Lineage for Species: Bacteriophage RB69 [TaxId: 12353]

  1. Root: SCOPe 2.01
  2. 968085Class c: Alpha and beta proteins (a/b) [51349] (147 folds)
  3. 995076Fold c.55: Ribonuclease H-like motif [53066] (7 superfamilies)
    3 layers: a/b/a; mixed beta-sheet of 5 strands, order 32145; strand 2 is antiparallel to the rest
  4. 995888Superfamily c.55.3: Ribonuclease H-like [53098] (15 families) (S)
    consists of one domain of this fold
  5. 996218Family c.55.3.5: DnaQ-like 3'-5' exonuclease [53118] (16 proteins)
    contains Pfam PF00929
  6. 996219Protein Exonuclease domain of family B DNA polymerases [53125] (8 species)
    elaborated with additional structures and the N-terminal subdomain
  7. 996220Species Bacteriophage RB69 [TaxId:12353] [53127] (15 PDB entries)
    additional N-terminal subdomain contains rudimental OB-fold and rudimental ferredoxin-like fold

PDB entries in Species: Bacteriophage RB69 [TaxId: 12353]:

  1. Domain(s) for 1clq:
  2. Domain(s) for 1ig9:
  3. Domain(s) for 1ih7:
  4. Domain(s) for 1q9x:
    1. 996231Domain d1q9xa1: 1q9x A:1-375 [96328]
      Other proteins in same PDB: d1q9xa2, d1q9xb2, d1q9xc2, d1q9xd2
      protein/DNA complex; complexed with 3dr, ca, dgp, doc
    2. 996232Domain d1q9xb1: 1q9x B:1-375 [96330]
      Other proteins in same PDB: d1q9xa2, d1q9xb2, d1q9xc2, d1q9xd2
      protein/DNA complex; complexed with 3dr, ca, dgp, doc
    3. 996233Domain d1q9xc1: 1q9x C:1-375 [96332]
      Other proteins in same PDB: d1q9xa2, d1q9xb2, d1q9xc2, d1q9xd2
      protein/DNA complex; complexed with 3dr, ca, dgp, doc
    4. 996234Domain d1q9xd1: 1q9x D:1-375 [96334]
      Other proteins in same PDB: d1q9xa2, d1q9xb2, d1q9xc2, d1q9xd2
      protein/DNA complex; complexed with 3dr, ca, dgp, doc
  5. Domain(s) for 1q9y:
  6. Domain(s) for 1waf:
    1. 996249Domain d1wafa1: 1waf A:1-375 [33719]
      Other proteins in same PDB: d1wafa2, d1wafb2
      complexed with gmp
    2. 996250Domain d1wafb1: 1waf B:1-375 [33720]
      Other proteins in same PDB: d1wafa2, d1wafb2
      complexed with gmp
  7. Domain(s) for 1waj:
  8. Domain(s) for 2atq:
  9. Domain(s) for 2dy4:
    1. 996224Domain d2dy4a1: 2dy4 A:1-375 [131882]
      Other proteins in same PDB: d2dy4a2, d2dy4b2, d2dy4c2, d2dy4d2
      automatically matched to d1clqa1
      protein/DNA complex
    2. 996225Domain d2dy4b1: 2dy4 B:1-375 [131884]
      Other proteins in same PDB: d2dy4a2, d2dy4b2, d2dy4c2, d2dy4d2
      automatically matched to d1clqa1
      protein/DNA complex
    3. 996226Domain d2dy4c1: 2dy4 C:1-375 [131886]
      Other proteins in same PDB: d2dy4a2, d2dy4b2, d2dy4c2, d2dy4d2
      automatically matched to d1clqa1
      protein/DNA complex
    4. 996227Domain d2dy4d1: 2dy4 D:1-375 [131888]
      Other proteins in same PDB: d2dy4a2, d2dy4b2, d2dy4c2, d2dy4d2
      automatically matched to d1clqa1
      protein/DNA complex
  10. Domain(s) for 2oyq:
    1. 996241Domain d2oyqa1: 2oyq A:1-375 [149070]
      Other proteins in same PDB: d2oyqa2, d2oyqb2, d2oyqc2, d2oyqd2
      automatically matched to d1clqa1
      protein/DNA complex; complexed with mg, n5p
    2. 996242Domain d2oyqb1: 2oyq B:1-375 [149072]
      Other proteins in same PDB: d2oyqa2, d2oyqb2, d2oyqc2, d2oyqd2
      automatically matched to d1clqa1
      protein/DNA complex; complexed with mg, n5p
    3. 996243Domain d2oyqc1: 2oyq C:1-375 [149074]
      Other proteins in same PDB: d2oyqa2, d2oyqb2, d2oyqc2, d2oyqd2
      automatically matched to d1clqa1
      protein/DNA complex; complexed with mg, n5p
    4. 996244Domain d2oyqd1: 2oyq D:2-375 [149076]
      Other proteins in same PDB: d2oyqa2, d2oyqb2, d2oyqc2, d2oyqd2
      automatically matched to d1clqa1
      protein/DNA complex; complexed with mg, n5p
  11. Domain(s) for 2ozm:
  12. Domain(s) for 2ozs:
  13. Domain(s) for 2p5g:
    1. 996237Domain d2p5ga1: 2p5g A:1-375 [149240]
      Other proteins in same PDB: d2p5ga2, d2p5gb2, d2p5gc2, d2p5gd2
      automatically matched to d1clqa1
      protein/DNA complex
    2. 996238Domain d2p5gb1: 2p5g B:1-375 [149242]
      Other proteins in same PDB: d2p5ga2, d2p5gb2, d2p5gc2, d2p5gd2
      automatically matched to d1clqa1
      protein/DNA complex
    3. 996239Domain d2p5gc1: 2p5g C:1-375 [149244]
      Other proteins in same PDB: d2p5ga2, d2p5gb2, d2p5gc2, d2p5gd2
      automatically matched to d1clqa1
      protein/DNA complex
    4. 996240Domain d2p5gd1: 2p5g D:2-375 [149246]
      Other proteins in same PDB: d2p5ga2, d2p5gb2, d2p5gc2, d2p5gd2
      automatically matched to d1clqa1
      protein/DNA complex
  14. Domain(s) for 2p5o:
    1. 996245Domain d2p5oa1: 2p5o A:1-375 [139498]
      Other proteins in same PDB: d2p5oa2, d2p5ob2, d2p5oc2, d2p5od2
      automatically matched to d1clqa1
      protein/DNA complex
    2. 996246Domain d2p5ob1: 2p5o B:1-375 [139500]
      Other proteins in same PDB: d2p5oa2, d2p5ob2, d2p5oc2, d2p5od2
      automatically matched to d1clqa1
      protein/DNA complex
    3. 996247Domain d2p5oc1: 2p5o C:1-375 [139502]
      Other proteins in same PDB: d2p5oa2, d2p5ob2, d2p5oc2, d2p5od2
      automatically matched to d1clqa1
      protein/DNA complex
    4. 996248Domain d2p5od1: 2p5o D:1-375 [139504]
      Other proteins in same PDB: d2p5oa2, d2p5ob2, d2p5oc2, d2p5od2
      automatically matched to d1clqa1
      protein/DNA complex
  15. Domain(s) for 3cq8:

More info for Species Bacteriophage RB69 [TaxId:12353] from c.55.3.5 Exonuclease domain of family B DNA polymerases

Timeline for Species Bacteriophage RB69 [TaxId:12353] from c.55.3.5 Exonuclease domain of family B DNA polymerases: