SCOPe 2.07: Family c.67.1.3: Cystathionine synthase-like

Lineage for Family c.67.1.3: Cystathionine synthase-like

1. Root: SCOPe 2.07

2. Class c: Alpha and beta proteins (a/b) [51349] (148 folds)

3. Fold c.67: PLP-dependent transferase-like [53382] (3 superfamilies)
   main domain: 3 layers: a/b/a, mixed beta-sheet of 7 strands, order 3245671; strand 7 is antiparallel to the rest

4. Superfamily c.67.1: PLP-dependent transferases [53383] (10 families)

5. Family c.67.1.3: Cystathionine synthase-like [53402] (17 proteins)

Proteins:

1. 2-aminoethylphosphonate transaminase [82486] (1 species)

   • Species Salmonella typhimurium [TaxId:90371] [82487] (1 PDB entry)

2. 3-hydroxykynurenine transaminase [142667] (1 species)

   • Species African malaria mosquito (Anopheles gambiae) [TaxId:7165] [142668] (1 PDB entry)
     Uniprot Q4LAM2 2-389

3. Alanine-glyoxylate aminotransferase [89757] (3 species)

   1. Species Baker's yeast (Saccharomyces cerevisiae) [TaxId:4932] [142664] (1 PDB entry)
      Uniprot P43567 3-384

   2. Species Human (Homo sapiens) [TaxId:9606] [89758] (11 PDB entries)

   3. Species Nostoc sp. PCC 7120 [TaxId:103690] [102598] (1 PDB entry)
      alr1004

4. Cystalysin [53410] (1 species)
   PLP-dependent haemolytic enzyme

   • Species Treponema denticola [TaxId:158] [53411] (2 PDB entries)

5. Cystathionine beta-lyase, CBL [53403] (2 species)

   1. Species Escherichia coli [TaxId:562] [53404] (6 PDB entries)

   2. Species Thale cress (Arabidopsis thaliana) [TaxId:3702] [64125] (1 PDB entry)

6. Cystathionine gamma-lyase (CYS3) [82484] (1 species)

   • Species Baker's yeast (Saccharomyces cerevisiae) [TaxId:4932] [82485] (1 PDB entry)

7. Cystathionine gamma-synthase, CGS [53405] (2 species)

   1. Species Escherichia coli [TaxId:562] [53406] (1 PDB entry)

   2. Species Tobacco (Nicotiana tabacum) [TaxId:4097] [53407] (4 PDB entries)

8. Cysteine desulfurase IscS [89755] (1 species)

   • Species Escherichia coli [TaxId:562] [89756] (1 PDB entry)

9. Cystine C-S lyase C-des [53415] (1 species)

   • Species Synechocystis sp. [TaxId:1143] [53416] (4 PDB entries)

10. Kynureninase [102601] (1 species)

    • Species Pseudomonas fluorescens [TaxId:294] [102602] (1 PDB entry)

11. Methionine gamma-lyase, MGL [64126] (4 species)

    1. Species Citrobacter freundii [TaxId:546] [142663] (9 PDB entries)
       Uniprot Q84AR1 2-398

    2. Species Pseudomonas putida [TaxId:303] [75271] (13 PDB entries)
       Uniprot P13254

    3. Species Trichomonas vaginalis, MGL1 [TaxId:5722] [64127] (2 PDB entries)

    4. Species Trichomonas vaginalis, MGL2 [TaxId:5722] [110683] (1 PDB entry)
       Uniprot O15565

12. Modulator in mal gene expression, MalY [53408] (1 species)

    • Species Escherichia coli [TaxId:562] [53409] (1 PDB entry)

13. NifS-like protein/selenocysteine lyase [53412] (5 species)

    1. Species Escherichia coli [TaxId:1281269] [378590] (1 PDB entry)

    2. Species Escherichia coli [TaxId:562] [53414] (5 PDB entries)
       gene product CsdB

    3. Species Escherichia coli [TaxId:668369] [321684] (1 PDB entry)

    4. Species Escherichia coli [TaxId:83333] [362244] (10 PDB entries)

    5. Species Thermotoga maritima [TaxId:2336] [53413] (2 PDB entries)

14. O-acetyl-L-homoserine sulfhydrylase [142665] (1 species)

    • Species Thermus thermophilus [TaxId:274] [142666] (1 PDB entry)
      Uniprot Q93I77 1-421

15. Probable cysteine desulfurase SufS [110684] (1 species)

    • Species Synechocystis sp. PCC 6803 [TaxId:1148] [110685] (1 PDB entry)
      Uniprot Q55793 # slr0077

16. Subgroup IV putative aspartate aminotransferase [102599] (1 species)

    • Species Thermus thermophilus [TaxId:274] [102600] (1 PDB entry)

17. automated matches [190399] (10 species)
    not a true protein

    1. Species Aedes aegypti [TaxId:7159] [374205] (1 PDB entry)

    2. Species Citrobacter freundii [TaxId:1288347] [260926] (1 PDB entry)

    3. Species Citrobacter freundii [TaxId:546] [261234] (7 PDB entries)

    4. Species Escherichia coli [TaxId:155864] [255940] (3 PDB entries)

    5. Species Escherichia coli [TaxId:562] [255941] (1 PDB entry)

    6. Species Human (Homo sapiens) [TaxId:9606] [189951] (12 PDB entries)

    7. Species Mouse (Mus musculus) [TaxId:10090] [189108] (2 PDB entries)

    8. Species Pseudomonas putida [TaxId:303] [187269] (1 PDB entry)

    9. Species Thale cress (Arabidopsis thaliana) [TaxId:3702] [259476] (2 PDB entries)

    10. Species Thermus thermophilus [TaxId:274] [187566] (1 PDB entry)

More info for Family c.67.1.3: Cystathionine synthase-like

Timeline for Family c.67.1.3: Cystathionine synthase-like:

• Family c.67.1.3: Cystathionine synthase-like first appeared (with stable ids) in SCOP 1.55
  
• Family c.67.1.3: Cystathionine synthase-like appears in SCOPe 2.06
  
• Family c.67.1.3: Cystathionine synthase-like appears in the current release, SCOPe 2.08