Class c: Alpha and beta proteins (a/b) [51349] (147 folds) |
Fold c.94: Periplasmic binding protein-like II [53849] (1 superfamily) consists of two similar intertwined domain with 3 layers (a/b/a) each: duplication mixed beta-sheet of 5 strands, order 21354; strand 5 is antiparallel to the rest |
Superfamily c.94.1: Periplasmic binding protein-like II [53850] (4 families) Similar in architecture to the superfamily I but partly differs in topology |
Family c.94.1.1: Phosphate binding protein-like [53851] (41 proteins) |
ABC transporter, periplasmic substrate-binding protein VCA0807 [117747] (1 species) |
Species Vibrio cholerae [TaxId:666] [117748] (1 PDB entry) Uniprot Q9KLD9 26-274 |
Alginate-binding periplasmic protein AlgQ1 [142808] (1 species) |
Species Sphingomonas sp. [TaxId:28214] [142809] (1 PDB entry) Uniprot Q9KWT6 25-514 |
Alginate-binding periplasmic protein AlgQ2 [69624] (1 species) |
Species Sphingomonas sp. [TaxId:28214] [69625] (2 PDB entries) |
ATP phosphoribosyltransferase (ATP-PRTase, HisG), catalytic domain [82559] (5 species) there is an additional C-terminal allosteric domain in some species |
Species Escherichia coli [TaxId:562] [102698] (2 PDB entries) |
Species Lactococcus lactis [TaxId:1358] [142804] (2 PDB entries) Uniprot Q02129 1-204 |
Species Mycobacterium tuberculosis [TaxId:1773] [82560] (2 PDB entries) |
Species Thermotoga maritima [TaxId:2336] [102699] (3 PDB entries) Uniprot Q9X0D2 |
Species Thermus thermophilus [TaxId:274] [142805] (1 PDB entry) Uniprot Q5SM15 1-206 |
Cofactor-binding fragment of LysR-type protein CysB [53886] (1 species) |
Species Klebsiella aerogenes [TaxId:28451] [53887] (1 PDB entry) |
D-maltodextrin-binding protein, MBP [53862] (5 species) contains a few additional helices in the C-terminal extension; homologous to thiaminase I |
Species Alicyclobacillus acidocaldarius [TaxId:405212] [102690] (3 PDB entries) |
Species Escherichia coli K-12 [TaxId:83333] [159806] (1 PDB entry) |
Species Escherichia coli [TaxId:562] [53863] (47 PDB entries) Uniprot P02928 |
Species Pyrococcus furiosus [TaxId:2261] [53864] (1 PDB entry) |
Species Thermococcus litoralis [TaxId:2265] [64191] (1 PDB entry) trehalose maltose-binding protein |
Dipeptide-binding protein [53870] (1 species) similar domain organization to oligopeptide-binding protein, OPPA |
Species Escherichia coli [TaxId:562] [53871] (2 PDB entries) |
Ferric-binding protein FbpA [53867] (7 species) |
Species Bordetella pertussis [TaxId:520] [117745] (1 PDB entry) Uniprot Q7VXW9 31-349 |
Species Campylobacter jejuni [TaxId:197] [117744] (2 PDB entries) Uniprot Q9PIV4 17-334 |
Species Haemophilus influenzae [TaxId:727] [53868] (12 PDB entries) |
Species Mannheimia haemolytica [TaxId:75985] [102691] (3 PDB entries) Uniprot Q9Z4N6 |
Species Neisseria gonorrhoeae [TaxId:485] [53869] (5 PDB entries) Uniprot Q50964 23-331 |
Species Serratia marcescens, SfuA [TaxId:615] [117743] (1 PDB entry) Uniprot P21408 32-338 |
Species Yersinia enterocolitica, YfuA [TaxId:630] [117742] (1 PDB entry) Uniprot Q56925 28-338 |
Glutamate receptor ligand binding core [53881] (5 species) |
Species Human (Homo sapiens) [TaxId:9606] [189807] (3 PDB entries) |
Species Rat (Rattus norvegicus), GluR2 [TaxId:10116] [53882] (104 PDB entries) |
Species Rat (Rattus norvegicus), GluR5 [TaxId:10116] [142802] (2 PDB entries) Uniprot P22756 429-546,667-799! Uniprot P22756 433-544,682-815 |
Species Rat (Rattus norvegicus), GluR6 [TaxId:10116] [142801] (2 PDB entries) Uniprot P42260 421-544,668-804! Uniprot P42260 429-544,667-806 |
Species Synechocystis sp., GluR0 [TaxId:1143] [64192] (3 PDB entries) |
Glutamine-binding protein [53879] (1 species) |
Species Escherichia coli [TaxId:562] [53880] (2 PDB entries) |
Glycine betaine-binding periplasmic protein ProX [102702] (1 species) |
Species Escherichia coli [TaxId:562] [102703] (2 PDB entries) |
Histidine-binding protein [53872] (2 species) |
Species Escherichia coli [TaxId:562] [53873] (1 PDB entry) |
Species Salmonella typhimurium [TaxId:90371] [53874] (1 PDB entry) |
Hydrogen peroxide-inducible genes LysR-type activator OxyR, regulatory domain [64193] (1 species) |
Species Escherichia coli [TaxId:562] [64194] (2 PDB entries) |
Hypothetical protein AF1704 [142810] (1 species) member of Pfam PF02642 (DUF191) |
Species Archaeoglobus fulgidus [TaxId:2234] [142811] (1 PDB entry) Uniprot O28569 2-261 |
Hypothetical protein DR0370 [159814] (1 species) |
Species Deinococcus radiodurans [TaxId:1299] [159815] (1 PDB entry) Uniprot Q9RXE3 14-285 |
Hypothetical protein SCo4506 [159810] (1 species) |
Species Streptomyces coelicolor [TaxId:1902] [159811] (1 PDB entry) Uniprot Q9L0T8 6-282 |
Hypothetical protein TTHA1568 [142806] (1 species) member of Pfam PF02642 (DUF191) |
Species Thermus thermophilus [TaxId:274] [142807] (2 PDB entries) Uniprot Q5SI12 3-272 |
Hypothetical protein YhfZ [159812] (1 species) |
Species Shigella flexneri [TaxId:623] [159813] (1 PDB entry) Uniprot Q83JA6 1-228 |
Hypothetical protein YliB [102692] (1 species) similar domain organization to oligo- and dipeptide-binding protein |
Species Escherichia coli [TaxId:562] [102693] (1 PDB entry) |
Lysine-,arginine-,ornithine-binding (LAO) protein [53856] (1 species) |
Species Salmonella typhimurium [TaxId:90371] [53857] (5 PDB entries) |
LysR-type regulatory protein Cbl [142816] (1 species) |
Species Escherichia coli [TaxId:562] [142817] (1 PDB entry) Uniprot Q47083 88-307 |
LysR-type regulatory protein CbnR [89789] (1 species) |
Species Ralstonia eutropha [TaxId:106590] [89790] (2 PDB entries) |
LysR-type regulatory protein DntR [110748] (1 species) |
Species Burkholderia sp. [TaxId:36773] [110749] (2 PDB entries) Uniprot Q7WT50 75-301 |
Molybdate-binding protein, ModA [53883] (3 species) |
Species Archaeoglobus fulgidus [TaxId:2234] [159807] (3 PDB entries) Uniprot O30142 32-342 |
Species Azotobacter vinelandii [TaxId:354] [53885] (1 PDB entry) |
Species Escherichia coli [TaxId:562] [53884] (2 PDB entries) |
N-methyl-D-aspartate receptor subunit 1 [89787] (2 species) |
Species Norway rat (Rattus norvegicus) [TaxId:10116] [89788] (8 PDB entries) |
Species Rat (Rattus norvegicus), subtype 2A [TaxId:10116] [142803] (1 PDB entry) Uniprot Q00959 404-539,661-801 |
Nickel-binding periplasmic protein NikA [102694] (1 species) similar domain organization to oligo- and dipeptide-binding protein |
Species Escherichia coli [TaxId:562] [102695] (15 PDB entries) |
Oligo-peptide binding protein (OPPA) [53852] (3 species) contains an additional alpha+beta domain inserted in the N-terminal domain |
Species Bacillus subtilis [TaxId:1423] [142799] (1 PDB entry) Uniprot P42061 40-543 |
Species Salmonella typhimurium [TaxId:90371] [53853] (32 PDB entries) |
Species Thermotoga maritima [TaxId:2336] [142800] (1 PDB entry) Uniprot Q9X0V0 23-557 TM1223 |
Osmoprotection protein ProX [110750] (1 species) functionally related to the bacterial ProX |
Species Archaeoglobus fulgidus [TaxId:2234] [110751] (5 PDB entries) Uniprot O29280 # AF0982 |
Phosphate-binding protein [53860] (4 species) |
Species Escherichia coli [TaxId:562] [53861] (13 PDB entries) |
Species Mycobacterium tuberculosis [TaxId:1773] [110747] (1 PDB entry) Uniprot P15712 |
Species Pseudomonas fluorescens [TaxId:216595] [189064] (1 PDB entry) |
Species Pseudomonas fluorescens [TaxId:294] [189065] (4 PDB entries) |
Porphobilinogen deaminase (hydroxymethylbilane synthase), N-terminal domain [53854] (1 species) |
Species Escherichia coli [TaxId:562] [53855] (5 PDB entries) |
Prephenate dehydratase [159808] (1 species) |
Species Staphylococcus aureus [TaxId:1280] [159809] (1 PDB entry) Uniprot Q99SX2 1-184 |
Probable LysR-type transcriptional regulator PA0477 [142812] (1 species) |
Species Pseudomonas aeruginosa [TaxId:287] [142813] (1 PDB entry) Uniprot Q9I641 92-303 |
PstS-like phosphate-binding protein [159816] (1 species) |
Species Human (Homo sapiens) [TaxId:9606] [159817] (1 PDB entry) Uniprot P85173 1-376 |
Putative amino-acid transporter CjaA [142814] (1 species) |
Species Campylobacter jejuni [TaxId:197] [142815] (1 PDB entry) Uniprot Q0P9S0 29-276 |
Putative GluR0 ligand binding core [102696] (1 species) |
Species Thermus thermophilus [TaxId:274] [102697] (2 PDB entries) |
Putative lipoprotein (NlpA family) [102700] (2 species) aka PG110, TpN32 |
Species Staphylococcus aureus [TaxId:1280] [102701] (1 PDB entry) |
Species Treponema pallidum [TaxId:160] [117746] (1 PDB entry) Uniprot O07950 28-267 |
Putrescine receptor (PotF) [53877] (1 species) |
Species Escherichia coli [TaxId:562] [53878] (1 PDB entry) |
Spermidine/putrescine-binding protein PotD [53875] (1 species) |
Species Escherichia coli [TaxId:562] [53876] (2 PDB entries) |
Sulphate-binding protein [53858] (1 species) |
Species Salmonella typhimurium [TaxId:90371] [53859] (1 PDB entry) |
Thiaminase I [53865] (1 species) contains a few additional helices in the C-terminal extension; homologous to MBP |
Species Paenibacillus thiaminolyticus [TaxId:49283] [53866] (3 PDB entries) |
automated matches [190140] (9 species) not a true protein |
Species Bordetella pertussis [TaxId:257313] [187275] (2 PDB entries) |
Species Burkholderia sp. [TaxId:233098] [190010] (3 PDB entries) |
Species Escherichia coli K-12 [TaxId:83333] [189211] (10 PDB entries) |
Species Escherichia coli [TaxId:562] [189978] (3 PDB entries) |
Species Human (Homo sapiens) [TaxId:9606] [189406] (2 PDB entries) |
Species Norway rat (Rattus norvegicus) [TaxId:10116] [189278] (22 PDB entries) |
Species Pseudomonas aeruginosa [TaxId:287] [195694] (2 PDB entries) |
Species Sphingomonas sp. [TaxId:90322] [186866] (5 PDB entries) |
Species Yersinia pestis [TaxId:214092] [188272] (2 PDB entries) |
Timeline for Family c.94.1.1: Phosphate binding protein-like: