Lineage for Family d.15.1.1: Ubiquitin-related

  1. Root: SCOPe 2.06
  2. 2152203Class d: Alpha and beta proteins (a+b) [53931] (385 folds)
  3. 2158219Fold d.15: beta-Grasp (ubiquitin-like) [54235] (14 superfamilies)
    core: beta(2)-alpha-beta(2); mixed beta-sheet 2143
  4. 2158220Superfamily d.15.1: Ubiquitin-like [54236] (11 families) (S)
  5. 2158221Family d.15.1.1: Ubiquitin-related [54237] (39 protein domains)
    Pfam PF00240

Protein Domains:

  1. 21582221700011n24rik protein [110796] (1 species)
  2. 21582252'-5'-oligoadenylate synthetase-like protein, OASL [117808] (1 species)
  3. 21582284931431F19Rik [142950] (1 species)
  4. 21582318430435i17rik protein [110798] (1 species)
  5. 2158234Bag-family molecular chaperone regulator-1 [142932] (2 species)
    1. 2158235Species Human (Homo sapiens) [TaxId:9606] [142933] (1 PDB entry)
      Uniprot Q99933 72-152
      the BAG domain structure is also known (63494)
    2. 2158237Species Mouse (Mus musculus) [TaxId:10090] [255463] (2 PDB entries)
  6. 2158240Dendritic cell-derived ubiquitin-like protein [142954] (1 species)
  7. 2158243DSK2 [142940] (1 species)
  8. 2158246Elongin B [54246] (2 species)
    1. 2158247Species Human (Homo sapiens) [TaxId:9606] [54247] (38 PDB entries)
    2. 2158344Species Mouse (Mus musculus) [TaxId:10090] [142930] (1 PDB entry)
      Uniprot P62869 1-98
  9. 2158346Homocysteine-responsive endoplasmic reticulum-resident ubiquitin-like domain member 1 protein, HERPUD1 [117802] (1 species)
  10. 2158349hypothetical D7wsu128e protein [110800] (1 species)
  11. 2158352Hypothetical protein At3g01050 [102782] (1 species)
  12. 2158355Interferon-induced 15 kDa protein [142936] (1 species)
  13. 2158359Large proline-rich protein BAT3 [142952] (1 species)
  14. 2158362Nedd8 [54244] (1 species)
  15. 2158402NEDD8 ultimate buster-1, NUB1 [117814] (1 species)
  16. 2158405NPL4-like protein 1 [142934] (1 species)
  17. 2158408Rub1 [54248] (1 species)
  18. 2158411Splicing factor 3 subunit 1, C-terminal domain [117799] (3 species)
    1. 2158412Species Human (Homo sapiens) [TaxId:9606] [142931] (1 PDB entry)
      Uniprot Q15459 704-789
    2. 2158414Species Mouse (Mus musculus) [TaxId:10090] [117800] (1 PDB entry)
      Uniprot Q8K4Z5 685-786
    3. 2158416Species Thale cress (Arabidopsis thaliana) [TaxId:3702] [117801] (1 PDB entry)
      SQ Q8RXF1 683-780; T5E21.13/At1g14650
  19. 2158418SUMO-1 (smt3 homologue) [54241] (3 species)
    1. 2158419Species Baker's yeast (Saccharomyces cerevisiae), smt3 [TaxId:4932] [54243] (3 PDB entries)
    2. 2158424Species Fruit fly (Drosophila melanogaster) [TaxId:7227] [256390] (1 PDB entry)
    3. 2158426Species Human (Homo sapiens) [TaxId:9606] [54242] (10 PDB entries)
      Uniprot Q93068
  20. 2158435SUMO-2 [117816] (1 species)
  21. 2158447Tubulin-folding protein TbcE [117812] (1 species)
  22. 2158450Ubiquilin-3 [142946] (1 species)
  23. 2158454Ubiquitin [54238] (8 species)
    1. 2158455Species African clawed frog (Xenopus laevis) [TaxId:8355] [224918] (1 PDB entry)
    2. 2158457Species Baker's yeast (Saccharomyces cerevisiae), smt3 [TaxId:4932] [89830] (13 PDB entries)
    3. 2158468Species Cow (Bos taurus) [TaxId:9913] [224919] (34 PDB entries)
    4. 2158532Species Human (Homo sapiens) [TaxId:9606] [54239] (208 PDB entries)
      Uniprot P62988
      identical sequence in many other species
    5. 2158857Species Mouse (Mus musculus) [TaxId:10090] [190020] (10 PDB entries)
    6. 2158882Species Norway rat (Rattus norvegicus) [TaxId:10116] [224920] (1 PDB entry)
    7. 2158884Species Synthetic, based on Saccharomyces cerevisiae sequence [54240] (1 PDB entry)
    8. 2292057Species Saccharomyces cerevisiae [TaxId:559292] [335358] (1 PDB entry)
  24. 2158887Ubiquitin carboxyl-terminal hydrolase 14 [117804] (1 species)
  25. 2158890Ubiquitin-like domain of parkin [89831] (2 species)
    1. 2158891Species Human (Homo sapiens) [TaxId:9606] [89832] (2 PDB entries)
    2. 2158893Species Mouse (Mus musculus) [TaxId:10090] [89833] (2 PDB entries)
  26. 2158896Ubiquitin-like domain of Rad23 homolog A (Hhr23a) [102775] (1 species)
  27. 2158902Ubiquitin-like domain of Rad23 homolog B (Hhr23B) [102777] (1 species)
  28. 2158906Ubiquitin-like domain of tubulin folding cofactor B [102786] (2 species)
    1. 2158907Species Mouse (Mus musculus) [TaxId:10090] [117798] (1 PDB entry)
      Uniprot Q9D1E6 11-92
    2. 2158909Species Nematode (Caenorhabditis elegans) [TaxId:6239] [102787] (1 PDB entry)
  29. 2158911Ubiquitin-like modifier protein hub1 [82579] (1 species)
  30. 2158914Ubiquitin-like N-terminal domain of PLIC-2 [75358] (1 species)
  31. 2158917Ubiquitin-like PHD and RING finger domain-containing protein 1 [142948] (1 species)
  32. 2158920Ubiquitin-like PHD and RING finger domain-containing protein 2 [142944] (1 species)
  33. 2158923Ubiquitin-like protein 3, Ubl3 [117806] (1 species)
  34. 2158926Ubiquitin-like protein 3300001g02rik [102784] (1 species)
  35. 2158929Ubiquitin-like protein 5, ubl5 [102779] (2 species)
    1. 2158930Species Human (Homo sapiens) [TaxId:9606] [102780] (1 PDB entry)
    2. 2158932Species Mouse (Mus musculus) [TaxId:10090] [102781] (1 PDB entry)
  36. 2158934Ubiquitin-like protein 7 [142942] (1 species)
  37. 2158937Ubiquitin-like protein bab25500 (2010008E23Rik) [117810] (1 species)
  38. 2158940Ubiquitin-like protein smt3a, SUMO-3 [142938] (1 species)
  39. 2158943automated matches [190118] (12 species)
    not a true protein
    1. 2158944Species African clawed frog (Xenopus laevis) [TaxId:8355] [255337] (1 PDB entry)
    2. 2158947Species Baker's yeast (Saccharomyces cerevisiae) [TaxId:4932] [189675] (2 PDB entries)
    3. 2158951Species Baker's yeast (Saccharomyces cerevisiae) [TaxId:559292] [193751] (7 PDB entries)
    4. 2158958Species Cow (Bos taurus) [TaxId:9913] [197078] (6 PDB entries)
    5. 2158964Species Entamoeba (Entamoeba histolytica) [TaxId:5759] [193323] (2 PDB entries)
    6. 2158968Species Human (Homo sapiens) [TaxId:9606] [189560] (94 PDB entries)
    7. 2159126Species Mouse (Mus musculus) [TaxId:10090] [187278] (3 PDB entries)
    8. 2159131Species Paramecium tetraurelia strain d4-2 [TaxId:412030] [161334] (1 PDB entry)
    9. 2159133Species Schizosaccharomyces pombe [TaxId:284812] [196615] (2 PDB entries)
    10. 2286478Species Pseudozyma antarctica [TaxId:84753] [329779] (1 PDB entry)
    11. 2291385Species Naegleria gruberi [TaxId:5762] [334686] (1 PDB entry)
    12. 2297945Species Musca domestica [TaxId:7370] [341246] (1 PDB entry)

More info for Family d.15.1.1: Ubiquitin-related

Timeline for Family d.15.1.1: Ubiquitin-related: