Lineage for Family d.3.1.1: Papain-like

  1. Root: SCOPe 2.05
  2. 1886641Class d: Alpha and beta proteins (a+b) [53931] (381 folds)
  3. 1888974Fold d.3: Cysteine proteinases [54000] (1 superfamily)
    consists of one alpha-helix and 4 strands of antiparallel beta-sheet and contains the catalytic triad Cys-His-Asn
  4. 1888975Superfamily d.3.1: Cysteine proteinases [54001] (23 families) (S)
    the constitute families differ by insertion into and circular permutation of the common catalytic core made of one alpha-helix and 3-strands of beta-sheet
  5. 1888976Family d.3.1.1: Papain-like [54002] (26 proteins)

Proteins:

  1. 1888977(Pro)cathepsin B [54022] (3 species)
    1. 1888978Species Cow (Bos taurus) [TaxId:9913] [54025] (3 PDB entries)
    2. 1888982Species Human (Homo sapiens) [TaxId:9606] [54023] (6 PDB entries)
    3. 1888993Species Norway rat (Rattus norvegicus) [TaxId:10116] [54024] (4 PDB entries)
  2. 1889002(Pro)cathepsin K [54028] (2 species)
    1. 1889003Species Human (Homo sapiens) [TaxId:9606] [54029] (45 PDB entries)
      Uniprot P43235 116-329 ! Uniprot P43235 115-329
    2. 1889058Species Rabbit (Oryctolagus cuniculus) [TaxId:9986] [142845] (1 PDB entry)
      Uniprot P43236 115-329
  3. 1889060(Pro)cathepsin L [54026] (1 species)
  4. 1889068(Pro)cathepsin S [82566] (1 species)
  5. 1889112(Pro)cathepsin V [64202] (1 species)
  6. 1889122(Pro)cathepsin X [54031] (1 species)
  7. 1889128Actinidin [54003] (1 species)
  8. 1889132Bleomycin hydrolase [54017] (2 species)
    DNA-binding protease that has more insertions in the papain-like fold
    1. 1889133Species Baker's yeast (Saccharomyces cerevisiae), Gal6 [TaxId:4932] [54018] (9 PDB entries)
    2. 1889143Species Human (Homo sapiens) [TaxId:9606] [54019] (2 PDB entries)
  9. 1889149Caricain (protease omega) [54007] (1 species)
  10. 1889156Cathepsin C (dipeptidyl peptidase I), catalytic domain [75330] (2 species)
    1. 1889157Species Human (Homo sapiens) [TaxId:9606] [75331] (1 PDB entry)
    2. 1889159Species Norway rat (Rattus norvegicus) [TaxId:10116] [82565] (1 PDB entry)
  11. 1889161Cathepsin F [89805] (1 species)
  12. 1889165Cathepsin H [81637] (1 species)
    also contains a disulfide-bound minicathepsin H chain
  13. 1889176Chymopapain [54009] (1 species)
  14. 1889179Cruzain [54020] (1 species)
  15. 1889223Ervatamin B [89803] (1 species)
  16. 1889226Ervatamin C [102717] (1 species)
  17. 1889230Falcipain 2 [142846] (1 species)
  18. 1889243Glycyl endopeptidase [54011] (1 species)
  19. 1889246Major mite fecal allergen der p 1 [142848] (1 species)
  20. 1889253Papain [54005] (1 species)
  21. 1889281Proline-specific cysteine protease [54013] (1 species)
  22. 1889287Staphopain SspB [102721] (1 species)
  23. 1889297Staphopain StpA [54033] (1 species)
  24. 1889300Streptococcal pyrogenic exotoxin B [54035] (1 species)
  25. 1889310Vignain (bean endopeptidase) [102719] (1 species)
  26. 1889314automated matches [190264] (9 species)
    not a true protein
    1. 1889315Species Actinidia arguta [TaxId:64478] [189532] (4 PDB entries)
    2. 1889320Species Carica candamarcensis [TaxId:35926] [189214] (1 PDB entry)
    3. 1889322Species Cow (Bos taurus) [TaxId:9913] [187053] (8 PDB entries)
    4. 1889331Species Human (Homo sapiens) [TaxId:9606] [187102] (7 PDB entries)
    5. 1889344Species Jacaratia mexicana [TaxId:309130] [187452] (1 PDB entry)
    6. 1889349Species Malaria parasite (Plasmodium falciparum) [TaxId:5833] [188686] (2 PDB entries)
    7. 1889356Species Mouse (Mus musculus) [TaxId:10090] [229208] (7 PDB entries)
    8. 1889385Species Tabernaemontana divaricata [TaxId:52861] [187993] (3 PDB entries)
    9. 1889392Species Trypanosoma brucei [TaxId:31286] [188393] (2 PDB entries)

More info for Family d.3.1.1: Papain-like

Timeline for Family d.3.1.1: Papain-like: