Lineage for Family c.94.1.1: Phosphate binding protein-like

  1. Root: SCOP 1.71
  2. 570216Class c: Alpha and beta proteins (a/b) [51349] (134 folds)
  3. 593380Fold c.94: Periplasmic binding protein-like II [53849] (1 superfamily)
    consists of two similar intertwined domain with 3 layers (a/b/a) each: duplication
    mixed beta-sheet of 5 strands, order 21354; strand 5 is antiparallel to the rest
  4. 593381Superfamily c.94.1: Periplasmic binding protein-like II [53850] (2 families) (S)
    Similar in architecture to the superfamily I but partly differs in topology
  5. 593382Family c.94.1.1: Phosphate binding protein-like [53851] (29 proteins)

Proteins:

  1. 593383ABC transporter, periplasmic substrate-binding protein VCA0807 [117747] (1 species)
  2. 593393Alginate-binding periplasmic protein AlgQ2 [69624] (1 species)
  3. 593398ATP phosphoribosyltransferase (ATP-PRTase, HisG), catalytic domain [82559] (3 species)
    there is an additional C-terminal allosteric domain in some species
    1. 593399Species Escherichia coli [TaxId:562] [102698] (2 PDB entries)
    2. 593402Species Mycobacterium tuberculosis [TaxId:1773] [82560] (2 PDB entries)
    3. 593405Species Thermotoga maritima [TaxId:243274] [102699] (3 PDB entries)
  4. 593414Cofactor-binding fragment of LysR-type protein CysB [53886] (1 species)
  5. 593417D-maltodextrin-binding protein, MBP [53862] (4 species)
    contains a few additional helices in the C-terminal extension; homologous to thiaminase I
    1. 593418Species Alicyclobacillus acidocaldarius [TaxId:405212] [102690] (3 PDB entries)
    2. 593424Species Archaeon Pyrococcus furiosus [TaxId:2261] [53864] (1 PDB entry)
    3. 593426Species Archaeon Thermococcus litoralis [TaxId:2265] [64191] (1 PDB entry)
      trehalose maltose-binding protein
    4. 593428Species Escherichia coli [TaxId:562] [53863] (37 PDB entries)
  6. 593475Dipeptide-binding protein [53870] (1 species)
    similar domain organization to oligopeptide-binding protein, OPPA
  7. 593482Ferric-binding protein FbpA [53867] (7 species)
    1. 593483Species Bordetella pertussis [TaxId:520] [117745] (1 PDB entry)
    2. 593485Species Campylobacter jejuni [TaxId:197] [117744] (1 PDB entry)
    3. 593488Species Haemophilus influenzae [TaxId:727] [53868] (5 PDB entries)
    4. 593494Species Mannheimia haemolytica [TaxId:75985] [102691] (3 PDB entries)
    5. 593498Species Neisseria gonorrhoeae [53869] (4 PDB entries)
    6. 593527Species Serratia marcescens, SfuA [TaxId:615] [117743] (1 PDB entry)
    7. 593529Species Yersinia enterocolitica, YfuA [TaxId:630] [117742] (1 PDB entry)
  8. 593531Glutamate receptor ligand binding core [53881] (2 species)
    1. 593532Species Rat (Rattus norvegicus), GluR2 [TaxId:10116] [53882] (43 PDB entries)
    2. 593631Species Synechocystis sp., GluR0 [TaxId:1143] [64192] (3 PDB entries)
  9. 593635Glutamine-binding protein [53879] (1 species)
  10. 593640Glycine betaine-binding periplasmic protein ProX [102702] (1 species)
  11. 593644Histidine-binding protein [53872] (2 species)
    1. 593645Species Escherichia coli [TaxId:562] [53873] (1 PDB entry)
    2. 593648Species Salmonella typhimurium [TaxId:90371] [53874] (1 PDB entry)
  12. 593650Hydrogen peroxide-inducible genes LysR-type activator OxyR, regulatory domain [64193] (1 species)
  13. 593655Hypothetical protein YliB [102692] (1 species)
    similar domain organization to oligo- and dipeptide-binding protein
  14. 593659Lysine-,arginine-,ornithine-binding (LAO) protein [53856] (1 species)
  15. 593666LysR-type regulatory protein CbnR [89789] (1 species)
  16. 593674LysR-type regulatory protein DntR [110748] (1 species)
  17. 593680Molybdate-binding protein, ModA [53883] (2 species)
    1. 593681Species Azotobacter vinelandii [TaxId:354] [53885] (1 PDB entry)
    2. 593683Species Escherichia coli [TaxId:562] [53884] (2 PDB entries)
  18. 593686N-methyl-D-aspartate receptor subunit 1 [89787] (1 species)
  19. 593693Nickel-binding periplasmic protein NikA [102694] (1 species)
    similar domain organization to oligo- and dipeptide-binding protein
  20. 593699Oligo-peptide binding protein (OPPA) [53852] (1 species)
    contains an additional alpha+beta domain inserted in the N-terminal domain
  21. 593734Osmoprotection protein ProX [110750] (1 species)
    functionally related to the bacterial ProX
  22. 593745Phosphate-binding protein [53860] (2 species)
    1. 593746Species Escherichia coli [TaxId:562] [53861] (13 PDB entries)
    2. 593761Species Mycobacterium tuberculosis [TaxId:1773] [110747] (1 PDB entry)
  23. 593764Porphobilinogen deaminase (hydroxymethylbilane synthase), N-terminal domain [53854] (1 species)
  24. 593771Putative GluR0 ligand binding core [102696] (1 species)
  25. 593775Putative lipoprotein (NlpA family) [102700] (2 species)
    aka PG110, TpN32
    1. 593776Species Staphylococcus aureus [TaxId:1280] [102701] (1 PDB entry)
    2. 593778Species Treponema pallidum [TaxId:160] [117746] (1 PDB entry)
  26. 593780Putrescine receptor (PotF) [53877] (1 species)
  27. 593786Spermidine/putrescine-binding protein PotD [53875] (1 species)
  28. 593793Sulphate-binding protein [53858] (1 species)
  29. 593796Thiaminase I [53865] (1 species)
    contains a few additional helices in the C-terminal extension; homologous to MBP

More info for Family c.94.1.1: Phosphate binding protein-like

Timeline for Family c.94.1.1: Phosphate binding protein-like: