Lineage for Species: Pyrococcus kodakaraensis [TaxId: 311400]

  1. Root: SCOPe 2.06
  2. 2078559Class c: Alpha and beta proteins (a/b) [51349] (148 folds)
  3. 2122050Fold c.55: Ribonuclease H-like motif [53066] (7 superfamilies)
    3 layers: a/b/a; mixed beta-sheet of 5 strands, order 32145; strand 2 is antiparallel to the rest
  4. 2123751Superfamily c.55.3: Ribonuclease H-like [53098] (15 families) (S)
    consists of one domain of this fold
  5. 2124334Family c.55.3.5: DnaQ-like 3'-5' exonuclease [53118] (17 protein domains)
    contains Pfam PF00929
  6. 2124346Protein Exonuclease domain of family B DNA polymerases [53125] (8 species)
    elaborated with additional structures and the N-terminal subdomain
  7. 2124489Species Pyrococcus kodakaraensis [TaxId:311400] [53131] (2 PDB entries)
    Uniprot P56689 1-758 # 93% sequence identity; Thermococcus kodakarensis KOD1 TaxID: 69014
    additional N-terminal subdomain contains rudimental OB-fold but complete ferredoxin-like fold

PDB entries in Species: Pyrococcus kodakaraensis [TaxId: 311400]:

  1. Domain(s) for 1wn7:
  2. Domain(s) for 1wns:

More info for Species Pyrococcus kodakaraensis [TaxId:311400] from c.55.3.5 Exonuclease domain of family B DNA polymerases

Timeline for Species Pyrococcus kodakaraensis [TaxId:311400] from c.55.3.5 Exonuclease domain of family B DNA polymerases: