Lineage for Protein: Transglutaminase catalytic domain

  1. Root: SCOPe 2.08
  2. 2923792Class d: Alpha and beta proteins (a+b) [53931] (396 folds)
  3. 2926589Fold d.3: Cysteine proteinases [54000] (1 superfamily)
    consists of one alpha-helix and 4 strands of antiparallel beta-sheet and contains the catalytic triad Cys-His-Asn
  4. 2926590Superfamily d.3.1: Cysteine proteinases [54001] (24 families) (S)
    the constitute families differ by insertion into and circular permutation of the common catalytic core made of one alpha-helix and 3-strands of beta-sheet
  5. 2927111Family d.3.1.4: Transglutaminase core [54044] (3 proteins)
  6. 2927117Protein Transglutaminase catalytic domain [54045] (4 species)

Species:

  1. 2927118Human (Homo sapiens), blood isozyme [TaxId:9606] [54046] (9 PDB entries)
    Coagulation factor XIII
    1. Domains for 1bl2:
      1. 2927125Domain d1bl2a2: 1bl2 A:191-511 [302232]
        Other proteins in same PDB: d1bl2a1, d1bl2a3, d1bl2a4, d1bl2b1, d1bl2b3, d1bl2b4
        automated match to d1f13a4
        complexed with sr
      2. 2927126Domain d1bl2b2: 1bl2 B:191-507 [302236]
        Other proteins in same PDB: d1bl2a1, d1bl2a3, d1bl2a4, d1bl2b1, d1bl2b3, d1bl2b4
        automated match to d1f13a4
        complexed with sr
    2. Domains for 1evu:
      1. 2927121Domain d1evua4: 1evu A:191-508 [37113]
        Other proteins in same PDB: d1evua1, d1evua2, d1evua3, d1evub1, d1evub2, d1evub3
        complexed with ca, pgo
      2. 2927122Domain d1evub4: 1evu B:191-508 [37114]
        Other proteins in same PDB: d1evua1, d1evua2, d1evua3, d1evub1, d1evub2, d1evub3
        complexed with ca, pgo
    3. Domains for 1ex0:
      1. 2927129Domain d1ex0a4: 1ex0 A:191-510 [90468]
        Other proteins in same PDB: d1ex0a1, d1ex0a2, d1ex0a3, d1ex0b1, d1ex0b2, d1ex0b3
        complexed with ca, pgo, po4; mutant
      2. 2927130Domain d1ex0b4: 1ex0 B:191-511 [90472]
        Other proteins in same PDB: d1ex0a1, d1ex0a2, d1ex0a3, d1ex0b1, d1ex0b2, d1ex0b3
        complexed with ca, pgo, po4; mutant
    4. Domains for 1f13:
      1. 2927119Domain d1f13a4: 1f13 A:191-515 [37107]
        Other proteins in same PDB: d1f13a1, d1f13a2, d1f13a3, d1f13b1, d1f13b2, d1f13b3
      2. 2927120Domain d1f13b4: 1f13 B:191-515 [37108]
        Other proteins in same PDB: d1f13a1, d1f13a2, d1f13a3, d1f13b1, d1f13b2, d1f13b3
    5. Domains for 1fie:
      1. 2927127Domain d1fiea4: 1fie A:191-515 [37109]
        Other proteins in same PDB: d1fiea1, d1fiea2, d1fiea3, d1fieb1, d1fieb2, d1fieb3
      2. 2927128Domain d1fieb4: 1fie B:191-515 [37110]
        Other proteins in same PDB: d1fiea1, d1fiea2, d1fiea3, d1fieb1, d1fieb2, d1fieb3
    6. Domains for 1ggt:
      1. 2927135Domain d1ggta4: 1ggt A:191-515 [37111]
        Other proteins in same PDB: d1ggta1, d1ggta2, d1ggta3, d1ggtb1, d1ggtb2, d1ggtb3
      2. 2927136Domain d1ggtb4: 1ggt B:191-515 [37112]
        Other proteins in same PDB: d1ggta1, d1ggta2, d1ggta3, d1ggtb1, d1ggtb2, d1ggtb3
    7. Domains for 1ggu:
      1. 2927123Domain d1ggua4: 1ggu A:191-508 [37115]
        Other proteins in same PDB: d1ggua1, d1ggua2, d1ggua3, d1ggub1, d1ggub2, d1ggub3
        complexed with ca
      2. 2927124Domain d1ggub4: 1ggu B:191-508 [37116]
        Other proteins in same PDB: d1ggua1, d1ggua2, d1ggua3, d1ggub1, d1ggub2, d1ggub3
        complexed with ca
    8. Domains for 1ggy:
      1. 2927131Domain d1ggya4: 1ggy A:191-508 [37117]
        Other proteins in same PDB: d1ggya1, d1ggya2, d1ggya3, d1ggyb1, d1ggyb2, d1ggyb3
        complexed with yb
      2. 2927132Domain d1ggyb4: 1ggy B:191-508 [37118]
        Other proteins in same PDB: d1ggya1, d1ggya2, d1ggya3, d1ggyb1, d1ggyb2, d1ggyb3
        complexed with yb
    9. Domains for 1qrk:
      1. 2927133Domain d1qrka4: 1qrk A:191-511 [37119]
        Other proteins in same PDB: d1qrka1, d1qrka2, d1qrka3, d1qrkb1, d1qrkb2, d1qrkb3
        complexed with sr
      2. 2927134Domain d1qrkb4: 1qrk B:191-507 [37120]
        Other proteins in same PDB: d1qrka1, d1qrka2, d1qrka3, d1qrkb1, d1qrkb2, d1qrkb3
        complexed with sr
  2. 2927137Human (Homo sapiens), TGase E3 [TaxId:9606] [75334] (9 PDB entries)
    1. Domains for 1l9m:
      1. 2927146Domain d1l9ma4: 1l9m A:141-461 [73735]
        Other proteins in same PDB: d1l9ma1, d1l9ma2, d1l9ma3, d1l9mb1, d1l9mb2, d1l9mb3
        complexed with br, ca, cl
      2. 2927147Domain d1l9mb4: 1l9m B:141-460 [73739]
        Other proteins in same PDB: d1l9ma1, d1l9ma2, d1l9ma3, d1l9mb1, d1l9mb2, d1l9mb3
        complexed with br, ca, cl
    2. Domains for 1l9n:
      1. 2927148Domain d1l9na4: 1l9n A:141-460 [73743]
        Other proteins in same PDB: d1l9na1, d1l9na2, d1l9na3, d1l9nb1, d1l9nb2, d1l9nb3
        complexed with bgl, ca, cl
      2. 2927149Domain d1l9nb4: 1l9n B:141-460 [73747]
        Other proteins in same PDB: d1l9na1, d1l9na2, d1l9na3, d1l9nb1, d1l9nb2, d1l9nb3
        complexed with bgl, ca, cl
    3. Domains for 1nud:
      1. 2927153Domain d1nuda4: 1nud A:141-460 [86177]
        Other proteins in same PDB: d1nuda1, d1nuda2, d1nuda3, d1nudb1, d1nudb2, d1nudb3
        complexed with br, ca, cl
      2. 2927154Domain d1nudb4: 1nud B:141-460 [86181]
        Other proteins in same PDB: d1nuda1, d1nuda2, d1nuda3, d1nudb1, d1nudb2, d1nudb3
        complexed with br, ca, cl
    4. Domain for 1nuf:
    5. Domains for 1nug:
      1. 2927150Domain d1nuga4: 1nug A:141-461 [86189]
        Other proteins in same PDB: d1nuga1, d1nuga2, d1nuga3, d1nugb1, d1nugb2, d1nugb3
        complexed with ca, cl, mg
      2. 2927151Domain d1nugb4: 1nug B:141-459 [86193]
        Other proteins in same PDB: d1nuga1, d1nuga2, d1nuga3, d1nugb1, d1nugb2, d1nugb3
        complexed with ca, cl, mg
    6. Domains for 1rle:
      1. 2927144Domain d1rlea6: 1rle A:141-461 [303003]
        Other proteins in same PDB: d1rlea5, d1rlea7, d1rlea8, d1rleb5, d1rleb7, d1rleb8
        automated match to d1l9ma4
        complexed with ca, gsp, mg
      2. 2927145Domain d1rleb6: 1rle B:141-459 [303007]
        Other proteins in same PDB: d1rlea5, d1rlea7, d1rlea8, d1rleb5, d1rleb7, d1rleb8
        automated match to d1l9mb4
        complexed with ca, gsp, mg
    7. Domains for 1rll:
      1. 2927140Domain d1rlla2: 1rll A:141-461 [303011]
        Other proteins in same PDB: d1rlla1, d1rlla3, d1rlla4, d1rllb1, d1rllb3, d1rllb4
        automated match to d1l9ma4
        complexed with ca, gsp, mg
      2. 2927141Domain d1rllb2: 1rll B:141-459 [303015]
        Other proteins in same PDB: d1rlla1, d1rlla3, d1rlla4, d1rllb1, d1rllb3, d1rllb4
        automated match to d1l9mb4
        complexed with ca, gsp, mg
    8. Domains for 1sgx:
      1. 2927142Domain d1sgxa6: 1sgx A:141-461 [303067]
        Other proteins in same PDB: d1sgxa5, d1sgxa7, d1sgxa8, d1sgxb5, d1sgxb7, d1sgxb8
        automated match to d1l9ma4
        complexed with 5gp, ca, mg
      2. 2927143Domain d1sgxb6: 1sgx B:141-459 [303071]
        Other proteins in same PDB: d1sgxa5, d1sgxa7, d1sgxa8, d1sgxb5, d1sgxb7, d1sgxb8
        automated match to d1l9ma4
        complexed with 5gp, ca, mg
    9. Domains for 1vjj:
      1. 2927138Domain d1vjja6: 1vjj A:141-461 [303236]
        Other proteins in same PDB: d1vjja5, d1vjja7, d1vjja8, d1vjjb5, d1vjjb7, d1vjjb8
        automated match to d1l9ma4
        complexed with ca, cl, gdp, mg
      2. 2927139Domain d1vjjb6: 1vjj B:141-459 [303240]
        Other proteins in same PDB: d1vjja5, d1vjja7, d1vjja8, d1vjjb5, d1vjjb7, d1vjjb8
        automated match to d1l9ma4
        complexed with ca, cl, gdp, mg
  3. 2927155Human (Homo sapiens), tissue isozyme [TaxId:9606] [75333] (5 PDB entries)
    GDP-binding protein
    1. Domains for 1kv3:
      1. 2927163Domain d1kv3a4: 1kv3 A:146-468 [73030]
        Other proteins in same PDB: d1kv3a1, d1kv3a2, d1kv3a3, d1kv3b1, d1kv3b2, d1kv3b3, d1kv3c1, d1kv3c2, d1kv3c3, d1kv3d1, d1kv3d2, d1kv3d3, d1kv3e1, d1kv3e2, d1kv3e3, d1kv3f1, d1kv3f2, d1kv3f3
        complexed with gdp
      2. 2927164Domain d1kv3b4: 1kv3 B:146-468 [73034]
        Other proteins in same PDB: d1kv3a1, d1kv3a2, d1kv3a3, d1kv3b1, d1kv3b2, d1kv3b3, d1kv3c1, d1kv3c2, d1kv3c3, d1kv3d1, d1kv3d2, d1kv3d3, d1kv3e1, d1kv3e2, d1kv3e3, d1kv3f1, d1kv3f2, d1kv3f3
        complexed with gdp
      3. 2927165Domain d1kv3c4: 1kv3 C:146-468 [73038]
        Other proteins in same PDB: d1kv3a1, d1kv3a2, d1kv3a3, d1kv3b1, d1kv3b2, d1kv3b3, d1kv3c1, d1kv3c2, d1kv3c3, d1kv3d1, d1kv3d2, d1kv3d3, d1kv3e1, d1kv3e2, d1kv3e3, d1kv3f1, d1kv3f2, d1kv3f3
        complexed with gdp
      4. 2927166Domain d1kv3d4: 1kv3 D:146-468 [73042]
        Other proteins in same PDB: d1kv3a1, d1kv3a2, d1kv3a3, d1kv3b1, d1kv3b2, d1kv3b3, d1kv3c1, d1kv3c2, d1kv3c3, d1kv3d1, d1kv3d2, d1kv3d3, d1kv3e1, d1kv3e2, d1kv3e3, d1kv3f1, d1kv3f2, d1kv3f3
        complexed with gdp
      5. 2927167Domain d1kv3e4: 1kv3 E:146-468 [73046]
        Other proteins in same PDB: d1kv3a1, d1kv3a2, d1kv3a3, d1kv3b1, d1kv3b2, d1kv3b3, d1kv3c1, d1kv3c2, d1kv3c3, d1kv3d1, d1kv3d2, d1kv3d3, d1kv3e1, d1kv3e2, d1kv3e3, d1kv3f1, d1kv3f2, d1kv3f3
        complexed with gdp
      6. 2927168Domain d1kv3f4: 1kv3 F:146-468 [73050]
        Other proteins in same PDB: d1kv3a1, d1kv3a2, d1kv3a3, d1kv3b1, d1kv3b2, d1kv3b3, d1kv3c1, d1kv3c2, d1kv3c3, d1kv3d1, d1kv3d2, d1kv3d3, d1kv3e1, d1kv3e2, d1kv3e3, d1kv3f1, d1kv3f2, d1kv3f3
        complexed with gdp
    2. Domain for 2q3z:
    3. Domains for 3ly6:
      1. 2927160Domain d3ly6a2: 3ly6 A:146-468 [247545]
        Other proteins in same PDB: d3ly6a1, d3ly6a3, d3ly6a4, d3ly6a5, d3ly6b1, d3ly6b3, d3ly6b4, d3ly6b5, d3ly6c1, d3ly6c3, d3ly6c4, d3ly6c5
        automated match to d1kv3a4
        complexed with atp
      2. 2927161Domain d3ly6b2: 3ly6 B:146-468 [247549]
        Other proteins in same PDB: d3ly6a1, d3ly6a3, d3ly6a4, d3ly6a5, d3ly6b1, d3ly6b3, d3ly6b4, d3ly6b5, d3ly6c1, d3ly6c3, d3ly6c4, d3ly6c5
        automated match to d1kv3a4
        complexed with atp
      3. 2927162Domain d3ly6c2: 3ly6 C:146-468 [247553]
        Other proteins in same PDB: d3ly6a1, d3ly6a3, d3ly6a4, d3ly6a5, d3ly6b1, d3ly6b3, d3ly6b4, d3ly6b5, d3ly6c1, d3ly6c3, d3ly6c4, d3ly6c5
        automated match to d1kv3a4
        complexed with atp
    4. Domains for 4pyg:
      1. 2927169Domain d4pyga2: 4pyg A:146-468 [308020]
        Other proteins in same PDB: d4pyga1, d4pyga3, d4pyga4, d4pyga5, d4pygb1, d4pygb3, d4pygb4, d4pygb5, d4pyge1, d4pyge3, d4pyge4, d4pyge5
        automated match to d3ly6a2
        complexed with gtp
      2. 2927170Domain d4pygb2: 4pyg B:146-468 [308025]
        Other proteins in same PDB: d4pyga1, d4pyga3, d4pyga4, d4pyga5, d4pygb1, d4pygb3, d4pygb4, d4pygb5, d4pyge1, d4pyge3, d4pyge4, d4pyge5
        automated match to d3ly6a2
        complexed with gtp
      3. 2927171Domain d4pyge2: 4pyg E:146-468 [308030]
        Other proteins in same PDB: d4pyga1, d4pyga3, d4pyga4, d4pyga5, d4pygb1, d4pygb3, d4pygb4, d4pygb5, d4pyge1, d4pyge3, d4pyge4, d4pyge5
        automated match to d3ly6a2
        complexed with gtp
    5. Domains for 6a8p:
      1. 2927157Domain d6a8pa2: 6a8p A:146-463 [357953]
        Other proteins in same PDB: d6a8pa1, d6a8pa3, d6a8pa4, d6a8pa5, d6a8pb1, d6a8pb3, d6a8pb4, d6a8pb5, d6a8pc1, d6a8pc3, d6a8pc4
        automated match to d3ly6a2
        complexed with gtp; mutant
      2. 2927158Domain d6a8pb2: 6a8p B:146-463 [358169]
        Other proteins in same PDB: d6a8pa1, d6a8pa3, d6a8pa4, d6a8pa5, d6a8pb1, d6a8pb3, d6a8pb4, d6a8pb5, d6a8pc1, d6a8pc3, d6a8pc4
        automated match to d3ly6a2
        complexed with gtp; mutant
      3. 2927159Domain d6a8pc2: 6a8p C:146-463 [358182]
        Other proteins in same PDB: d6a8pa1, d6a8pa3, d6a8pa4, d6a8pa5, d6a8pb1, d6a8pb3, d6a8pb4, d6a8pb5, d6a8pc1, d6a8pc3, d6a8pc4
        automated match to d3ly6a2
        complexed with gtp; mutant
  4. 2927172Red sea bream (Chrysophrys major) [TaxId:143350] [64204] (1 PDB entry)

More info for Protein Transglutaminase catalytic domain from d.3.1.4: Transglutaminase core

Timeline for Protein Transglutaminase catalytic domain from d.3.1.4: Transglutaminase core: