Lineage for Protein: Ribonuclease A (also ribonuclease B, S)

  1. Root: SCOP 1.73
  2. 713694Class d: Alpha and beta proteins (a+b) [53931] (334 folds)
  3. 715752Fold d.5: RNase A-like [54075] (1 superfamily)
    contains long curved beta-sheet and 3 helices
  4. 715753Superfamily d.5.1: RNase A-like [54076] (1 family) (S)
    can be classified as disulfide-rich
  5. 715754Family d.5.1.1: Ribonuclease A-like [54077] (8 proteins)
  6. 715828Protein Ribonuclease A (also ribonuclease B, S) [54078] (3 species)

Species:

  1. 715829Cow (Bos taurus) [TaxId:9913] [54079] (142 PDB entries)
    1. Domains for 1a2w:
      1. 715969Domain d1a2wa_: 1a2w A: [37248]
      2. 715970Domain d1a2wb_: 1a2w B: [37249]
        3d domain-swapped dimer
        complexed with cl, so4
    2. Domain for 1a5p:
    3. Domain for 1a5q:
    4. Domains for 1afk:
      1. 715897Domain d1afka_: 1afk A: [37199]
      2. 715898Domain d1afkb_: 1afk B: [37200]
        complexed with pap
    5. Domains for 1afl:
      1. 715908Domain d1afla_: 1afl A: [37208]
      2. 715909Domain d1aflb_: 1afl B: [37209]
        complexed with atr, cit
    6. Domains for 1afu:
      1. 715971Domain d1afua_: 1afu A: [37244]
      2. 715972Domain d1afub_: 1afu B: [37245]
    7. Domain for 1aqp:
    8. Domain for 1bel:
    9. Domains for 1bzq:
      1. 716008Domain d1bzqa_: 1bzq A: [37270]
        Other proteins in same PDB: d1bzqk_, d1bzql_, d1bzqm_, d1bzqn_
      2. 716009Domain d1bzqb_: 1bzq B: [37271]
        Other proteins in same PDB: d1bzqk_, d1bzql_, d1bzqm_, d1bzqn_
      3. 716010Domain d1bzqc_: 1bzq C: [37272]
        Other proteins in same PDB: d1bzqk_, d1bzql_, d1bzqm_, d1bzqn_
      4. 716011Domain d1bzqd_: 1bzq D: [37273]
        Other proteins in same PDB: d1bzqk_, d1bzql_, d1bzqm_, d1bzqn_
        complexed with po4
    10. Domain for 1c0b:
    11. Domain for 1c0c:
    12. Domain for 1c8w:
    13. Domain for 1c9v:
    14. Domain for 1c9x:
    15. Domain for 1cjq:
    16. Domain for 1cjr:
    17. Domain for 1d5d:
    18. Domain for 1d5e:
    19. Domain for 1d5h:
    20. Domain for 1dfj:
    21. Domains for 1dy5:
      1. 715830Domain d1dy5a_: 1dy5 A: [37163]
      2. 715831Domain d1dy5b_: 1dy5 B: [37164]
        deamidated derivative
        complexed with act, ias, ipa, so4; mutant
    22. Domain for 1eic:
    23. Domain for 1eid:
    24. Domain for 1eie:
    25. Domains for 1eos:
      1. 715955Domain d1eosa_: 1eos A: [37237]
      2. 715956Domain d1eosb_: 1eos B: [37238]
        complexed with u2g
    26. Domain for 1eow:
    27. Domains for 1f0v:
      1. 715886Domain d1f0va_: 1f0v A: [37190]
      2. 715887Domain d1f0vb_: 1f0v B: [37191]
      3. 715888Domain d1f0vc_: 1f0v C: [37192]
      4. 715889Domain d1f0vd_: 1f0v D: [37193]
        a new type of 3d domain swapping
        complexed with gol, po4
    28. Domain for 1fev:
      • 715988Domain d1fev.1: 1fev A:,B: [37254]
        chemical Ala 4 to Aib 'mutation'
        complexed with so4; mutant
    29. Domain for 1fs3:
    30. Domains for 1h8x:
      1. 715957Domain d1h8xa_: 1h8x A: [65739]
      2. 715958Domain d1h8xb_: 1h8x B: [65740]
        domain-swapped dimer
        mutant
    31. Domain for 1izp:
    32. Domain for 1izq:
    33. Domain for 1izr:
    34. Domain for 1j7z:
    35. Domain for 1j80:
    36. Domain for 1j81:
    37. Domain for 1j82:
    38. Domains for 1jn4:
      1. 715959Domain d1jn4a_: 1jn4 A: [84179]
      2. 715960Domain d1jn4b_: 1jn4 B: [84180]
        complexed with 139
    39. Domains for 1js0:
      1. 715983Domain d1js0a_: 1js0 A: [71831]
      2. 715984Domain d1js0b_: 1js0 B: [71832]
      3. 715985Domain d1js0c_: 1js0 C: [71833]
        domain-swapped minor trimer
        complexed with so4
    40. Domains for 1jvt:
      1. 715946Domain d1jvta_: 1jvt A: [71901]
      2. 715947Domain d1jvtb_: 1jvt B: [71902]
    41. Domains for 1jvu:
      1. 715929Domain d1jvua_: 1jvu A: [71903]
      2. 715930Domain d1jvub_: 1jvu B: [71904]
        complexed with c2p
    42. Domains for 1jvv:
      1. 715978Domain d1jvva_: 1jvv A: [71905]
      2. 715979Domain d1jvvb_: 1jvv B: [71906]
    43. Domain for 1kf2:
    44. Domain for 1kf3:
    45. Domain for 1kf4:
    46. Domain for 1kf5:
    47. Domain for 1kf7:
    48. Domain for 1kf8:
    49. Domain for 1kh8:
    50. Domains for 1lsq:
      1. 715918Domain d1lsqa_: 1lsq A: [37211]
      2. 715919Domain d1lsqb_: 1lsq B: [37212]
        ASN 67 replaced by a beta-aspartyl residue
        complexed with ias, so4
    51. Domains for 1o0f:
      1. 715878Domain d1o0fa_: 1o0f A: [92395]
      2. 715879Domain d1o0fb_: 1o0f B: [92396]
        complexed with a3p
    52. Domains for 1o0h:
      1. 715839Domain d1o0ha_: 1o0h A: [92397]
      2. 715840Domain d1o0hb_: 1o0h B: [92398]
        complexed with adp
    53. Domains for 1o0m:
      1. 715870Domain d1o0ma_: 1o0m A: [92399]
      2. 715871Domain d1o0mb_: 1o0m B: [92400]
        complexed with u2p
    54. Domains for 1o0n:
      1. 715872Domain d1o0na_: 1o0n A: [92401]
      2. 715873Domain d1o0nb_: 1o0n B: [92402]
        complexed with u3p
    55. Domains for 1o0o:
      1. 715841Domain d1o0oa_: 1o0o A: [92403]
      2. 715842Domain d1o0ob_: 1o0o B: [92404]
        complexed with a2p
    56. Domains for 1qhc:
      1. 715920Domain d1qhca_: 1qhc A: [37215]
      2. 715921Domain d1qhcb_: 1qhc B: [37216]
        complexed with pua
    57. Domain for 1rar:
    58. Domain for 1ras:
    59. Domain for 1rat:
    60. Domains for 1rbb:
      1. 716005Domain d1rbba_: 1rbb A: [37268]
      2. 716006Domain d1rbbb_: 1rbb B: [37269]
    61. Domain for 1rbc:
    62. Domain for 1rbd:
    63. Domain for 1rbe:
    64. Domain for 1rbf:
    65. Domain for 1rbg:
    66. Domain for 1rbh:
    67. Domain for 1rbi:
    68. Domain for 1rbj:
    69. Domain for 1rbn:
    70. Domain for 1rbw:
    71. Domain for 1rbx:
    72. Domain for 1rca:
    73. Domain for 1rcn:
    74. Domain for 1rha:
    75. Domain for 1rhb:
    76. Domain for 1rnc:
    77. Domain for 1rnd:
    78. Domain for 1rnm:
    79. Domain for 1rnn:
    80. Domain for 1rno:
    81. Domain for 1rnq:
    82. Domain for 1rnu:
    83. Domain for 1rnv:
    84. Domain for 1rnw:
    85. Domain for 1rnx:
    86. Domain for 1rny:
    87. Domain for 1rnz:
    88. Domain for 1rob:
    89. Domain for 1rpf:
    90. Domain for 1rpg:
    91. Domain for 1rph:
    92. Domain for 1rsm:
    93. Domain for 1rta:
    94. Domain for 1rtb:
    95. Domain for 1ruv:
    96. Domain for 1srn:
    97. Domain for 1ssa:
    98. Domain for 1ssb:
    99. Domain for 1ssc:
    100. Domains for 1u1b:
      1. 715975Domain d1u1ba1: 1u1b A:21-124 [119419]
        automatically matched to d1rbc__
        complexed with pax
      2. 715976Domain d1u1bb1: 1u1b B:21-124 [119420]
        automatically matched to d1rbc__
        complexed with pax
    101. Domains for 1w4o:
      1. 715893Domain d1w4oa1: 1w4o A:21-124 [120633]
        automatically matched to d1rbc__
        complexed with ua3
      2. 715894Domain d1w4ob1: 1w4o B:21-124 [120634]
        automatically matched to d1rbc__
        complexed with ua3
    102. Domains for 1w4p:
      1. 715913Domain d1w4pa1: 1w4p A:21-124 [120635]
        automatically matched to d1rbc__
        complexed with um3
      2. 715914Domain d1w4pb1: 1w4p B:21-124 [120636]
        automatically matched to d1rbc__
        complexed with um3
    103. Domains for 1w4q:
      1. 715903Domain d1w4qa1: 1w4q A:21-124 [120637]
        automatically matched to d1rbc__
        complexed with umf
      2. 715904Domain d1w4qb1: 1w4q B:21-124 [120638]
        automatically matched to d1rbc__
        complexed with umf
    104. Domains for 1wbu:
      1. 715943Domain d1wbua1: 1wbu A:21-124 [120862]
        automatically matched to d1rbc__
        complexed with wbu
      2. 715944Domain d1wbub1: 1wbu B:21-124 [120863]
        automatically matched to d1rbc__
        complexed with wbu
    105. Domains for 1xps:
      1. 715905Domain d1xpsa_: 1xps A: [37202]
      2. 715906Domain d1xpsb_: 1xps B: [37203]
    106. Domains for 1xpt:
      1. 715936Domain d1xpta_: 1xpt A: [37219]
      2. 715937Domain d1xptb_: 1xpt B: [37220]
    107. Domain for 1z3l:
    108. Domain for 1z3m:
    109. Domain for 1z3p:
    110. Domains for 1z6d:
      1. 715867Domain d1z6da1: 1z6d A:21-124 [124516]
        automatically matched to d1rbc__
        complexed with imp
      2. 715868Domain d1z6db1: 1z6d B:21-124 [124517]
        automatically matched to d1rbc__
        complexed with imp
    111. Domains for 1z6s:
      1. 715862Domain d1z6sa1: 1z6s A:21-124 [124569]
        automatically matched to d1rbc__
        complexed with amp
      2. 715863Domain d1z6sb1: 1z6s B:21-124 [124570]
        automatically matched to d1rbc__
        complexed with amp
    112. Domain for 2aas:
    113. Domain for 2blp:
    114. Domain for 2blz:
    115. Domain for 2e33:
    116. Domains for 2g4w:
      1. 715952Domain d2g4wa1: 2g4w A:21-124 [134613]
        automatically matched to d1rbc__
        complexed with cl, so4
      2. 715953Domain d2g4wb1: 2g4w B:21-124 [134614]
        automatically matched to d1rbc__
        complexed with cl, so4
    117. Domain for 2g4x:
    118. Domains for 2g8q:
      1. 715859Domain d2g8qa1: 2g8q A:21-124 [134781]
        automatically matched to d1rbc__
      2. 715860Domain d2g8qb1: 2g8q B:21-124 [134782]
        automatically matched to d1rbc__
    119. Domains for 2g8r:
      1. 715895Domain d2g8ra1: 2g8r A:21-124 [134783]
        automatically matched to d1rbc__
        complexed with n3e
      2. 715896Domain d2g8rb1: 2g8r B:21-124 [134784]
        automatically matched to d1rbc__
        complexed with n3e
    120. Domain for 2rat:
    121. Domain for 2rln:
    122. Domain for 2rns:
    123. Domain for 3rat:
    124. Domain for 3rn3:
    125. Domain for 3rsd:
    126. Domain for 3rsk:
    127. Domain for 3rsp:
    128. Domain for 3srn:
    129. Domain for 4rat:
    130. Domain for 4rsd:
    131. Domain for 4rsk:
    132. Domain for 4srn:
    133. Domain for 5rat:
    134. Domain for 5rsa:
    135. Domain for 6rat:
    136. Domain for 6rsa:
    137. Domain for 7rat:
    138. Domain for 7rsa:
    139. Domain for 8rat:
    140. Domains for 8rsa:
      1. 715915Domain d8rsaa_: 8rsa A: [37205]
      2. 715916Domain d8rsab_: 8rsa B: [37206]
        complexed with adt
    141. Domain for 9rat:
    142. Domains for 9rsa:
      1. 715927Domain d9rsaa_: 9rsa A: [37221]
      2. 715928Domain d9rsab_: 9rsa B: [37222]
        complexed with adu
  2. 716013Human (Homo sapiens), des1-7 [TaxId:9606] [54080] (4 PDB entries)
    1. Domains for 1dza:
      1. 716019Domain d1dzaa_: 1dza A: [37275]
      2. 716020Domain d1dzab_: 1dza B: [37276]
        designed cytotoxic mutant
    2. Domain for 1e21:
    3. Domains for 1z7x:
      1. 716014Domain d1z7xx1: 1z7x X:8-125 [124676]
        Other proteins in same PDB: d1z7xw1, d1z7xy1
        automatically matched to d1e21a_
        complexed with cit
      2. 716015Domain d1z7xz1: 1z7x Z:8-125 [124678]
        Other proteins in same PDB: d1z7xw1, d1z7xy1
        automatically matched to d1e21a_
        complexed with cit
    4. Domains for 2q4g:
      1. 716017Domain d2q4gx1: 2q4g X:8-125 [139850]
        Other proteins in same PDB: d2q4gw1, d2q4gy1
        automatically matched to d1e21a_
        complexed with cit
      2. 716018Domain d2q4gz1: 2q4g Z:8-125 [139852]
        Other proteins in same PDB: d2q4gw1, d2q4gy1
        automatically matched to d1e21a_
        complexed with cit
  3. 716021Rat (Rattus norvegicus) [TaxId:10116] [54081] (1 PDB entry)

More info for Protein Ribonuclease A (also ribonuclease B, S) from d.5.1.1: Ribonuclease A-like

Timeline for Protein Ribonuclease A (also ribonuclease B, S) from d.5.1.1: Ribonuclease A-like: