Class c: Alpha and beta proteins (a/b) [51349] (147 folds) |
Fold c.55: Ribonuclease H-like motif [53066] (7 superfamilies) 3 layers: a/b/a; mixed beta-sheet of 5 strands, order 32145; strand 2 is antiparallel to the rest |
Superfamily c.55.3: Ribonuclease H-like [53098] (15 families) consists of one domain of this fold |
Family c.55.3.5: DnaQ-like 3'-5' exonuclease [53118] (16 proteins) contains Pfam PF00929 |
Protein Exonuclease domain of family B DNA polymerases [53125] (8 species) elaborated with additional structures and the N-terminal subdomain |
Species Bacteriophage RB69 [TaxId:12353] [53127] (15 PDB entries) additional N-terminal subdomain contains rudimental OB-fold and rudimental ferredoxin-like fold |
Domain d1clqa1: 1clq A:1-375 [33717] Other proteins in same PDB: d1clqa2 protein/DNA complex; complexed with ca, gdp |
Domain d1ig9a1: 1ig9 A:1-375 [62367] Other proteins in same PDB: d1ig9a2 protein/DNA complex; complexed with ca, ttp |
Domain d1ih7a1: 1ih7 A:1-375 [62375] Other proteins in same PDB: d1ih7a2 complexed with gmp, k |
Domain d1q9xa1: 1q9x A:1-375 [96328] Other proteins in same PDB: d1q9xa2, d1q9xb2, d1q9xc2, d1q9xd2 protein/DNA complex; complexed with 3dr, ca, dgp, doc |
Domain d1q9xb1: 1q9x B:1-375 [96330] Other proteins in same PDB: d1q9xa2, d1q9xb2, d1q9xc2, d1q9xd2 protein/DNA complex; complexed with 3dr, ca, dgp, doc |
Domain d1q9xc1: 1q9x C:1-375 [96332] Other proteins in same PDB: d1q9xa2, d1q9xb2, d1q9xc2, d1q9xd2 protein/DNA complex; complexed with 3dr, ca, dgp, doc |
Domain d1q9xd1: 1q9x D:1-375 [96334] Other proteins in same PDB: d1q9xa2, d1q9xb2, d1q9xc2, d1q9xd2 protein/DNA complex; complexed with 3dr, ca, dgp, doc |
Domain d1q9ya1: 1q9y A:1-375 [96336] Other proteins in same PDB: d1q9ya2 protein/DNA complex; complexed with ca, dcp |
Domain d1wafa1: 1waf A:1-375 [33719] Other proteins in same PDB: d1wafa2, d1wafb2 complexed with gmp |
Domain d1wafb1: 1waf B:1-375 [33720] Other proteins in same PDB: d1wafa2, d1wafb2 complexed with gmp |
Domain d1waja1: 1waj A:1-375 [33718] Other proteins in same PDB: d1waja2 complexed with 5gp |
Domain d2atqa1: 2atq A:1-375 [127303] Other proteins in same PDB: d2atqa2, d2atqb1 automatically matched to d1clqa1 protein/DNA complex; complexed with gdp, zn |
Domain d2dy4a1: 2dy4 A:1-375 [131882] Other proteins in same PDB: d2dy4a2, d2dy4b2, d2dy4c2, d2dy4d2 automatically matched to d1clqa1 protein/DNA complex |
Domain d2dy4b1: 2dy4 B:1-375 [131884] Other proteins in same PDB: d2dy4a2, d2dy4b2, d2dy4c2, d2dy4d2 automatically matched to d1clqa1 protein/DNA complex |
Domain d2dy4c1: 2dy4 C:1-375 [131886] Other proteins in same PDB: d2dy4a2, d2dy4b2, d2dy4c2, d2dy4d2 automatically matched to d1clqa1 protein/DNA complex |
Domain d2dy4d1: 2dy4 D:1-375 [131888] Other proteins in same PDB: d2dy4a2, d2dy4b2, d2dy4c2, d2dy4d2 automatically matched to d1clqa1 protein/DNA complex |
Domain d2oyqa1: 2oyq A:1-375 [149070] Other proteins in same PDB: d2oyqa2, d2oyqb2, d2oyqc2, d2oyqd2 automatically matched to d1clqa1 protein/DNA complex; complexed with mg, n5p |
Domain d2oyqb1: 2oyq B:1-375 [149072] Other proteins in same PDB: d2oyqa2, d2oyqb2, d2oyqc2, d2oyqd2 automatically matched to d1clqa1 protein/DNA complex; complexed with mg, n5p |
Domain d2oyqc1: 2oyq C:1-375 [149074] Other proteins in same PDB: d2oyqa2, d2oyqb2, d2oyqc2, d2oyqd2 automatically matched to d1clqa1 protein/DNA complex; complexed with mg, n5p |
Domain d2oyqd1: 2oyq D:2-375 [149076] Other proteins in same PDB: d2oyqa2, d2oyqb2, d2oyqc2, d2oyqd2 automatically matched to d1clqa1 protein/DNA complex; complexed with mg, n5p |
Domain d2ozma1: 2ozm A:1-375 [149115] Other proteins in same PDB: d2ozma2 automatically matched to d1clqa1 protein/DNA complex; complexed with mg, n5p |
Domain d2ozsa1: 2ozs A:1-375 [149127] Other proteins in same PDB: d2ozsa2 automatically matched to d1clqa1 protein/DNA complex; complexed with dtp, mg |
Domain d2p5ga1: 2p5g A:1-375 [149240] Other proteins in same PDB: d2p5ga2, d2p5gb2, d2p5gc2, d2p5gd2 automatically matched to d1clqa1 protein/DNA complex |
Domain d2p5gb1: 2p5g B:1-375 [149242] Other proteins in same PDB: d2p5ga2, d2p5gb2, d2p5gc2, d2p5gd2 automatically matched to d1clqa1 protein/DNA complex |
Domain d2p5gc1: 2p5g C:1-375 [149244] Other proteins in same PDB: d2p5ga2, d2p5gb2, d2p5gc2, d2p5gd2 automatically matched to d1clqa1 protein/DNA complex |
Domain d2p5gd1: 2p5g D:2-375 [149246] Other proteins in same PDB: d2p5ga2, d2p5gb2, d2p5gc2, d2p5gd2 automatically matched to d1clqa1 protein/DNA complex |
Domain d2p5oa1: 2p5o A:1-375 [139498] Other proteins in same PDB: d2p5oa2, d2p5ob2, d2p5oc2, d2p5od2 automatically matched to d1clqa1 protein/DNA complex |
Domain d2p5ob1: 2p5o B:1-375 [139500] Other proteins in same PDB: d2p5oa2, d2p5ob2, d2p5oc2, d2p5od2 automatically matched to d1clqa1 protein/DNA complex |
Domain d2p5oc1: 2p5o C:1-375 [139502] Other proteins in same PDB: d2p5oa2, d2p5ob2, d2p5oc2, d2p5od2 automatically matched to d1clqa1 protein/DNA complex |
Domain d2p5od1: 2p5o D:1-375 [139504] Other proteins in same PDB: d2p5oa2, d2p5ob2, d2p5oc2, d2p5od2 automatically matched to d1clqa1 protein/DNA complex |
Domain d3cq8a1: 3cq8 A:1-375 [156927] Other proteins in same PDB: d3cq8a2 automatically matched to d1clqa1 protein/DNA complex; complexed with ca, gol, na, ttp; mutant |
Timeline for Species Bacteriophage RB69 [TaxId:12353] from c.55.3.5 Exonuclease domain of family B DNA polymerases: