SCOP 1.67: Protein: Ubiquitin

Lineage for Protein: Ubiquitin

Root: SCOP 1.67
Class d: Alpha and beta proteins (a+b) [53931] (260 folds)
Fold d.15: beta-Grasp (ubiquitin-like) [54235] (11 superfamilies)
core: beta(2)-alpha-beta(2); mixed beta-sheet 2143
Superfamily d.15.1: Ubiquitin-like [54236] (6 families)
Family d.15.1.1: Ubiquitin-related [54237] (14 proteins)
Protein Ubiquitin [54238] (3 species)

Species:

Baker's yeast (Saccharomyces cerevisiae), smt3 [TaxId:4932] [89830] (2 PDB entries)
1. Domain for 1otr:
  - Domain d1otrb_: 1otr B: [87414]
    Other proteins in same PDB: d1otra_
2. Domain for 1q0w:
  - Domain d1q0wb_: 1q0w B: [95516]
    Other proteins in same PDB: d1q0wa_
Human (Homo sapiens) [TaxId:9606] [54239] (17 PDB entries)
identical sequence in many other species
1. Domains for 1aar:
  1. Domain d1aara_: 1aar A: [37586]
  2. Domain d1aarb_: 1aar B: [37587]
    di-ubiquitin
2. Domain for 1c3t:
  - Domain d1c3ta_: 1c3t A: [37594]
    designed hydrophobic core mutant
3. Domain for 1d3z:
  - Domain d1d3za_: 1d3z A: [37592]
4. Domains for 1f9j:
  1. Domain d1f9ja_: 1f9j A: [37590]
  2. Domain d1f9jb_: 1f9j B: [37591]
    a new crystal form of tetraubiquitin
5. Domain for 1fxt:
  - Domain d1fxtb_: 1fxt B: [65056]
    Other proteins in same PDB: d1fxta_
6. Domain for 1g6j:
  - Domain d1g6ja_: 1g6j A: [60319]
    Structure in aot reverse micelles
7. Domains for 1gjz:
  1. Domain d1gjza_: 1gjz A: [65223]
  2. Domain d1gjzb_: 1gjz B: [65224]
8. Domains for 1nbf:
  1. Domain d1nbfc_: 1nbf C: [80389]
    Other proteins in same PDB: d1nbfa_, d1nbfb_, d1nbfe_
  2. Domain d1nbfd_: 1nbf D: [80390]
    Other proteins in same PDB: d1nbfa_, d1nbfb_, d1nbfe_
    complex with USP7
    complexed with glz
9. Domain for 1ogw:
  - Domain d1ogwa_: 1ogw A: [87001]
    synthetic protein with fluoro-Leu at 50 and 67
    complexed with lef
10. Domains for 1p3q:
  1. Domain d1p3qu_: 1p3q U: [87750]
    Other proteins in same PDB: d1p3qq_, d1p3qr_
  2. Domain d1p3qv_: 1p3q V: [87751]
    Other proteins in same PDB: d1p3qq_, d1p3qr_
    annotated as bovine in PDB, identical to human sequence
    complexed with mse; mutant
11. Domain for 1q5w:
  - Domain d1q5wb_: 1q5w B: [95946]
    Other proteins in same PDB: d1q5wa_
    complexed with zn
12. Domains for 1s1q:
  1. Domain d1s1qb_: 1s1q B: [98352]
    Other proteins in same PDB: d1s1qa_, d1s1qc_
  2. Domain d1s1qd_: 1s1q D: [98354]
    Other proteins in same PDB: d1s1qa_, d1s1qc_
    complexed with acy, cu, so4
13. Domains for 1tbe:
  1. Domain d1tbea_: 1tbe A: [37588]
  2. Domain d1tbeb_: 1tbe B: [37589]
    tetra-ubiquitin
14. Domain for 1ubi:
  - Domain d1ubi__: 1ubi - [37584]
15. Domain for 1ubq:
  - Domain d1ubq__: 1ubq - [37585]
16. Domain for 1ud7:
  - Domain d1ud7a_: 1ud7 A: [37593]
    designed hydrophobic core mutant
17. Domain for 1uzx:
  - Domain d1uzxb_: 1uzx B: [100239]
    Other proteins in same PDB: d1uzxa_
    annotated as bovine in PDB, identical to human sequence
    complexed with mes, mso, so4
Synthetic, based on Saccharomyces cerevisiae sequence [54240] (1 PDB entry)
- Domains for 1cmx:
  1. Domain d1cmxb_: 1cmx B: [37595]
    Other proteins in same PDB: d1cmxa_, d1cmxc_
  2. Domain d1cmxd_: 1cmx D: [37596]
    Other proteins in same PDB: d1cmxa_, d1cmxc_
    nearly completely disordered chain D in the crystal structure

More info for Protein Ubiquitin from d.15.1.1: Ubiquitin-related

Timeline for Protein Ubiquitin from d.15.1.1: Ubiquitin-related:

Protein Ubiquitin from d.15.1.1: Ubiquitin-related first appeared (with stable ids) in SCOP 1.55
Protein Ubiquitin from d.15.1.1: Ubiquitin-related appears in SCOP 1.65
Protein Ubiquitin from d.15.1.1: Ubiquitin-related appears in SCOP 1.69
Protein Ubiquitin from d.15.1.1: Ubiquitin-related appears in the current release, SCOPe 2.08