SCOPe 2.05: Family d.2.1.2: C-type lysozyme

Lineage for Family d.2.1.2: C-type lysozyme

1. Root: SCOPe 2.05

2. Class d: Alpha and beta proteins (a+b) [53931] (381 folds)

3. Fold d.2: Lysozyme-like [53954] (1 superfamily)
   common alpha+beta motif for the active site region

4. Superfamily d.2.1: Lysozyme-like [53955] (12 families)

5. Family d.2.1.2: C-type lysozyme [53960] (3 proteins)
   automatically mapped to Pfam PF00062

Proteins:

1. alpha-Lactalbumin [53975] (6 species)
   expressed only in the lactating mammary gland, strongly binds calcium ion

   1. Species Cow (Bos taurus) [TaxId:9913] [53980] (3 PDB entries)

   2. Species Goat (Capra hircus) [TaxId:9925] [53979] (5 PDB entries)

   3. Species Guinea pig (Cavia porcellus) [TaxId:10141] [53978] (1 PDB entry)

   4. Species Human (Homo sapiens) [TaxId:9606] [53977] (3 PDB entries)

   5. Species Mouse (Mus musculus) [TaxId:10090] [69628] (12 PDB entries)

   6. Species Yellow baboon (Papio cynocephalus) [TaxId:9556] [53976] (1 PDB entry)

2. Lysozyme [53961] (14 species)
   ubiquitous in a variety of tissues and secretions

   1. Species Australian echidna (Tachyglossus aculeatus) [TaxId:9261] [53972] (1 PDB entry)

   2. Species Bobwhite quail (Colinus virginianus) [TaxId:9014] [53966] (3 PDB entries)

   3. Species Chicken (Gallus gallus) [TaxId:9031] [53962] (603 PDB entries)
      Uniprot P00698

   4. Species Dog (Canis familiaris), milk [TaxId:9615] [53971] (4 PDB entries)

   5. Species Guinea fowl (Numida meleagris) [TaxId:8996] [53964] (2 PDB entries)

   6. Species Horse (Equus caballus), milk [TaxId:9796] [53970] (1 PDB entry)

   7. Species Human (Homo sapiens) [TaxId:9606] [53969] (201 PDB entries)
      Uniprot P00695

   8. Species Japanese quail (Coturnix coturnix japonica) [TaxId:93934] [53967] (1 PDB entry)

   9. Species Mouse (Mus musculus) [TaxId:10090] [75329] (1 PDB entry)

   10. Species Pheasant (Phasianus colchicus) [TaxId:9054] [53965] (2 PDB entries)

   11. Species Rainbow trout (Oncorhynchus mykiss) [TaxId:8022] [53973] (7 PDB entries)

   12. Species Silkworm (Bombyx mori) [TaxId:7091] [64201] (1 PDB entry)

   13. Species Tasar silkworm (Antheraea mylitta) [TaxId:34739] [69627] (1 PDB entry)
       induced antibacterial protein

   14. Species Turkey (Meleagris gallopavo) [TaxId:9103] [53963] (13 PDB entries)

3. automated matches [190299] (6 species)
   not a true protein

   1. Species Chicken (Gallus gallus) [TaxId:9031] [196365] (14 PDB entries)

   2. Species Cow (Bos taurus) [TaxId:9913] [187106] (2 PDB entries)

   3. Species Dog (Canis familiaris) [TaxId:9615] [188283] (1 PDB entry)

   4. Species Human (Homo sapiens) [TaxId:9606] [188701] (6 PDB entries)

   5. Species Pelodiscus sinensis [TaxId:13735] [187773] (1 PDB entry)

   6. Species Thaumatococcus daniellii [TaxId:4621] [279113] (1 PDB entry)

More info for Family d.2.1.2: C-type lysozyme

Timeline for Family d.2.1.2: C-type lysozyme:

• Family d.2.1.2: C-type lysozyme first appeared (with stable ids) in SCOP 1.55
  
• Family d.2.1.2: C-type lysozyme appears in SCOPe 2.04
  
• Family d.2.1.2: C-type lysozyme appears in SCOPe 2.06
  
• Family d.2.1.2: C-type lysozyme appears in the current release, SCOPe 2.08