SCOPe 2.06: Family c.93.1.1: L-arabinose binding protein-like

Lineage for Family c.93.1.1: L-arabinose binding protein-like

1. Root: SCOPe 2.06

2. Class c: Alpha and beta proteins (a/b) [51349] (148 folds)

3. Fold c.93: Periplasmic binding protein-like I [53821] (1 superfamily)
   consists of two similar intertwined domain with 3 layers (a/b/a) each: duplication
   parallel beta-sheet of 6 strands, order 213456

4. Superfamily c.93.1: Periplasmic binding protein-like I [53822] (2 families)
   Similar in architecture to the superfamily II but partly differs in topology

5. Family c.93.1.1: L-arabinose binding protein-like [53823] (18 proteins)

Proteins:

1. AI-2 receptor LsrB [110745] (1 species)

   • Species Salmonella typhi [TaxId:90370] [110746] (2 PDB entries)
     Uniprot Q8Z2X8 27-340

2. Amide receptor/negative regulator of the amidase operon (AmiC) [53833] (1 species)

   • Species Pseudomonas aeruginosa [TaxId:287] [53834] (3 PDB entries)

3. D-allose-binding protein [53828] (1 species)

   • Species Escherichia coli [TaxId:562] [53829] (3 PDB entries)

4. D-ribose-binding protein [53824] (1 species)

   • Species Escherichia coli, strain k-12 [TaxId:562] [53825] (6 PDB entries)

5. Galactose/glucose-binding protein [53830] (2 species)

   1. Species Escherichia coli [TaxId:562] [53831] (9 PDB entries)

   2. Species Salmonella typhimurium, strain lt2 [TaxId:90371] [53832] (4 PDB entries)

6. Glucose-resistance amylase regulator CcpA, C-terminal domain [117740] (2 species)

   1. Species Bacillus megaterium [TaxId:1404] [117741] (10 PDB entries)
      Uniprot P46828 58-322 ! Uniprot P46828

   2. Species Lactococcus lactis [TaxId:1358] [255517] (1 PDB entry)

7. Hormone binding domain of the atrial natriuretic peptide receptor [53845] (2 species)

   1. Species Human (Homo sapiens) [TaxId:9606] [64190] (2 PDB entries)

   2. Species Norway rat (Rattus norvegicus) [TaxId:10116] [53846] (3 PDB entries)
      Uniprot P18910 29-454

8. Ionotropic glutamate receptor 2 (GluR2) amino-terminal domain (ATD) [267661] (1 species)

   • Species Norway rat (Rattus norvegicus) [TaxId:10116] [267740] (5 PDB entries)

9. L-arabinose-binding protein [53826] (1 species)

   • Species Escherichia coli [TaxId:562] [53827] (9 PDB entries)

10. Lac-repressor (lacR) core (C-terminal domain) [53837] (1 species)

    • Species Escherichia coli [TaxId:562] [53838] (11 PDB entries)

11. Leucine-,isoleucine-,valine-binding (LIV) protein [53841] (1 species)

    • Species Escherichia coli [TaxId:562] [53842] (1 PDB entry)

12. Leucine-binding protein [53843] (1 species)

    • Species Escherichia coli [TaxId:562] [53844] (4 PDB entries)

13. Metabotropic glutamate receptor subtype 1 [53847] (1 species)

    • Species Norway rat (Rattus norvegicus) [TaxId:10116] [53848] (5 PDB entries)

14. Purine repressor (PurR), C-terminal domain [53835] (1 species)

    • Species Escherichia coli [TaxId:562] [53836] (24 PDB entries)

15. Quorum-sensing signal (autoinducer-2) binding protein LuxP [69622] (1 species)

    • Species Vibrio harveyi [TaxId:669] [69623] (6 PDB entries)

16. Trehalose repressor, C-terminal domain [53839] (2 species)

    1. Species Escherichia coli [TaxId:562] [53840] (1 PDB entry)

    2. Species Escherichia coli [TaxId:83333] [273817] (1 PDB entry)

17. YraM C-terminal domain [159804] (1 species)

    • Species Haemophilus influenzae [TaxId:727] [159805] (2 PDB entries)
      Uniprot P45299 257-573
      HI1655

18. automated matches [190296] (11 species)
    not a true protein

    1. Species Actinobacillus succinogenes [TaxId:339671] [273094] (1 PDB entry)

    2. Species Bacillus anthracis [TaxId:198094] [238505] (1 PDB entry)

    3. Species Escherichia coli K-12 [TaxId:83333] [187775] (6 PDB entries)

    4. Species Escherichia coli [TaxId:536056] [311440] (2 PDB entries)

    5. Species Human (Homo sapiens) [TaxId:9606] [189164] (3 PDB entries)

    6. Species Norway rat (Rattus norvegicus) [TaxId:10116] [267861] (5 PDB entries)

    7. Species Rhizobium meliloti (Sinorhizobium meliloti) [TaxId:382] [188703] (1 PDB entry)

    8. Species Salmonella enterica [TaxId:90370] [338170] (1 PDB entry)

    9. Species Streptobacillus moniliformis [TaxId:519441] [271603] (1 PDB entry)

    10. Species Thermoanaerobacter tengcongensis [TaxId:119072] [187869] (1 PDB entry)

    11. Species Yersinia pestis [TaxId:214092] [226264] (2 PDB entries)

More info for Family c.93.1.1: L-arabinose binding protein-like

Timeline for Family c.93.1.1: L-arabinose binding protein-like:

• Family c.93.1.1: L-arabinose binding protein-like first appeared (with stable ids) in SCOP 1.55
  
• Family c.93.1.1: L-arabinose binding protein-like appears in SCOPe 2.05
  
• Family c.93.1.1: L-arabinose binding protein-like appears in SCOPe 2.07
  
• Family c.93.1.1: L-arabinose binding protein-like appears in the current release, SCOPe 2.08