SCOPe 2.03: Species: Slime mold (Physarum polycephalum) [TaxId: 5791]

Lineage for Species: Slime mold (Physarum polycephalum) [TaxId: 5791]

Root: SCOPe 2.03
Class d: Alpha and beta proteins (a+b) [53931] (376 folds)
Fold d.4: His-Me finger endonucleases [54059] (1 superfamily)
core: (alpha)-beta-omega_loop-beta-alpha; embeded in larger different structures
Superfamily d.4.1: His-Me finger endonucleases [54060] (6 families)
common motif contains conserved histidine residue and metal-binding site
Family d.4.1.3: Intron-encoded homing endonucleases [54069] (2 proteins)
Protein Intron-encoded homing endonuclease I-PpoI [54070] (1 species)
Species Slime mold (Physarum polycephalum) [TaxId:5791] [54071] (8 PDB entries)

PDB entries in Species: Slime mold (Physarum polycephalum) [TaxId: 5791]:

Domain(s) for 1a73:
1. Domain d1a73a_: 1a73 A: [37145]
  protein/DNA complex; complexed with mg, zn
2. Domain d1a73b_: 1a73 B: [37146]
  protein/DNA complex; complexed with mg, zn
Domain(s) for 1a74:
1. Domain d1a74a_: 1a74 A: [37155]
  protein/DNA complex; complexed with zn
2. Domain d1a74b_: 1a74 B: [37156]
  protein/DNA complex; complexed with zn
Domain(s) for 1cyq:
1. Domain d1cyqa_: 1cyq A: [37147]
  protein/DNA complex; complexed with mg, zn
2. Domain d1cyqb_: 1cyq B: [37148]
  protein/DNA complex; complexed with mg, zn
Domain(s) for 1cz0:
1. Domain d1cz0a_: 1cz0 A: [37151]
  protein/DNA complex; complexed with na, zn
2. Domain d1cz0b_: 1cz0 B: [37152]
  protein/DNA complex; complexed with na, zn
Domain(s) for 1evw:
1. Domain d1evwa_: 1evw A: [37157]
  protein/DNA complex; complexed with mg, zn; mutant
2. Domain d1evwb_: 1evw B: [37158]
  protein/DNA complex; complexed with mg, zn; mutant
3. Domain d1evwc_: 1evw C: [37159]
  protein/DNA complex; complexed with mg, zn; mutant
4. Domain d1evwd_: 1evw D: [37160]
  protein/DNA complex; complexed with mg, zn; mutant
Domain(s) for 1evx:
1. Domain d1evxa_: 1evx A: [37149]
  complexed with so4, zn
2. Domain d1evxb_: 1evx B: [37150]
  complexed with so4, zn
Domain(s) for 1ipp:
1. Domain d1ippa_: 1ipp A: [37153]
  protein/DNA complex; complexed with cd, mg
2. Domain d1ippb_: 1ipp B: [37154]
  protein/DNA complex; complexed with cd, mg
Domain(s) for 2o6m:
1. Domain d2o6ma_: 2o6m A: [166566]
  automated match to d1cyqa_
  protein/DNA complex; complexed with mg, zn; mutant
2. Domain d2o6mb_: 2o6m B: [166567]
  automated match to d1cyqa_
  protein/DNA complex; complexed with mg, zn; mutant

More info for Species Slime mold (Physarum polycephalum) [TaxId:5791] from d.4.1.3 Intron-encoded homing endonuclease I-PpoI

Timeline for Species Slime mold (Physarum polycephalum) [TaxId:5791] from d.4.1.3 Intron-encoded homing endonuclease I-PpoI:

Species Slime mold (Physarum polycephalum) [TaxId:5791] from d.4.1.3 Intron-encoded homing endonuclease I-PpoI first appeared (with stable ids) in SCOP 1.55
Species Slime mold (Physarum polycephalum) [TaxId:5791] from d.4.1.3 Intron-encoded homing endonuclease I-PpoI appears in SCOPe 2.02
Species Slime mold (Physarum polycephalum) [TaxId:5791] from d.4.1.3 Intron-encoded homing endonuclease I-PpoI appears in SCOPe 2.04
Species Slime mold (Physarum polycephalum) [TaxId:5791] from d.4.1.3 Intron-encoded homing endonuclease I-PpoI appears in the current release, SCOPe 2.08