Lineage for Class d: Alpha and beta proteins (a+b)

  1. Root: SCOP 1.55
  2. 28523Class d: Alpha and beta proteins (a+b) [53931] (184 folds)

Folds:

  1. 28524d.1: Microbial ribonucleases [53932] (1 superfamily)
  2. 28759d.2: Lysozyme-like [53954] (1 superfamily)
  3. 29566d.3: Cysteine proteinases [54000] (1 superfamily)
  4. 29757d.4: His-Me finger endonucleases [54059] (1 superfamily)
  5. 29802d.5: RNase A-like [54075] (1 superfamily)
  6. 29966d.6: Prion protein domain [54097] (1 superfamily)
  7. 29994d.7: LysM domain [54105] (1 superfamily)
  8. 30001d.8: Urease, gamma-subunit [54110] (1 superfamily)
  9. 30036d.9: IL8-like [54116] (2 superfamilies)
  10. 30212d.10: DNA-binding domain [54170] (1 superfamily)
  11. 30234d.11: Penicillin-binding protein 2x (pbp-2x), c-terminal domain [54183] (1 superfamily)
  12. 30245d.12: Ribosomal proteins L23 and L15e [54188] (1 superfamily)
  13. 30255d.13: HIT-like [54196] (1 superfamily)
  14. 30320d.14: Ribosomal protein S5 domain 2-like [54210] (1 superfamily)
  15. 30383d.15: beta-Grasp (ubiquitin-like) [54235] (9 superfamilies)
  16. 30799d.16: FAD-linked reductases, C-terminal domain [54372] (1 superfamily)
  17. 30954d.17: Cystatin-like [54402] (5 superfamilies)
  18. 31152d.18: Transcriptional coactivator PC4 C-terminal domain [54446] (1 superfamily)
  19. 31165d.19: MHC antigen-recognition domain [54451] (1 superfamily)
  20. 31383d.20: Ubiquitin conjugating enzyme [54494] (1 superfamily)
  21. 31406d.21: Diaminopimelate epimerase [54505] (1 superfamily)
  22. 31413d.22: Fluorescent proteins [54510] (1 superfamily)
  23. 31456d.23: Transcriptional factor tubby, C-terminal domain [54517] (1 superfamily)
  24. 31462d.24: Pilin [54522] (1 superfamily)
  25. 31471d.25: Acidic mitochondrial matrix protein p32 [54528] (1 superfamily)
  26. 31479d.26: FKBP-like [54533] (3 superfamilies)
  27. 31571d.27: Ribosomal protein S16 [54564] (1 superfamily)
  28. 31583d.28: Ribosomal protein S19 [54569] (1 superfamily)
  29. 31596d.29: Ribosomal protein L31e [54574] (1 superfamily)
  30. 31602d.30: Allophycocyanin linker chain (domain) [54579] (1 superfamily)
  31. 31609d.31: Cdc48 domain 2-like [54584] (1 superfamily)
  32. 31626d.32: Glyoxalase/Bleomycin resistance protein/Dihydroxybiphenyl dioxygenase [54592] (1 superfamily)
  33. 31698d.33: Bacterial protein-export protein SecB [54610] (1 superfamily)
  34. 31707d.34: DNA-binding domain of Mlu1-box binding protein MBP1 [54615] (1 superfamily)
  35. 31714d.35: Heme-binding protein A (HasA) [54620] (1 superfamily)
  36. 31723d.36: Chalcone isomerase [54625] (1 superfamily)
  37. 31732d.37: CBS-domain [54630] (1 superfamily)
  38. 31742d.38: Thioesterase/thiol ester dehydrase-isomerase [54636] (1 superfamily)
  39. 31762d.39: Dynein light chain 8 (DLC8) [54647] (1 superfamily)
  40. 31776d.40: CI-2 family of serine protease inhibitors [54653] (1 superfamily)
  41. 31812d.41: alpha/beta-Hammerhead [54664] (5 superfamilies)
  42. 31889d.42: POZ domain [54694] (1 superfamily)
  43. 31952d.43: Elongation factor Ts (EF-Ts), dimerisation domain [54712] (1 superfamily)
  44. 31967d.44: Fe,Mn superoxide dismutase (SOD), C-terminal domain [54718] (1 superfamily)
  45. 32058d.45: Ribosomal protein L7/12, C-terminal domain [54735] (1 superfamily)
  46. 32069d.46: Transcription-state regulator AbrB, the N-terminal DNA recognition domain [54741] (1 superfamily)
  47. 32076d.47: Ribosomal protein L11, N-terminal domain [54746] (1 superfamily)
  48. 32082d.48: Anti-LPS factor/recA domain [54751] (2 superfamilies)
  49. 32098d.49: Signal recognition particle alu RNA binding heterodimer, SRP9/14 [54761] (1 superfamily)
  50. 32111d.50: dsRBD-like [54767] (3 superfamilies)
  51. 32153d.51: KH-domain [54790] (1 superfamily)
  52. 32181d.52: Alpha-lytic protease prodomain-like [54805] (3 superfamilies)
  53. 32222d.53: Ribosomal protein S3 C-terminal domain [54820] (1 superfamily)
  54. 32233d.54: Enolase N-terminal domain-like [54825] (1 superfamily)
  55. 32304d.55: Ribosomal protein L22 [54842] (1 superfamily)
  56. 32312d.56: GroEL-like chaperone, intermediate domain [54848] (1 superfamily)
  57. 32360d.57: DNA damage-inducible protein DinI [54856] (1 superfamily)
  58. 32366d.58: Ferredoxin-like [54861] (36 superfamilies)
  59. 33217d.59: Ribosomal protein L30p/L7e [55128] (1 superfamily)
  60. 33227d.60: Probable bacterial effector-binding domain [55135] (1 superfamily)
  61. 33243d.61: tRNA splicing product Appr>p cyclic nucleotide phosphodiesterase [55143] (1 superfamily)
  62. 33251d.62: Pepsin inhibitor-3 [55148] (1 superfamily)
  63. 33258d.63: mRNA triphosphatase CET1 [55153] (1 superfamily)
  64. 33269d.64: eIF1-like [55158] (1 superfamily)
  65. 33278d.65: Hedgehog/DD-pepidase [55165] (1 superfamily)
  66. 33288d.66: Alpha-L RNA-binding motif [55173] (1 superfamily)
  67. 33311d.67: RRF/tRNA synthetase additional domain-like [55185] (3 superfamilies)
  68. 33329d.68: IF3-like [55199] (2 superfamilies)
  69. 33366d.69: C-terminal domain of TolA [55215] (1 superfamily)
  70. 33372d.70: Yest killer toxins [55220] (1 superfamily)
  71. 33386d.71: Cell division protein MinE topological specificity domain [55228] (1 superfamily)
  72. 33393d.72: Cyanase C-terminal domain [55233] (1 superfamily)
  73. 33418d.73: RuBisCO, small subunit [55238] (1 superfamily)
  74. 33483d.74: DCoH-like [55247] (4 superfamilies)
  75. 33569d.75: MutS N-terminal domain-like [55266] (2 superfamilies)
  76. 33589d.76: GYF domain [55276] (1 superfamily)
  77. 33595d.77: Ribosomal protein L5 [55281] (1 superfamily)
  78. 33601d.78: RPB5-like RNA polymerase subunit [55286] (1 superfamily)
  79. 33616d.79: Bacillus chorismate mutase-like [55297] (4 superfamilies)
  80. 33714d.80: Tautomerase/MIF [55330] (1 superfamily)
  81. 33775d.81: Glyceraldehyde-3-phosphate dehydrogenase-like, C-terminal domain [55346] (1 superfamily)
  82. 33949d.82: N domain of copper amine oxidase-like [55382] (2 superfamilies)
  83. 33981d.83: Bactericidal permeability-increasing protein, BPI [55393] (1 superfamily)
  84. 33990d.84: Subtilisin inhibitor [55398] (1 superfamily)
  85. 34001d.85: RNA bacteriophage capsid protein [55404] (1 superfamily)
  86. 34125d.86: Translation initiation factor eIF4e [55417] (1 superfamily)
  87. 34139d.87: CO dehydrogenase flavoprotein C-domain-like [55423] (2 superfamilies)
  88. 34248d.88: SRF-like [55454] (1 superfamily)
  89. 34267d.89: The origin DNA-binding domain of SV40 T-antigen [55463] (1 superfamily)
  90. 34274d.90: NADH oxidase/flavin reductase [55468] (1 superfamily)
  91. 34301d.91: N-terminal domain of eukaryotic peptide chain release factor subunit 1, ERF1 [55480] (1 superfamily)
  92. 34307d.92: Zincin-like [55485] (2 superfamilies)
  93. 34525d.93: SH2-like [55549] (1 superfamily)
  94. 34701d.94: Histidine-containing phosphocarrier proteins (HPr) [55593] (1 superfamily)
  95. 34734d.95: Homing endonuclease-like [55603] (2 superfamilies)
  96. 34770d.96: T-fold [55619] (1 superfamily)
  97. 34875d.97: Cell cycle regulatory proteins [55636] (1 superfamily)
  98. d.98: beta-lactamase-inhibitor protein, BLIP [55647] (1 superfamily)
  99. 34908d.99: Ribosomal protein L9 C-domain [55652] (1 superfamily)
  100. 34914d.100: L9 N-domain-like [55657] (1 superfamily)
  101. 34924d.101: Polynucleotide phosporylase/guanosine pentaphospate synthase (PNPase/GPSI), domains 2 and 5 [55665] (1 superfamily)
  102. 34933d.102: Regulatory factor Nef [55670] (1 superfamily)
  103. 34944d.103: Mosquitocidal delta-endotoxin CytB [55675] (1 superfamily)
  104. 34950d.104: Class II aaRS and biotin synthetases [55680] (1 superfamily)
  105. 35063d.105: Clathrin adaptor appendage domain [55710] (1 superfamily)
  106. 35075d.106: Sterol carrier protein 2 (SCP2) [55717] (1 superfamily)
  107. 35083d.107: Ran-binding protein mog1p [55723] (1 superfamily)
  108. 35089d.108: Acyl-CoA N-acyltransferases (Nat) [55728] (1 superfamily)
  109. 35145d.109: Actin depolymerizing proteins [55752] (1 superfamily)
  110. 35199d.110: Profilin-like [55769] (3 superfamilies)
  111. 35273d.111: PR-1-like [55796] (1 superfamily)
  112. 35282d.112: IIA domain of mannitol-specific and ntr phosphotransherase EII [55803] (1 superfamily)
  113. 35295d.113: Nucleoside triphosphate pyrophosphorylase (MutT) [55810] (1 superfamily)
  114. 35302d.114: 5'-nucleotidase (syn. UDP-sugar hydrolase), C-terminal domain [55815] (1 superfamily)
  115. 35310d.115: Hypothetica protein YrdC [55820] (1 superfamily)
  116. 35317d.116: Hypothetica protein HI1434 (YbaK homologue) [55825] (1 superfamily)
  117. 35325d.117: Thymidylate synthase/dCMP hydroxymethylase [55830] (1 superfamily)
  118. 35471d.118: Bacteriophage T7 lysozyme (Zn amidase) [55845] (1 superfamily)
  119. d.119: Streptomyces lysozyme [55850] (1 superfamily)
  120. 35484d.120: Cytochrome b5 [55855] (1 superfamily)
  121. 35524d.121: DNA topoisomerase I domain [55868] (1 superfamily)
  122. 35530d.122: ATPase domain of HSP90 chaperone/DNA topoisomerase II/histidine kinase [55873] (1 superfamily)
  123. 35567d.123: Sporulation responce regulatory protein Spo0B [55889] (1 superfamily)
  124. 35578d.124: Ribonuclease Rh-like [55894] (1 superfamily)
  125. 35590d.125: Ornithine decarboxylase C-terminal domain [55903] (1 superfamily)
  126. 35598d.126: Pentein, beta/alpha-propeller [55908] (1 superfamily)
  127. 35625d.127: Creatinase/aminopeptidase [55919] (1 superfamily)
  128. 35661d.128: Glutamine synthase/guanidino kinase catalytic domain [55930] (1 superfamily)
  129. 35720d.129: TBP-like [55944] (3 superfamilies)
  130. 35862d.130: S-adenosylmethionine synthetase [55972] (1 superfamily)
  131. 35898d.131: DNA clamp [55978] (1 superfamily)
  132. 35957d.132: Mitochondrial processing peptidase, MPP [55993] (1 superfamily)
  133. 35980d.133: Molybdemum cofactor-binding domain [56002] (1 superfamily)
  134. 36002d.134: Sulfite reductase hemoprotein (SiRHP), domains 2 and 4 [56013] (1 superfamily)
  135. 36031d.135: The spindle assembly checkpoint protein mad2 [56018] (1 superfamily)
  136. 36037d.136: Phospholipase D/nuclease [56023] (1 superfamily)
  137. 36044d.137: Monooxygenase (hydroxylase) regulatory protein [56028] (1 superfamily)
  138. 36055d.138: B3/B4 domain of PheRS, PheT [56036] (1 superfamily)
  139. 36064d.139: Aminoimidazole ribonucleotide synthetase (PurM) C-terminal domain [56041] (1 superfamily)
  140. 36073d.140: Ribosomal protein S8 [56046] (1 superfamily)
  141. 36089d.141: Ribosomal protein L6 [56052] (1 superfamily)
  142. 36099d.142: ATP-grasp [56058] (2 superfamilies)
  143. 36257d.143: SAICAR synthase-like [56103] (1 superfamily)
  144. 36268d.144: Protein kinase-like (PK-like) [56111] (1 superfamily)
  145. 36457d.145: FAD-binding domain [56175] (1 superfamily)
  146. 36518d.146: Uridine diphospho-N-Acetylenolpyruvylglucosamine reductase, MurB, C-terminal domain [56193] (1 superfamily)
  147. 36527d.147: Methenyltetrahydromethanopterin cyclohydrolase [56198] (1 superfamily)
  148. 36533d.148: Ubiquitin-protein ligase E3a, Hect catalytic domain (E6ap) [56203] (1 superfamily)
  149. 36544d.149: Nitrile hydratase alpha chain [56208] (1 superfamily)
  150. 36555d.150: 4'-Phosphopantetheinyl transferase SFP [56213] (1 superfamily)
  151. 36561d.151: DNase I-like [56218] (1 superfamily)
  152. 36585d.152: Aldehyde ferredoxin oxidoreductase, N-terminal domain [56227] (1 superfamily)
  153. 36602d.153: N-terminal nucleophile aminohydrolases (Ntn hydrolases) [56234] (1 superfamily)
  154. 36849d.154: L-aminopeptidase D-Ala-esterase/amidase [56265] (1 superfamily)
  155. 36860d.155: Histidine decarboxylase [56270] (1 superfamily)
  156. 36868d.156: S-adenosylmethionine decarboxylase [56275] (1 superfamily)
  157. 36875d.157: Metallo-hydrolase/oxidoreductase [56280] (1 superfamily)
  158. 36921d.158: Protein serine/threonine phosphatase 2C [56294] (1 superfamily)
  159. 36927d.159: Metallo-dependent phosphatases [56299] (1 superfamily)
  160. 36966d.160: Nitrilase/N-carbamyl-D-aminoacid amidohydrolase [56316] (1 superfamily)
  161. 36973d.161: Anthranilate synthase aminodeoxyisochorismate synthase/lyase subunit TrpE [56321] (1 superfamily)
  162. 36979d.162: Lactate & malate dehydrogenases, C-terminal domain [56326] (1 superfamily)
  163. 37061d.163: DNA breaking-rejoining enzymes [56348] (1 superfamily)
  164. 37104d.164: SMAD MH1 domain [56365] (1 superfamily)
  165. 37111d.165: Ribosome inactivating proteins (RIP) [56370] (1 superfamily)
  166. 37191d.166: ADP-ribosylation [56398] (1 superfamily)
  167. 37264d.167: Peptide deformylase [56419] (1 superfamily)
  168. 37295d.168: Succinate dehydrogenase/fumarate reductase catalytic domain [56424] (1 superfamily)
  169. 37323d.169: C-type lectin-like [56435] (1 superfamily)
  170. 37502d.170: SRCR-like [56486] (2 superfamilies)
  171. 37513d.171: Fibrinogen C-terminal domains [56495] (1 superfamily)
  172. 37557d.172: gp120 core [56501] (1 superfamily)
  173. 37565d.173: Methionine synthase (activation domain) [56506] (1 superfamily)
  174. 37571d.174: Nitric oxide (NO) synthase oxygenase domain [56511] (1 superfamily)
  175. 37642d.175: Penicillin-binding protein 2x (pbp-2x), N-terminal domain [56518] (1 superfamily)
  176. 37650d.176: Sulfite oxidase, middle catalytic domain [56523] (1 superfamily)
  177. 37657d.177: Fumarylacetoacetate hydrolase, FAH [56528] (1 superfamily)
  178. 37670d.178: Aromatic aminoacid monoxygenases, catalytic and oligomerization domains [56533] (1 superfamily)
  179. 37690d.179: Substrate-binding domain of HMG-CoA reductase [56541] (1 superfamily)
  180. d.180: Conserved core of transcriptional regulatory protein vp16 [56547] (1 superfamily)
  181. 37718d.181: Insert subdomain of RNA polymerase alpha subunit N-terminal domain [56552] (1 superfamily)
  182. 37727d.182: Baseplate structural protein gp11 [56557] (1 superfamily)
  183. 37735d.183: Major capsid protein gp5 [56562] (1 superfamily)
  184. 37747d.184: Non-globular alpha beta subunits of globular proteins [56567] (1 superfamily)

More info for Class d: Alpha and beta proteins (a+b)

Timeline for Class d: Alpha and beta proteins (a+b):