SCOPe 2.07: Protein: Uracil PRTase, Upp

Lineage for Protein: Uracil PRTase, Upp

Root: SCOPe 2.07
Class c: Alpha and beta proteins (a/b) [51349] (148 folds)
Fold c.61: PRTase-like [53270] (1 superfamily)
core: 3 layers, a/b/a; mixed beta-sheet of 6 strands, order 321456; strand 3 is antiparallel to the rest
Superfamily c.61.1: PRTase-like [53271] (3 families)
Family c.61.1.1: Phosphoribosyltransferases (PRTases) [53272] (16 proteins)
Protein Uracil PRTase, Upp [53293] (5 species)

Species:

Bacillus caldolyticus [TaxId:1394] [75256] (1 PDB entry)
- Domains for 1i5e:
  1. Domain d1i5ea_: 1i5e A: [71116]
    complexed with u5p
  2. Domain d1i5eb_: 1i5e B: [71117]
    complexed with u5p
Sulfolobus solfataricus [TaxId:2287] [142555] (5 PDB entries)
Uniprot Q980Q4 2-216
1. Domain for 1vst:
  - Domain d1vsta_: 1vst A: [161870]
    automated match to d1xtta1
    complexed with gtp, mg, prp
2. Domains for 1xtt:
  1. Domain d1xtta1: 1xtt A:2-216 [122300]
    complexed with acy, u5p
  2. Domain d1xttb_: 1xtt B: [122301]
    automated match to d1o5oa_
    complexed with acy, u5p
  3. Domain d1xttc_: 1xtt C: [122302]
    automated match to d1o5oa_
    complexed with acy, u5p
  4. Domain d1xttd_: 1xtt D: [122303]
    automated match to d1o5oa_
    complexed with acy, u5p
3. Domains for 1xtu:
  1. Domain d1xtua_: 1xtu A: [122304]
    automated match to d1o5oa_
    complexed with ctp, u5p
  2. Domain d1xtub_: 1xtu B: [122305]
    automated match to d1o5oa_
    complexed with ctp, u5p
  3. Domain d1xtuc_: 1xtu C: [122306]
    automated match to d1o5oa_
    complexed with ctp, u5p
  4. Domain d1xtud_: 1xtu D: [122307]
    automated match to d1o5oa_
    complexed with ctp, u5p
  5. Domain d1xtue_: 1xtu E: [122308]
    automated match to d1o5oa_
    complexed with ctp, u5p
  6. Domain d1xtuf_: 1xtu F: [122309]
    automated match to d1o5oa_
    complexed with ctp, u5p
  7. Domain d1xtug_: 1xtu G: [122310]
    automated match to d1o5oa_
    complexed with ctp, u5p
  8. Domain d1xtuh_: 1xtu H: [122311]
    automated match to d1o5oa_
    complexed with ctp, u5p
4. Domains for 1xtv:
  1. Domain d1xtva_: 1xtv A: [122312]
    automated match to d1o5oa_
    complexed with u5p
  2. Domain d1xtvb_: 1xtv B: [122313]
    automated match to d1o5oa_
    complexed with u5p
  3. Domain d1xtvc_: 1xtv C: [122314]
    automated match to d1o5oa_
    complexed with u5p
  4. Domain d1xtvd_: 1xtv D: [122315]
    automated match to d1o5oa_
    complexed with u5p
  5. Domain d1xtve_: 1xtv E: [122316]
    automated match to d1o5oa_
    complexed with u5p
  6. Domain d1xtvf_: 1xtv F: [122317]
    automated match to d1o5oa_
    complexed with u5p
  7. Domain d1xtvg_: 1xtv G: [122318]
    automated match to d1o5oa_
    complexed with u5p
  8. Domain d1xtvh_: 1xtv H: [122319]
    automated match to d1o5oa_
    complexed with u5p
5. Domains for 3g6w:
  1. Domain d3g6wa_: 3g6w A: [176396]
    automated match to d1xtta1
    complexed with gtp, hsx, mg, pop, prp
  2. Domain d3g6wb_: 3g6w B: [176397]
    automated match to d1xtta1
    complexed with gtp, hsx, mg, pop, prp
  3. Domain d3g6wc_: 3g6w C: [176398]
    automated match to d1xtta1
    complexed with gtp, hsx, mg, pop, prp
  4. Domain d3g6wd_: 3g6w D: [176399]
    automated match to d1xtta1
    complexed with gtp, hsx, mg, pop, prp
Thermotoga maritima [TaxId:2336] [102538] (1 PDB entry)
TM0721
- Domains for 1o5o:
  1. Domain d1o5oa1: 1o5o A:1-209 [92509]
    Other proteins in same PDB: d1o5oa2, d1o5oc2, d1o5od2
    structural genomics
    complexed with so4, u5p
  2. Domain d1o5ob_: 1o5o B: [92510]
    Other proteins in same PDB: d1o5oa2, d1o5oc2, d1o5od2
    structural genomics
    complexed with so4, u5p
  3. Domain d1o5oc1: 1o5o C:1-209 [92511]
    Other proteins in same PDB: d1o5oa2, d1o5oc2, d1o5od2
    structural genomics
    complexed with so4, u5p
  4. Domain d1o5od1: 1o5o D:1-209 [92512]
    Other proteins in same PDB: d1o5oa2, d1o5oc2, d1o5od2
    structural genomics
    complexed with so4, u5p
Thermus thermophilus [TaxId:274] [142554] (1 PDB entry)
Uniprot Q72J35 1-208
- Domain for 1v9s:
  - Domain d1v9sa1: 1v9s A:1-208 [119894]
    Other proteins in same PDB: d1v9sb_, d1v9sc_, d1v9sd_
    complexed with so4
Toxoplasma gondii [TaxId:5811] [53295] (6 PDB entries)
1. Domains for 1bd3:
  1. Domain d1bd3a_: 1bd3 A: [34098]
    complexed with po4; mutant
  2. Domain d1bd3b_: 1bd3 B: [34099]
    complexed with po4; mutant
  3. Domain d1bd3c_: 1bd3 C: [34100]
    complexed with po4; mutant
  4. Domain d1bd3d_: 1bd3 D: [34101]
    complexed with po4; mutant
2. Domains for 1bd4:
  1. Domain d1bd4a_: 1bd4 A: [34106]
    complexed with po4, ura
  2. Domain d1bd4b_: 1bd4 B: [34107]
    complexed with po4, ura
  3. Domain d1bd4c_: 1bd4 C: [34108]
    complexed with po4, ura
  4. Domain d1bd4d_: 1bd4 D: [34109]
    complexed with po4, ura
3. Domains for 1jlr:
  1. Domain d1jlra_: 1jlr A: [66859]
    complexed with gtp, po4; mutant
  2. Domain d1jlrb_: 1jlr B: [66860]
    complexed with gtp, po4; mutant
  3. Domain d1jlrc_: 1jlr C: [66861]
    complexed with gtp, po4; mutant
  4. Domain d1jlrd_: 1jlr D: [66862]
    complexed with gtp, po4; mutant
4. Domains for 1jls:
  1. Domain d1jlsa_: 1jls A: [66863]
    complexed with mg, po4, prp, ura; mutant
  2. Domain d1jlsb_: 1jls B: [66864]
    complexed with mg, po4, prp, ura; mutant
  3. Domain d1jlsc_: 1jls C: [66865]
    complexed with mg, po4, prp, ura; mutant
  4. Domain d1jlsd_: 1jls D: [66866]
    complexed with mg, po4, prp, ura; mutant
5. Domains for 1upf:
  1. Domain d1upfa_: 1upf A: [34102]
    complexed with so4, urf; mutant
  2. Domain d1upfb_: 1upf B: [34103]
    complexed with so4, urf; mutant
  3. Domain d1upfc_: 1upf C: [34104]
    complexed with so4, urf; mutant
  4. Domain d1upfd_: 1upf D: [34105]
    complexed with so4, urf; mutant
6. Domains for 1upu:
  1. Domain d1upua_: 1upu A: [34110]
    complexed with po4, u5p; mutant
  2. Domain d1upub_: 1upu B: [34111]
    complexed with po4, u5p; mutant
  3. Domain d1upuc_: 1upu C: [34112]
    complexed with po4, u5p; mutant
  4. Domain d1upud_: 1upu D: [34113]
    complexed with po4, u5p; mutant

More info for Protein Uracil PRTase, Upp from c.61.1.1: Phosphoribosyltransferases (PRTases)

Timeline for Protein Uracil PRTase, Upp from c.61.1.1: Phosphoribosyltransferases (PRTases):

Protein Uracil PRTase, Upp from c.61.1.1: Phosphoribosyltransferases (PRTases) first appeared (with stable ids) in SCOP 1.55, called Protein Uracil PRTase from c.61.1.1: Phosphoribosyltransferases (PRTases)
Protein Uracil PRTase, Upp from c.61.1.1: Phosphoribosyltransferases (PRTases) appears in SCOPe 2.06
Protein Uracil PRTase, Upp from c.61.1.1: Phosphoribosyltransferases (PRTases) appears in the current release, SCOPe 2.08