Lineage for Species: Papaya (Carica papaya) [TaxId: 3649]

  1. Root: SCOPe 2.06
  2. 2152203Class d: Alpha and beta proteins (a+b) [53931] (385 folds)
  3. 2154577Fold d.3: Cysteine proteinases [54000] (1 superfamily)
    consists of one alpha-helix and 4 strands of antiparallel beta-sheet and contains the catalytic triad Cys-His-Asn
  4. 2154578Superfamily d.3.1: Cysteine proteinases [54001] (24 families) (S)
    the constitute families differ by insertion into and circular permutation of the common catalytic core made of one alpha-helix and 3-strands of beta-sheet
  5. 2154579Family d.3.1.1: Papain-like [54002] (26 protein domains)
  6. 2154859Protein Papain [54005] (1 species)
  7. 2154860Species Papaya (Carica papaya) [TaxId:3649] [54006] (23 PDB entries)

PDB entries in Species: Papaya (Carica papaya) [TaxId: 3649]:

  1. Domain(s) for 1bp4:
  2. Domain(s) for 1bqi:
  3. Domain(s) for 1cvz:
  4. Domain(s) for 1khp:
  5. Domain(s) for 1khq:
  6. Domain(s) for 1pad:
  7. Domain(s) for 1pe6:
  8. Domain(s) for 1pip:
  9. Domain(s) for 1pop:
  10. Domain(s) for 1ppd:
  11. Domain(s) for 1ppn:
  12. Domain(s) for 1ppp:
  13. Domain(s) for 1stf:
  14. Domain(s) for 2cio:
  15. Domain(s) for 2pad:
  16. Domain(s) for 3e1z:
  17. Domain(s) for 3ima:
    1. 2154868Domain d3imaa_: 3ima A: [178396]
      Other proteins in same PDB: d3imab_, d3imad_
      automated match to d1khpa_
      complexed with act
    2. 2154869Domain d3imac_: 3ima C: [178398]
      Other proteins in same PDB: d3imab_, d3imad_
      automated match to d1khpa_
      complexed with act
  18. Domain(s) for 3lfy:
    1. 2154879Domain d3lfya_: 3lfy A: [180263]
      automated match to d1khpa_
      complexed with asn, gly, ser
    2. 2154880Domain d3lfyc_: 3lfy C: [180264]
      automated match to d1khpa_
      complexed with asn, gly, ser
  19. Domain(s) for 4kp9:
    1. 2154876Domain d4kp9a_: 4kp9 A: [256886]
      automated match to d1cvza_
      complexed with act, bu1, cl, na, so4, yxx, yxz
    2. 2154877Domain d4kp9b_: 4kp9 B: [256889]
      automated match to d1cvza_
      complexed with act, bu1, cl, na, so4, yxx, yxz
  20. Domain(s) for 4pad:
  21. Domain(s) for 5pad:
  22. Domain(s) for 6pad:
  23. Domain(s) for 9pap:

More info for Species Papaya (Carica papaya) [TaxId:3649] from d.3.1.1 Papain

Timeline for Species Papaya (Carica papaya) [TaxId:3649] from d.3.1.1 Papain: