Lineage for Family c.94.1.1: Phosphate binding protein-like

  1. Root: SCOPe 2.02
  2. 1143363Class c: Alpha and beta proteins (a/b) [51349] (147 folds)
  3. 1185373Fold c.94: Periplasmic binding protein-like II [53849] (1 superfamily)
    consists of two similar intertwined domain with 3 layers (a/b/a) each: duplication
    mixed beta-sheet of 5 strands, order 21354; strand 5 is antiparallel to the rest
  4. 1185374Superfamily c.94.1: Periplasmic binding protein-like II [53850] (4 families) (S)
    Similar in architecture to the superfamily I but partly differs in topology
  5. 1185375Family c.94.1.1: Phosphate binding protein-like [53851] (41 proteins)

Proteins:

  1. 1185376ABC transporter, periplasmic substrate-binding protein VCA0807 [117747] (1 species)
  2. 1185386Alginate-binding periplasmic protein AlgQ1 [142808] (1 species)
  3. 1185389Alginate-binding periplasmic protein AlgQ2 [69624] (1 species)
  4. 1185394ATP phosphoribosyltransferase (ATP-PRTase, HisG), catalytic domain [82559] (5 species)
    there is an additional C-terminal allosteric domain in some species
    1. 1185395Species Escherichia coli [TaxId:562] [102698] (2 PDB entries)
    2. 1185398Species Lactococcus lactis [TaxId:1358] [142804] (2 PDB entries)
      Uniprot Q02129 1-204
    3. 1185407Species Mycobacterium tuberculosis [TaxId:1773] [82560] (2 PDB entries)
    4. 1185410Species Thermotoga maritima [TaxId:2336] [102699] (3 PDB entries)
      Uniprot Q9X0D2
    5. 1185419Species Thermus thermophilus [TaxId:274] [142805] (1 PDB entry)
      Uniprot Q5SM15 1-206
  5. 1185421Cofactor-binding fragment of LysR-type protein CysB [53886] (1 species)
  6. 1185424D-maltodextrin-binding protein, MBP [53862] (5 species)
    contains a few additional helices in the C-terminal extension; homologous to thiaminase I
    1. 1185425Species Alicyclobacillus acidocaldarius [TaxId:405212] [102690] (3 PDB entries)
    2. 1185431Species Escherichia coli K-12 [TaxId:83333] [159806] (1 PDB entry)
    3. 1185433Species Escherichia coli [TaxId:562] [53863] (47 PDB entries)
      Uniprot P02928
    4. 1185491Species Pyrococcus furiosus [TaxId:2261] [53864] (1 PDB entry)
    5. 1185493Species Thermococcus litoralis [TaxId:2265] [64191] (1 PDB entry)
      trehalose maltose-binding protein
  7. 1185495Dipeptide-binding protein [53870] (1 species)
    similar domain organization to oligopeptide-binding protein, OPPA
  8. 1185502Ferric-binding protein FbpA [53867] (7 species)
    1. 1185503Species Bordetella pertussis [TaxId:520] [117745] (1 PDB entry)
      Uniprot Q7VXW9 31-349
    2. 1185505Species Campylobacter jejuni [TaxId:197] [117744] (2 PDB entries)
      Uniprot Q9PIV4 17-334
    3. 1185509Species Haemophilus influenzae [TaxId:727] [53868] (12 PDB entries)
    4. 1185522Species Mannheimia haemolytica [TaxId:75985] [102691] (3 PDB entries)
      Uniprot Q9Z4N6
    5. 1185526Species Neisseria gonorrhoeae [TaxId:485] [53869] (5 PDB entries)
      Uniprot Q50964 23-331
    6. 1185556Species Serratia marcescens, SfuA [TaxId:615] [117743] (1 PDB entry)
      Uniprot P21408 32-338
    7. 1185558Species Yersinia enterocolitica, YfuA [TaxId:630] [117742] (1 PDB entry)
      Uniprot Q56925 28-338
  9. 1185560Glutamate receptor ligand binding core [53881] (5 species)
    1. 1185561Species Human (Homo sapiens) [TaxId:9606] [189807] (3 PDB entries)
    2. 1185569Species Rat (Rattus norvegicus), GluR2 [TaxId:10116] [53882] (104 PDB entries)
    3. 1185811Species Rat (Rattus norvegicus), GluR5 [TaxId:10116] [142802] (2 PDB entries)
      Uniprot P22756 429-546,667-799! Uniprot P22756 433-544,682-815
    4. 1185814Species Rat (Rattus norvegicus), GluR6 [TaxId:10116] [142801] (2 PDB entries)
      Uniprot P42260 421-544,668-804! Uniprot P42260 429-544,667-806
    5. 1185821Species Synechocystis sp., GluR0 [TaxId:1143] [64192] (3 PDB entries)
  10. 1185825Glutamine-binding protein [53879] (1 species)
  11. 1185830Glycine betaine-binding periplasmic protein ProX [102702] (1 species)
  12. 1185834Histidine-binding protein [53872] (2 species)
    1. 1185835Species Escherichia coli [TaxId:562] [53873] (1 PDB entry)
    2. 1185838Species Salmonella typhimurium [TaxId:90371] [53874] (1 PDB entry)
  13. 1185840Hydrogen peroxide-inducible genes LysR-type activator OxyR, regulatory domain [64193] (1 species)
  14. 1185845Hypothetical protein AF1704 [142810] (1 species)
    member of Pfam PF02642 (DUF191)
  15. 1185848Hypothetical protein DR0370 [159814] (1 species)
  16. 1185858Hypothetical protein SCo4506 [159810] (1 species)
  17. 1185864Hypothetical protein TTHA1568 [142806] (1 species)
    member of Pfam PF02642 (DUF191)
  18. 1185868Hypothetical protein YhfZ [159812] (1 species)
  19. 1185872Hypothetical protein YliB [102692] (1 species)
    similar domain organization to oligo- and dipeptide-binding protein
  20. 1185876Lysine-,arginine-,ornithine-binding (LAO) protein [53856] (1 species)
  21. 1185883LysR-type regulatory protein Cbl [142816] (1 species)
  22. 1185889LysR-type regulatory protein CbnR [89789] (1 species)
  23. 1185897LysR-type regulatory protein DntR [110748] (1 species)
  24. 1185903Molybdate-binding protein, ModA [53883] (3 species)
    1. 1185904Species Archaeoglobus fulgidus [TaxId:2234] [159807] (3 PDB entries)
      Uniprot O30142 32-342
    2. 1185909Species Azotobacter vinelandii [TaxId:354] [53885] (1 PDB entry)
    3. 1185911Species Escherichia coli [TaxId:562] [53884] (2 PDB entries)
  25. 1185914N-methyl-D-aspartate receptor subunit 1 [89787] (2 species)
    1. 1185915Species Norway rat (Rattus norvegicus) [TaxId:10116] [89788] (8 PDB entries)
    2. 1185926Species Rat (Rattus norvegicus), subtype 2A [TaxId:10116] [142803] (1 PDB entry)
      Uniprot Q00959 404-539,661-801
  26. 1185928Nickel-binding periplasmic protein NikA [102694] (1 species)
    similar domain organization to oligo- and dipeptide-binding protein
  27. 1185960Oligo-peptide binding protein (OPPA) [53852] (3 species)
    contains an additional alpha+beta domain inserted in the N-terminal domain
    1. 1185961Species Bacillus subtilis [TaxId:1423] [142799] (1 PDB entry)
      Uniprot P42061 40-543
    2. 1185963Species Salmonella typhimurium [TaxId:90371] [53853] (32 PDB entries)
    3. 1185997Species Thermotoga maritima [TaxId:2336] [142800] (1 PDB entry)
      Uniprot Q9X0V0 23-557
      TM1223
  28. 1186000Osmoprotection protein ProX [110750] (1 species)
    functionally related to the bacterial ProX
  29. 1186012Phosphate-binding protein [53860] (4 species)
    1. 1186013Species Escherichia coli [TaxId:562] [53861] (13 PDB entries)
    2. 1186028Species Mycobacterium tuberculosis [TaxId:1773] [110747] (1 PDB entry)
      Uniprot P15712
    3. 1186031Species Pseudomonas fluorescens [TaxId:216595] [189064] (1 PDB entry)
    4. 1186033Species Pseudomonas fluorescens [TaxId:294] [189065] (4 PDB entries)
  30. 1186038Porphobilinogen deaminase (hydroxymethylbilane synthase), N-terminal domain [53854] (1 species)
  31. 1186045Prephenate dehydratase [159808] (1 species)
  32. 1186049Probable LysR-type transcriptional regulator PA0477 [142812] (1 species)
  33. 1186055PstS-like phosphate-binding protein [159816] (1 species)
  34. 1186058Putative amino-acid transporter CjaA [142814] (1 species)
  35. 1186062Putative GluR0 ligand binding core [102696] (1 species)
  36. 1186066Putative lipoprotein (NlpA family) [102700] (2 species)
    aka PG110, TpN32
    1. 1186067Species Staphylococcus aureus [TaxId:1280] [102701] (1 PDB entry)
    2. 1186069Species Treponema pallidum [TaxId:160] [117746] (1 PDB entry)
      Uniprot O07950 28-267
  37. 1186071Putrescine receptor (PotF) [53877] (1 species)
  38. 1186077Spermidine/putrescine-binding protein PotD [53875] (1 species)
  39. 1186084Sulphate-binding protein [53858] (1 species)
  40. 1186087Thiaminase I [53865] (1 species)
    contains a few additional helices in the C-terminal extension; homologous to MBP
  41. 1186093automated matches [190140] (9 species)
    not a true protein
    1. 1186094Species Bordetella pertussis [TaxId:257313] [187275] (2 PDB entries)
    2. 1186097Species Burkholderia sp. [TaxId:233098] [190010] (3 PDB entries)
    3. 1186108Species Escherichia coli K-12 [TaxId:83333] [189211] (10 PDB entries)
    4. 1186136Species Escherichia coli [TaxId:562] [189978] (3 PDB entries)
    5. 1186141Species Human (Homo sapiens) [TaxId:9606] [189406] (2 PDB entries)
    6. 1186146Species Norway rat (Rattus norvegicus) [TaxId:10116] [189278] (22 PDB entries)
    7. 1186180Species Pseudomonas aeruginosa [TaxId:287] [195694] (2 PDB entries)
    8. 1186185Species Sphingomonas sp. [TaxId:90322] [186866] (5 PDB entries)
    9. 1186192Species Yersinia pestis [TaxId:214092] [188272] (2 PDB entries)

More info for Family c.94.1.1: Phosphate binding protein-like

Timeline for Family c.94.1.1: Phosphate binding protein-like: