SCOP 1.73: Family d.15.1.1: Ubiquitin-related

Lineage for Family d.15.1.1: Ubiquitin-related

1. Root: SCOP 1.73

2. Class d: Alpha and beta proteins (a+b) [53931] (334 folds)

3. Fold d.15: beta-Grasp (ubiquitin-like) [54235] (13 superfamilies)
   core: beta(2)-alpha-beta(2); mixed beta-sheet 2143

4. Superfamily d.15.1: Ubiquitin-like [54236] (7 families)

5. Family d.15.1.1: Ubiquitin-related [54237] (38 proteins)
   Pfam PF00240

Proteins:

1. 1700011n24rik protein [110796] (1 species)

   • Species Mouse (Mus musculus) [TaxId:10090] [110797] (1 PDB entry)

2. 2'-5'-oligoadenylate synthetase-like protein, OASL [117808] (1 species)

   • Species Human (Homo sapiens) [TaxId:9606] [117809] (1 PDB entry)

3. 4931431F19Rik [142950] (1 species)

   • Species Mouse (Mus musculus) [TaxId:10090] [142951] (1 PDB entry)
     structure of the C-terminal UBA domain is also known (PDB 1vej)

4. 8430435i17rik protein [110798] (1 species)

   • Species Mouse (Mus musculus) [TaxId:10090] [110799] (1 PDB entry)

5. Bag-family molecular chaperone regulator-1 [142932] (1 species)

   • Species Human (Homo sapiens) [TaxId:9606] [142933] (1 PDB entry)
     the BAG domain structure is also known (scop_sp 63494)

6. Dendritic cell-derived ubiquitin-like protein [142954] (1 species)

   • Species Human (Homo sapiens) [TaxId:9606] [142955] (1 PDB entry)

7. DSK2 [142940] (1 species)

   • Species Baker's yeast (Saccharomyces cerevisiae) [TaxId:4932] [142941] (2 PDB entries)

8. Elongin B [54246] (2 species)

   1. Species Human (Homo sapiens) [TaxId:9606] [54247] (5 PDB entries)

   2. Species Mouse (Mus musculus) [TaxId:10090] [142930] (1 PDB entry)

9. Homocysteine-responsive endoplasmic reticulum-resident ubiquitin-like domain member 1 protein, HERPUD1 [117802] (1 species)

   • Species Human (Homo sapiens) [TaxId:9606] [117803] (1 PDB entry)

10. hypothetical D7wsu128e protein [110800] (1 species)

    • Species Mouse (Mus musculus) [TaxId:10090] [110801] (1 PDB entry)

11. Hypothetical protein At3g01050 [102782] (1 species)

    • Species Thale cress (Arabidopsis thaliana) [TaxId:3702] [102783] (1 PDB entry)

12. Interferon-induced 15 kDa protein [142936] (1 species)

    • Species Human (Homo sapiens) [TaxId:9606] [142937] (1 PDB entry)

13. Large proline-rich protein BAT3 [142952] (1 species)

    • Species Human (Homo sapiens) [TaxId:9606] [142953] (1 PDB entry)

14. Nedd8 [54244] (1 species)

    • Species Human (Homo sapiens) [TaxId:9606] [54245] (6 PDB entries)

15. NEDD8 ultimate buster-1, NUB1 [117814] (1 species)

    • Species Human (Homo sapiens) [TaxId:9606] [117815] (1 PDB entry)

16. NPL4-like protein 1 [142934] (1 species)

    • Species Thale cress (Arabidopsis thaliana) [TaxId:3702] [142935] (1 PDB entry)

17. Rub1 [54248] (1 species)

    • Species Mouse-ear cress (Arabidopsis thaliana) [TaxId:3702] [54249] (1 PDB entry)

18. Splicing factor 3 subunit 1, C-terminal domain [117799] (3 species)

    1. Species Human (Homo sapiens) [TaxId:9606] [142931] (1 PDB entry)

    2. Species Mouse (Mus musculus) [TaxId:10090] [117800] (1 PDB entry)

    3. Species Thale cress (Arabidopsis thaliana) [TaxId:3702] [117801] (1 PDB entry)

19. SUMO-1 (smt3 homologue) [54241] (2 species)

    1. Species Baker's yeast (Saccharomyces cerevisiae), smt3 [TaxId:4932] [54243] (3 PDB entries)

    2. Species Human (Homo sapiens) [TaxId:9606] [54242] (13 PDB entries)

20. SUMO-2 [117816] (1 species)

    • Species Human (Homo sapiens) [TaxId:9606] [117817] (10 PDB entries)

21. Tubulin-folding protein TbcE [117812] (1 species)

    • Species Mouse (Mus musculus) [TaxId:10090] [117813] (1 PDB entry)

22. Ubiquilin-3 [142946] (1 species)

    • Species Human (Homo sapiens) [TaxId:9606] [142947] (2 PDB entries)

23. Ubiquitin [54238] (3 species)

    1. Species Baker's yeast (Saccharomyces cerevisiae), smt3 [TaxId:4932] [89830] (4 PDB entries)

    2. Species Human (Homo sapiens) [TaxId:9606] [54239] (47 PDB entries)
       identical sequence in many other species

    3. Species Synthetic, based on Saccharomyces cerevisiae sequence [54240] (1 PDB entry)

24. Ubiquitin carboxyl-terminal hydrolase 14 [117804] (1 species)

    • Species Mouse (Mus musculus) [TaxId:10090] [117805] (1 PDB entry)

25. Ubiquitin-like domain of parkin [89831] (2 species)

    1. Species Human (Homo sapiens) [TaxId:9606] [89832] (1 PDB entry)

    2. Species Mouse (Mus musculus) [TaxId:10090] [89833] (1 PDB entry)

26. Ubiquitin-like domain of Rad23 homolog A (Hhr23a) [102775] (1 species)

    • Species Human (Homo sapiens) [TaxId:9606] [102776] (4 PDB entries)

27. Ubiquitin-like domain of Rad23 homolog B (Hhr23B) [102777] (1 species)

    • Species Human (Homo sapiens) [TaxId:9606] [102778] (2 PDB entries)

28. Ubiquitin-like domain of tubulin folding cofactor B [102786] (2 species)

    1. Species Mouse (Mus musculus) [TaxId:10090] [117798] (1 PDB entry)

    2. Species Nematode (Caenorhabditis elegans) [TaxId:6239] [102787] (1 PDB entry)

29. Ubiquitin-like modifier protein hub1 [82579] (1 species)

    • Species Baker's yeast (Saccharomyces cerevisiae) [TaxId:4932] [82580] (1 PDB entry)

30. Ubiquitin-like N-terminal domain of PLIC-2 [75358] (1 species)

    • Species Human (Homo sapiens) [TaxId:9606] [75359] (1 PDB entry)

31. Ubiquitin-like PHD and RING finger domain-containing protein 1 [142948] (1 species)

    • Species Human (Homo sapiens) [TaxId:9606] [142949] (1 PDB entry)

32. Ubiquitin-like PHD and RING finger domain-containing protein 2 [142944] (1 species)

    • Species Human (Homo sapiens) [TaxId:9606] [142945] (1 PDB entry)

33. Ubiquitin-like protein 3, Ubl3 [117806] (1 species)

    • Species Mouse (Mus musculus) [TaxId:10090] [117807] (1 PDB entry)

34. Ubiquitin-like protein 3300001g02rik [102784] (1 species)

    • Species Mouse (Mus musculus) [TaxId:10090] [102785] (1 PDB entry)

35. Ubiquitin-like protein 5, ubl5 [102779] (2 species)

    1. Species Human (Homo sapiens) [TaxId:9606] [102780] (1 PDB entry)

    2. Species Mouse (Mus musculus) [TaxId:10090] [102781] (1 PDB entry)

36. Ubiquitin-like protein 7 [142942] (1 species)

    • Species Mouse (Mus musculus) [TaxId:10090] [142943] (1 PDB entry)

37. Ubiquitin-like protein bab25500 (2010008E23Rik) [117810] (1 species)

    • Species Mouse (Mus musculus) [TaxId:10090] [117811] (1 PDB entry)

38. Ubiquitin-like protein smt3a, SUMO-3 [142938] (1 species)

    • Species Human (Homo sapiens) [TaxId:9606] [142939] (1 PDB entry)

More info for Family d.15.1.1: Ubiquitin-related

Timeline for Family d.15.1.1: Ubiquitin-related:

• Family d.15.1.1: Ubiquitin-related first appeared (with stable ids) in SCOP 1.55
  
• Family d.15.1.1: Ubiquitin-related appears in SCOP 1.71
  
• Family d.15.1.1: Ubiquitin-related appears in SCOP 1.75
  
• Family d.15.1.1: Ubiquitin-related appears in the current release, SCOPe 2.08