Class c: Alpha and beta proteins (a/b) [51349] (121 folds) |
Fold c.55: Ribonuclease H-like motif [53066] (7 superfamilies) 3 layers: a/b/a; mixed beta-sheet of 5 strands, order 32145; strand 2 is antiparallel to the rest |
Superfamily c.55.3: Ribonuclease H-like [53098] (7 families) consists of one domain of this fold |
Family c.55.3.5: DnaQ-like 3'-5' exonuclease [53118] (6 proteins) |
Protein Exonuclease domain of family B (archaeal and phage) DNA polymerases [53125] (6 species) elaborated with additional structures and the N-terminal subdomain the N-terminal subdomain of archaeal polymerases contains ferredoxin-like fold |
Archaeon Desulfurococcus tok [TaxId:108142] [53130] (2 PDB entries) |
Domain d1d5aa1: 1d5a A:1-347 [33723] Other proteins in same PDB: d1d5aa2 complexed with mg, so4 |
Domain d1qqca1: 1qqc A:1-347 [33724] Other proteins in same PDB: d1qqca2 complexed with mg, so4 |
Archaeon Pyrococcus kodakaraensis [TaxId:311400] [53131] (1 PDB entry) |
Domain d1gcxa1: 1gcx A:1-347 [33725] Other proteins in same PDB: d1gcxa2 |
Archaeon Thermococcus gorgonarius [TaxId:71997] [53128] (1 PDB entry) |
Domain d1tgoa1: 1tgo A:1-347 [33721] Other proteins in same PDB: d1tgoa2 |
Archaeon Thermococcus sp., 9on-7 [TaxId:35749] [53129] (1 PDB entry) |
Domain d1qhta1: 1qht A:1-347 [33722] Other proteins in same PDB: d1qhta2 mutant |
Bacteriophage RB69 [TaxId:12353] [53127] (5 PDB entries) |
Domain d1clqa1: 1clq A:1-375 [33717] Other proteins in same PDB: d1clqa2 |
Domain d1ig9a1: 1ig9 A:1-375 [62367] Other proteins in same PDB: d1ig9a2 complexed with ca, doc, ttp; mutant |
Domain d1ih7a1: 1ih7 A:1-375 [62375] Other proteins in same PDB: d1ih7a2 complexed with gmp, k |
Domain d1wafa1: 1waf A:1-375 [33719] Other proteins in same PDB: d1wafa2, d1wafb2 |
Domain d1wafb1: 1waf B:1-375 [33720] Other proteins in same PDB: d1wafa2, d1wafb2 complexed with gmp |
Domain d1waj_1: 1waj 1-375 [33718] Other proteins in same PDB: d1waj_2 complexed with 5gp |
Bacteriophage T4 [TaxId:10665] [53126] (2 PDB entries) |
Domain d1noya_: 1noy A: [33713] |
Domain d1noyb_: 1noy B: [33714] protein/DNA complex; complexed with mn, zn |
Domain d1noza_: 1noz A: [33715] |
Domain d1nozb_: 1noz B: [33716] |
Timeline for Protein Exonuclease domain of family B (archaeal and phage) DNA polymerases from c.55.3.5: DnaQ-like 3'-5' exonuclease: