Lineage for Species: Mouse (Mus musculus), HP1 beta (MOD1, M31) [TaxId: 10090]

  1. Root: SCOP 1.73
  2. 651986Class b: All beta proteins [48724] (165 folds)
  3. 665027Fold b.34: SH3-like barrel [50036] (18 superfamilies)
    barrel, partly opened; n*=4, S*=8; meander
    the last strand is interrupted by a turn of 3-10 helix
  4. 665974Superfamily b.34.13: Chromo domain-like [54160] (3 families) (S)
    SH3-like barrel is capped by a C-terminal helix
  5. 665998Family b.34.13.2: Chromo domain [54165] (7 proteins)
    lacks the SH3-like barrel first strand that can be complemented by bound peptide ligand; in shadow chromo domain the corresponding site is altered by insertion; similarity to the IL8-like fold
  6. 666040Protein Heterochromatin protein 1, HP1 [54166] (3 species)
    duplication: consists of two homologous domains, N-terminal chromo domain and C-terminal chromo shadow domain
  7. 666048Species Mouse (Mus musculus), HP1 beta (MOD1, M31) [TaxId:10090] [54167] (5 PDB entries)

PDB entries in Species: Mouse (Mus musculus), HP1 beta (MOD1, M31) [TaxId: 10090]:

  1. Domain(s) for 1ap0:
  2. Domain(s) for 1dz1:
    1. 666053Domain d1dz1a_: 1dz1 A: [37473]
    2. 666054Domain d1dz1b_: 1dz1 B: [37474]
      C-terminal shadow chromo domain
  3. Domain(s) for 1guw:
    • 666055Domain d1guwa_: 1guw A: [70584]
      Chromo domain complexed with the lysine 9-methyl histone H3 N-terminal peptide
      complexed with mly
  4. Domain(s) for 1s4z:
    1. 666056Domain d1s4za_: 1s4z A: [98515]
    2. 666057Domain d1s4zb_: 1s4z B: [98516]
      Chromo shadow domain complexed with pxvxl motif peptide of caf-1, chain C
  5. Domain(s) for 2fmm:
    1. 666049Domain d2fmma1: 2fmm A:108-175 [133782]
      automatically matched to d1s4za_
      complexed with so4
    2. 666050Domain d2fmmb1: 2fmm B:109-175 [133783]
      automatically matched to d1s4za_
      complexed with so4
    3. 666051Domain d2fmmc1: 2fmm C:109-175 [133784]
      automatically matched to d1s4za_
      complexed with so4
    4. 666052Domain d2fmmd1: 2fmm D:110-175 [133785]
      automatically matched to d1s4za_
      complexed with so4

More info for Species Mouse (Mus musculus), HP1 beta (MOD1, M31) [TaxId:10090] from b.34.13.2 Heterochromatin protein 1, HP1

Timeline for Species Mouse (Mus musculus), HP1 beta (MOD1, M31) [TaxId:10090] from b.34.13.2 Heterochromatin protein 1, HP1: