SCOPe 2.02: Protein: Phosphoglycerate kinase

Lineage for Protein: Phosphoglycerate kinase

Root: SCOPe 2.02
Class c: Alpha and beta proteins (a/b) [51349] (147 folds)

Fold c.86: Phosphoglycerate kinase [53747] (1 superfamily)
consists of two non-similar domains, 3 layers (a/b/a) each
Domain 1 has parallel beta-sheet of 6 strands, order 342156
Domain 2 has parallel beta-sheet of 6 strands, order 321456

Superfamily c.86.1: Phosphoglycerate kinase [53748] (2 families)
Family c.86.1.1: Phosphoglycerate kinase [53749] (2 proteins)
Domain 2 binds ATP
Protein Phosphoglycerate kinase [53750] (8 species)

Species:

Bacillus stearothermophilus [TaxId:1422] [53752] (1 PDB entry)
- Domain for 1php:
  - Domain d1phpa_: 1php A: [35452]
    complexed with adp, mg
Baker's yeast (Saccharomyces cerevisiae) [TaxId:4932] [53751] (3 PDB entries)
1. Domain for 1fw8:
  - Domain d1fw8a_: 1fw8 A: [60058]
    Artificial circular permutation
    complexed with gol
2. Domain for 1qpg:
  - Domain d1qpga_: 1qpg A: [35450]
    complexed with 3pg, map; mutant
3. Domain for 3pgk:
  - Domain d3pgka_: 3pgk A: [35451]
    complexed with 3pg, atp, mg
Escherichia coli [TaxId:562] [188193] (1 PDB entry)
- Domain for 1zmr:
  - Domain d1zmra_: 1zmr A: [162550]
    automated match to d1phpa_
    complexed with ca
Malaria parasite (Plasmodium falciparum) [TaxId:5833] [89783] (2 PDB entries)
1. Domains for 1ltk:
  1. Domain d1ltka_: 1ltk A: [84698]
    complexed with amp, gol, so4
  2. Domain d1ltkb_: 1ltk B: [84699]
    complexed with amp, gol, so4
  3. Domain d1ltkc_: 1ltk C: [84700]
    complexed with amp, gol, so4
2. Domains for 3oz7:
  1. Domain d3oz7a_: 3oz7 A: [183408]
    automated match to d1ltka_
    complexed with so4
  2. Domain d3oz7b_: 3oz7 B: [183409]
    automated match to d1ltka_
    complexed with so4
Pig (Sus scrofa) [TaxId:9823] [64177] (4 PDB entries)
1. Domain for 1hdi:
  - Domain d1hdia_: 1hdi A: [60964]
    complexed with 3pg, amp, mg
2. Domain for 1kf0:
  - Domain d1kf0a_: 1kf0 A: [72393]
    complexed with 3pg, acp, mg
3. Domain for 1vjc:
  - Domain d1vjca_: 1vjc A: [100805]
    complexed with atp, mg
4. Domain for 1vjd:
  - Domain d1vjda_: 1vjd A: [100806]
    complexed with atp, po4
Thermotoga maritima [TaxId:2336] [53753] (1 PDB entry)
- Domain for 1vpe:
  - Domain d1vpea_: 1vpe A: [35453]
    complexed with 3pg, anp, mg
Thermus thermophilus [TaxId:274] [102677] (1 PDB entry)
- Domains for 1v6s:
  1. Domain d1v6sa_: 1v6s A: [100424]
    complexed with gol, na
  2. Domain d1v6sb_: 1v6s B: [100425]
    complexed with gol, na
Trypanosome (Trypanosoma brucei) [TaxId:5691] [53754] (2 PDB entries)
1. Domains for 13pk:
  1. Domain d13pka_: 13pk A: [35455]
    complexed with 3pg, adp, mg, po4
  2. Domain d13pkb_: 13pk B: [35456]
    complexed with 3pg, adp, mg, po4
  3. Domain d13pkc_: 13pk C: [35457]
    complexed with 3pg, adp, mg, po4
  4. Domain d13pkd_: 13pk D: [35458]
    complexed with 3pg, adp, mg, po4
2. Domain for 16pk:
  - Domain d16pka_: 16pk A: [35454]
    complexed with bis, epe

More info for Protein Phosphoglycerate kinase from c.86.1.1: Phosphoglycerate kinase

Timeline for Protein Phosphoglycerate kinase from c.86.1.1: Phosphoglycerate kinase:

Protein Phosphoglycerate kinase from c.86.1.1: Phosphoglycerate kinase first appeared (with stable ids) in SCOP 1.55
Protein Phosphoglycerate kinase from c.86.1.1: Phosphoglycerate kinase appears in SCOPe 2.01
Protein Phosphoglycerate kinase from c.86.1.1: Phosphoglycerate kinase appears in SCOPe 2.03
Protein Phosphoglycerate kinase from c.86.1.1: Phosphoglycerate kinase appears in the current release, SCOPe 2.08