1, d3dvnh2, d3dvnl1, d3dvnl2 automatically matched to d1aara_ mutant |
Domain d3dvny1: 3dvn Y:1-51 [157905] Other proteins in same PDB: d3dvna1, d3dvna2, d3dvnb1, d3dvnb2, d3dvnh1, d3dvnh2, d3dvnl1, d3dvnl2 automatically matched to d1gjza_ mutant |
Synthetic, based on Saccharomyces cerevisiae sequence [54240] (1 PDB entry) |
Domain d1cmxb_: 1cmx B: [37595] Other proteins in same PDB: d1cmxa_, d1cmxc_ nearly completely disordered chain D in the crystal structure |
Domain d1cmxd_: 1cmx D: [37596] Other proteins in same PDB: d1cmxa_, d1cmxc_ nearly completely disordered chain D in the crystal structure |
Timeline for Protein Ubiquitin from d.15.1.1: Ubiquitin-related: