SCOP 1.73: Family c.94.1.1: Phosphate binding protein-like

Lineage for Family c.94.1.1: Phosphate binding protein-like

1. Root: SCOP 1.73

2. Class c: Alpha and beta proteins (a/b) [51349] (141 folds)

3. Fold c.94: Periplasmic binding protein-like II [53849] (1 superfamily)
   consists of two similar intertwined domain with 3 layers (a/b/a) each: duplication
   mixed beta-sheet of 5 strands, order 21354; strand 5 is antiparallel to the rest

4. Superfamily c.94.1: Periplasmic binding protein-like II [53850] (2 families)
   Similar in architecture to the superfamily I but partly differs in topology

5. Family c.94.1.1: Phosphate binding protein-like [53851] (35 proteins)

Proteins:

1. ABC transporter, periplasmic substrate-binding protein VCA0807 [117747] (1 species)

   • Species Vibrio cholerae [TaxId:666] [117748] (1 PDB entry)

2. Alginate-binding periplasmic protein AlgQ1 [142808] (1 species)

   • Species Sphingomonas sp. [TaxId:28214] [142809] (3 PDB entries)

3. Alginate-binding periplasmic protein AlgQ2 [69624] (1 species)

   • Species Sphingomonas sp. [TaxId:28214] [69625] (2 PDB entries)

4. ATP phosphoribosyltransferase (ATP-PRTase, HisG), catalytic domain [82559] (5 species)
   there is an additional C-terminal allosteric domain in some species

   1. Species Escherichia coli [TaxId:562] [102698] (2 PDB entries)

   2. Species Lactococcus lactis [TaxId:1358] [142804] (2 PDB entries)

   3. Species Mycobacterium tuberculosis [TaxId:1773] [82560] (2 PDB entries)

   4. Species Thermotoga maritima [TaxId:2336] [102699] (3 PDB entries)

   5. Species Thermus thermophilus [TaxId:274] [142805] (1 PDB entry)

5. Cofactor-binding fragment of LysR-type protein CysB [53886] (1 species)

   • Species Klebsiella aerogenes [TaxId:28451] [53887] (1 PDB entry)

6. D-maltodextrin-binding protein, MBP [53862] (4 species)
   contains a few additional helices in the C-terminal extension; homologous to thiaminase I

   1. Species Alicyclobacillus acidocaldarius [TaxId:405212] [102690] (3 PDB entries)

   2. Species Archaeon Pyrococcus furiosus [TaxId:2261] [53864] (1 PDB entry)

   3. Species Archaeon Thermococcus litoralis [TaxId:2265] [64191] (1 PDB entry)
      trehalose maltose-binding protein

   4. Species Escherichia coli [TaxId:562] [53863] (45 PDB entries)

7. Dipeptide-binding protein [53870] (1 species)
   similar domain organization to oligopeptide-binding protein, OPPA

   • Species Escherichia coli [TaxId:562] [53871] (2 PDB entries)

8. Ferric-binding protein FbpA [53867] (7 species)

   1. Species Bordetella pertussis [TaxId:520] [117745] (1 PDB entry)

   2. Species Campylobacter jejuni [TaxId:197] [117744] (1 PDB entry)

   3. Species Haemophilus influenzae [TaxId:727] [53868] (5 PDB entries)

   4. Species Mannheimia haemolytica [TaxId:75985] [102691] (3 PDB entries)

   5. Species Neisseria gonorrhoeae [TaxId:485] [53869] (4 PDB entries)

   6. Species Serratia marcescens, SfuA [TaxId:615] [117743] (1 PDB entry)

   7. Species Yersinia enterocolitica, YfuA [TaxId:630] [117742] (1 PDB entry)

9. Glutamate receptor ligand binding core [53881] (4 species)

   1. Species Rat (Rattus norvegicus), GluR2 [TaxId:10116] [53882] (53 PDB entries)

   2. Species Rat (Rattus norvegicus), GluR5 [TaxId:10116] [142802] (6 PDB entries)

   3. Species Rat (Rattus norvegicus), GluR6 [TaxId:10116] [142801] (6 PDB entries)

   4. Species Synechocystis sp., GluR0 [TaxId:1143] [64192] (3 PDB entries)

10. Glutamine-binding protein [53879] (1 species)

    • Species Escherichia coli [TaxId:562] [53880] (2 PDB entries)

11. Glycine betaine-binding periplasmic protein ProX [102702] (1 species)

    • Species Escherichia coli [TaxId:562] [102703] (2 PDB entries)

12. Histidine-binding protein [53872] (2 species)

    1. Species Escherichia coli [TaxId:562] [53873] (1 PDB entry)

    2. Species Salmonella typhimurium [TaxId:90371] [53874] (1 PDB entry)

13. Hydrogen peroxide-inducible genes LysR-type activator OxyR, regulatory domain [64193] (1 species)

    • Species Escherichia coli [TaxId:562] [64194] (2 PDB entries)

14. Hypothetical protein AF1704 [142810] (1 species)
    member of Pfam PF02642 (DUF191)

    • Species Archaeoglobus fulgidus [TaxId:2234] [142811] (1 PDB entry)

15. Hypothetical protein TTHA1568 [142806] (1 species)
    member of Pfam PF02642 (DUF191)

    • Species Thermus thermophilus [TaxId:274] [142807] (2 PDB entries)

16. Hypothetical protein YliB [102692] (1 species)
    similar domain organization to oligo- and dipeptide-binding protein

    • Species Escherichia coli [TaxId:562] [102693] (1 PDB entry)

17. Lysine-,arginine-,ornithine-binding (LAO) protein [53856] (1 species)

    • Species Salmonella typhimurium [TaxId:90371] [53857] (5 PDB entries)

18. LysR-type regulatory protein Cbl [142816] (1 species)

    • Species Escherichia coli [TaxId:562] [142817] (1 PDB entry)

19. LysR-type regulatory protein CbnR [89789] (1 species)

    • Species Ralstonia eutropha [TaxId:106590] [89790] (2 PDB entries)

20. LysR-type regulatory protein DntR [110748] (1 species)

    • Species Burkholderia sp. [TaxId:36773] [110749] (2 PDB entries)

21. Molybdate-binding protein, ModA [53883] (2 species)

    1. Species Azotobacter vinelandii [TaxId:354] [53885] (1 PDB entry)

    2. Species Escherichia coli [TaxId:562] [53884] (2 PDB entries)

22. N-methyl-D-aspartate receptor subunit 1 [89787] (2 species)

    1. Species Rat (Rattus norvegicus) [TaxId:10116] [89788] (8 PDB entries)

    2. Species Rat (Rattus norvegicus), subtype 2A [TaxId:10116] [142803] (2 PDB entries)

23. Nickel-binding periplasmic protein NikA [102694] (1 species)
    similar domain organization to oligo- and dipeptide-binding protein

    • Species Escherichia coli [TaxId:562] [102695] (3 PDB entries)

24. Oligo-peptide binding protein (OPPA) [53852] (3 species)
    contains an additional alpha+beta domain inserted in the N-terminal domain

    1. Species Bacillus subtilis [TaxId:1423] [142799] (1 PDB entry)

    2. Species Salmonella typhimurium [TaxId:90371] [53853] (32 PDB entries)

    3. Species Thermotoga maritima [TaxId:2336] [142800] (1 PDB entry)
       TM1223

25. Osmoprotection protein ProX [110750] (1 species)
    functionally related to the bacterial ProX

    • Species Archaeoglobus fulgidus [TaxId:2234] [110751] (4 PDB entries)

26. Phosphate-binding protein [53860] (2 species)

    1. Species Escherichia coli [TaxId:562] [53861] (13 PDB entries)

    2. Species Mycobacterium tuberculosis [TaxId:1773] [110747] (1 PDB entry)

27. Porphobilinogen deaminase (hydroxymethylbilane synthase), N-terminal domain [53854] (1 species)

    • Species Escherichia coli [TaxId:562] [53855] (5 PDB entries)

28. Probable LysR-type transcriptional regulator PA0477 [142812] (1 species)

    • Species Pseudomonas aeruginosa [TaxId:287] [142813] (1 PDB entry)

29. Putative amino-acid transporter CjaA [142814] (1 species)

    • Species Campylobacter jejuni [TaxId:197] [142815] (1 PDB entry)

30. Putative GluR0 ligand binding core [102696] (1 species)

    • Species Thermus thermophilus [TaxId:274] [102697] (2 PDB entries)

31. Putative lipoprotein (NlpA family) [102700] (2 species)
    aka PG110, TpN32

    1. Species Staphylococcus aureus [TaxId:1280] [102701] (1 PDB entry)

    2. Species Treponema pallidum [TaxId:160] [117746] (1 PDB entry)

32. Putrescine receptor (PotF) [53877] (1 species)

    • Species Escherichia coli [TaxId:562] [53878] (1 PDB entry)

33. Spermidine/putrescine-binding protein PotD [53875] (1 species)

    • Species Escherichia coli [TaxId:562] [53876] (2 PDB entries)

34. Sulphate-binding protein [53858] (1 species)

    • Species Salmonella typhimurium [TaxId:90371] [53859] (1 PDB entry)

35. Thiaminase I [53865] (1 species)
    contains a few additional helices in the C-terminal extension; homologous to MBP

    • Species Paenibacillus thiaminolyticus [TaxId:49283] [53866] (3 PDB entries)

More info for Family c.94.1.1: Phosphate binding protein-like

Timeline for Family c.94.1.1: Phosphate binding protein-like:

• Family c.94.1.1: Phosphate binding protein-like first appeared (with stable ids) in SCOP 1.55
  
• Family c.94.1.1: Phosphate binding protein-like appears in SCOP 1.71
  
• Family c.94.1.1: Phosphate binding protein-like appears in SCOP 1.75
  
• Family c.94.1.1: Phosphate binding protein-like appears in the current release, SCOPe 2.08