SCOPe 2.07: Family c.78.1.1: Aspartate/ornithine carbamoyltransferase

Lineage for Family c.78.1.1: Aspartate/ornithine carbamoyltransferase

1. Root: SCOPe 2.07

2. Class c: Alpha and beta proteins (a/b) [51349] (148 folds)

3. Fold c.78: ATC-like [53670] (2 superfamilies)
   consists of two similar domains related by pseudo dyad; duplication
   core: 3 layers, a/b/a, parallel beta-sheet of 4 strands, order 2134

4. Superfamily c.78.1: Aspartate/ornithine carbamoyltransferase [53671] (2 families)

5. Family c.78.1.1: Aspartate/ornithine carbamoyltransferase [53672] (4 proteins)

Proteins:

1. Aspartate carbamoyltransferase catalytic subunit [53673] (7 species)

   1. Species Bacillus subtilis [TaxId:1423] [53675] (1 PDB entry)

   2. Species Escherichia coli [TaxId:562] [53674] (63 PDB entries)
      Uniprot P00479

   3. Species Escherichia coli [TaxId:585035] [334795] (1 PDB entry)

   4. Species Methanococcus jannaschii [TaxId:2190] [225539] (1 PDB entry)

   5. Species Moritella profunda [TaxId:111291] [225163] (1 PDB entry)

   6. Species Pyrococcus abyssi [TaxId:29292] [82533] (1 PDB entry)

   7. Species Sulfolobus acidocaldarius [TaxId:2285] [110719] (2 PDB entries)
      Uniprot Q55338

2. Ornithine transcarbamoylase [53676] (6 species)

   1. Species Escherichia coli [TaxId:562] [53678] (3 PDB entries)

   2. Species Human (Homo sapiens) [TaxId:9606] [53680] (4 PDB entries)

   3. Species Pseudomonas aeruginosa [TaxId:287] [53677] (2 PDB entries)

   4. Species Pyrococcus furiosus [TaxId:2261] [53679] (2 PDB entries)

   5. Species Sheep (Ovis aries) [TaxId:9940] [102666] (1 PDB entry)

   6. Species Thermotoga maritima [TaxId:2336] [110720] (1 PDB entry)
      Uniprot P96108

3. Transcarbamylase-like protein [75308] (1 species)

   • Species Bacteroides fragilis [TaxId:817] [75309] (4 PDB entries)

4. automated matches [227030] (3 species)
   not a true protein

   1. Species Escherichia coli K-12 [TaxId:83333] [225926] (1 PDB entry)

   2. Species Salmonella typhimurium [TaxId:216597] [369214] (1 PDB entry)

   3. Species Yersinia pestis [TaxId:214092] [225855] (1 PDB entry)

More info for Family c.78.1.1: Aspartate/ornithine carbamoyltransferase

Timeline for Family c.78.1.1: Aspartate/ornithine carbamoyltransferase:

• Family c.78.1.1: Aspartate/ornithine carbamoyltransferase first appeared (with stable ids) in SCOP 1.55
  
• Family c.78.1.1: Aspartate/ornithine carbamoyltransferase appears in SCOPe 2.06
  
• Family c.78.1.1: Aspartate/ornithine carbamoyltransferase appears in the current release, SCOPe 2.08