Lineage for Species: Papaya (Carica papaya) [TaxId: 3649]
- Root: SCOPe 2.01
Class d: Alpha and beta proteins (a+b) [53931] (376 folds) 
Fold d.3: Cysteine proteinases [54000] (1 superfamily)
consists of one alpha-helix and 4 strands of antiparallel beta-sheet and contains the catalytic triad Cys-His-AsnSuperfamily d.3.1: Cysteine proteinases [54001] (23 families) 
the constitute families differ by insertion into and circular permutation of the common catalytic core made of one alpha-helix and 3-strands of beta-sheetFamily d.3.1.1: Papain-like [54002] (26 proteins) 
Protein Papain [54005] (1 species) Species Papaya (Carica papaya) [TaxId:3649] [54006] (22 PDB entries)
PDB entries in Species: Papaya (Carica papaya) [TaxId: 3649]:
- Domain(s) for 1bp4:
Domain d1bp4a_: 1bp4 A: [37011]
complexed with ald
- Domain(s) for 1bqi:
Domain d1bqia_: 1bqi A: [37014]
complexed with sba
- Domain(s) for 1cvz:
Domain d1cvza_: 1cvz A: [37005]
complexed with c48
- Domain(s) for 1khp:
Domain d1khpa_: 1khp A: [90963]
- Domain(s) for 1khq:
Domain d1khqa_: 1khq A: [90964]
- Domain(s) for 1pad:
Domain d1pada_: 1pad A: [37016]
- Domain(s) for 1pe6:
Domain d1pe6a_: 1pe6 A: [37010]
complexed with e6c, moh
- Domain(s) for 1pip:
Domain d1pipa_: 1pip A: [37007]
- Domain(s) for 1pop:
Domain d1popa_: 1pop A: [37013]
complexed with moh
- Domain(s) for 1ppd:
Domain d1ppda_: 1ppd A: [37008]
complexed with bme
- Domain(s) for 1ppn:
Domain d1ppna_: 1ppn A: [37004]
complexed with moh, o
- Domain(s) for 1ppp:
Domain d1pppa_: 1ppp A: [37009]
complexed with e6c, moh
- Domain(s) for 1stf:
Domain d1stfe_: 1stf E: [37012]
Other proteins in same PDB: d1stfi_
- Domain(s) for 2cio:
Domain d2cioa_: 2cio A: [163416]
Other proteins in same PDB: d2ciob_
automated match to d1khpa_
complexed with act, gol
- Domain(s) for 2pad:
Domain d2pada_: 2pad A: [37015]
complexed with cys
- Domain(s) for 3e1z:
Domain d3e1zb_: 3e1z B: [174538]
Other proteins in same PDB: d3e1za_
automated match to d1khpa_
complexed with acy, fmt, zn
- Domain(s) for 3ima:
Domain d3imaa_: 3ima A: [178396]
Other proteins in same PDB: d3imab_, d3imad_
automated match to d1khpa_
complexed with act
Domain d3imac_: 3ima C: [178398]
Other proteins in same PDB: d3imab_, d3imad_
automated match to d1khpa_
complexed with act
- Domain(s) for 3lfy:
Domain d3lfya_: 3lfy A: [180263]
automated match to d1khpa_
complexed with asn, gly, ser
Domain d3lfyc_: 3lfy C: [180264]
automated match to d1khpa_
complexed with asn, gly, ser
- Domain(s) for 4pad:
Domain d4pada_: 4pad A: [37018]
complexed with tck
- Domain(s) for 5pad:
Domain d5pada_: 5pad A: [37017]
- Domain(s) for 6pad:
Domain d6pada_: 6pad A: [37019]
complexed with 0pc
- Domain(s) for 9pap:
Domain d9papa_: 9pap A: [37006]
complexed with moh
More info for Species Papaya (Carica papaya) [TaxId:3649] from d.3.1.1 Papain
Timeline for Species Papaya (Carica papaya) [TaxId:3649] from d.3.1.1 Papain:
- Species Papaya (Carica papaya) [TaxId:3649] from d.3.1.1 Papain first appeared (with stable ids) in SCOP 1.55
- Species Papaya (Carica papaya) [TaxId:3649] from d.3.1.1 Papain appears in SCOP 1.75
- Species Papaya (Carica papaya) [TaxId:3649] from d.3.1.1 Papain appears in SCOPe 2.02
- Species Papaya (Carica papaya) [TaxId:3649] from d.3.1.1 Papain appears in the current release, SCOPe 2.08