Lineage for Species: Escherichia coli [TaxId: 562]
- Root: SCOPe 2.07
Class c: Alpha and beta proteins (a/b) [51349] (148 folds) 
Fold c.72: Ribokinase-like [53612] (3 superfamilies)
core: 3 layers: a/b/a; mixed beta-sheet of 8 strands, order 21345678, strand 7 is antiparallel to the rest
potential superfamily: members of this fold have similar functions but different ATP-binding sites
Superfamily c.72.2: MurD-like peptide ligases, catalytic domain [53623] (3 families) 
has extra strand located between strands 1 and 2Family c.72.2.1: MurCDEF [53624] (5 proteins)
automatically mapped to Pfam PF08245
Protein UDP-N-acetylmuramoyl-L-alanine:D-glutamate ligase MurD [53625] (1 species) Species Escherichia coli [TaxId:562] [53626] (7 PDB entries)
PDB entries in Species: Escherichia coli [TaxId: 562]:
- Domain(s) for 1e0d:
Domain d1e0da3: 1e0d A:94-297 [34959]
Other proteins in same PDB: d1e0da1, d1e0da2
complexed with so4
- Domain(s) for 1eeh:
Domain d1eeha3: 1eeh A:94-297 [34958]
Other proteins in same PDB: d1eeha1, d1eeha2
complexed with uma
- Domain(s) for 1uag:
Domain d1uaga3: 1uag A:94-297 [34957]
Other proteins in same PDB: d1uaga1, d1uaga2
complexed with so4, uma
- Domain(s) for 2uag:
Domain d2uaga3: 2uag A:94-297 [34954]
Other proteins in same PDB: d2uaga1, d2uaga2
complexed with adp, mg, uma
- Domain(s) for 3uag:
Domain d3uaga3: 3uag A:94-297 [34956]
Other proteins in same PDB: d3uaga1, d3uaga2
complexed with adp, epe, mn, uma
- Domain(s) for 4uag:
Domain d4uaga3: 4uag A:94-297 [34955]
Other proteins in same PDB: d4uaga1, d4uaga2
complexed with so4, uag, unx
- Domain(s) for 5a5e:
Domain d5a5ea2: 5a5e A:94-297 [315198]
Other proteins in same PDB: d5a5ea1, d5a5ea3
automated match to d2uaga3
complexed with mpd, ni, so4
More info for Species Escherichia coli [TaxId:562] from c.72.2.1 UDP-N-acetylmuramoyl-L-alanine:D-glutamate ligase MurD
Timeline for Species Escherichia coli [TaxId:562] from c.72.2.1 UDP-N-acetylmuramoyl-L-alanine:D-glutamate ligase MurD:
- Species Escherichia coli [TaxId:562] from c.72.2.1 UDP-N-acetylmuramoyl-L-alanine:D-glutamate ligase MurD first appeared (with stable ids) in SCOP 1.55, called Species Escherichia coli [TaxId:562] from c.72.2.1 UDP-N-acetylmuramoyl-L-alanine:D-glutamate ligase, gene MurD
- Species Escherichia coli [TaxId:562] from c.72.2.1 UDP-N-acetylmuramoyl-L-alanine:D-glutamate ligase MurD appears in SCOPe 2.06
- Species Escherichia coli [TaxId:562] from c.72.2.1 UDP-N-acetylmuramoyl-L-alanine:D-glutamate ligase MurD appears in the current release, SCOPe 2.08