Species:

1. Bacteriophage RB69 [TaxId:12353] [53127] (93 PDB entries) additional N-terminal subdomain contains rudimental OB-fold and rudimental ferredoxin-like fold

   1. Domain for 1clq:

      • Domain d1clqa1: 1clq A:1-375 [33717] Other proteins in same PDB: d1clqa2 protein/DNA complex; complexed with ca, gdp has additional subdomain(s) that are not in the common domain

   2. Domain for 1ig9:

      • Domain d1ig9a1: 1ig9 A:1-375 [62367] Other proteins in same PDB: d1ig9a2 protein/DNA complex; complexed with ca, ttp has additional subdomain(s) that are not in the common domain

   3. Domain for 1ih7:

      • Domain d1ih7a1: 1ih7 A:1-375 [62375] Other proteins in same PDB: d1ih7a2 complexed with gmp, k has additional subdomain(s) that are not in the common domain

   4. Domains for 1q9x:

      1. Domain d1q9xa1: 1q9x A:1-375 [96328] Other proteins in same PDB: d1q9xa2, d1q9xb2, d1q9xc2, d1q9xd2 protein/DNA complex; complexed with 3dr, ca, dgp, doc has additional subdomain(s) that are not in the common domain

      2. Domain d1q9xb1: 1q9x B:1-375 [96330] Other proteins in same PDB: d1q9xa2, d1q9xb2, d1q9xc2, d1q9xd2 protein/DNA complex; complexed with 3dr, ca, dgp, doc has additional subdomain(s) that are not in the common domain

      3. Domain d1q9xc1: 1q9x C:1-375 [96332] Other proteins in same PDB: d1q9xa2, d1q9xb2, d1q9xc2, d1q9xd2 protein/DNA complex; complexed with 3dr, ca, dgp, doc has additional subdomain(s) that are not in the common domain

      4. Domain d1q9xd1: 1q9x D:1-375 [96334] Other proteins in same PDB: d1q9xa2, d1q9xb2, d1q9xc2, d1q9xd2 protein/DNA complex; complexed with 3dr, ca, dgp, doc has additional subdomain(s) that are not in the common domain

   5. Domain for 1q9y:

      • Domain d1q9ya1: 1q9y A:4-375 [96336] Other proteins in same PDB: d1q9ya2, d1q9ya3 protein/DNA complex; complexed with ca, dcp has additional subdomain(s) that are not in the common domain

   6. Domains for 1rv2:

      1. Domain d1rv2a3: 1rv2 A:1-375 [407911] Other proteins in same PDB: d1rv2a4, d1rv2b4, d1rv2c4, d1rv2d4 automated match to d1q9xd1 protein/DNA complex

      2. Domain d1rv2b3: 1rv2 B:1-375 [407913] Other proteins in same PDB: d1rv2a4, d1rv2b4, d1rv2c4, d1rv2d4 automated match to d1ig9a1 protein/DNA complex

      3. Domain d1rv2c3: 1rv2 C:1-375 [407915] Other proteins in same PDB: d1rv2a4, d1rv2b4, d1rv2c4, d1rv2d4 automated match to d1ig9a1 protein/DNA complex

      4. Domain d1rv2d3: 1rv2 D:1-375 [344512] Other proteins in same PDB: d1rv2a4, d1rv2b4, d1rv2c4, d1rv2d4 automated match to d1ig9a1 protein/DNA complex has additional subdomain(s) that are not in the common domain

   7. Domains for 1waf:

      1. Domain d1wafa1: 1waf A:1-375 [33719] Other proteins in same PDB: d1wafa2, d1wafb2 complexed with gmp has additional subdomain(s) that are not in the common domain

      2. Domain d1wafb1: 1waf B:1-375 [33720] Other proteins in same PDB: d1wafa2, d1wafb2 complexed with gmp has additional subdomain(s) that are not in the common domain

   8. Domain for 1waj:

      • Domain d1waja1: 1waj A:1-375 [33718] Other proteins in same PDB: d1waja2 complexed with 5gp has additional subdomain(s) that are not in the common domain

   9. Domain for 2atq:

      • Domain d2atqa1: 2atq A:1-375 [127303] Other proteins in same PDB: d2atqa2, d2atqb1 automatically matched to d1clqa1 protein/DNA complex; complexed with gdp, zn has additional subdomain(s) that are not in the common domain

   10. Domains for 2dtu:

       1. Domain d2dtua1: 2dtu A:1-375 [230656] Other proteins in same PDB: d2dtua2, d2dtub2, d2dtuc2, d2dtud2 automated match to d1ih7a1 protein/DNA complex has additional subdomain(s) that are not in the common domain

       2. Domain d2dtub1: 2dtu B:1-375 [230654] Other proteins in same PDB: d2dtua2, d2dtub2, d2dtuc2, d2dtud2 automated match to d1ih7a1 protein/DNA complex has additional subdomain(s) that are not in the common domain

       3. Domain d2dtuc1: 2dtu C:1-375 [230655] Other proteins in same PDB: d2dtua2, d2dtub2, d2dtuc2, d2dtud2 automated match to d1ih7a1 protein/DNA complex has additional subdomain(s) that are not in the common domain

       4. Domain d2dtud1: 2dtu D:1-375 [230657] Other proteins in same PDB: d2dtua2, d2dtub2, d2dtuc2, d2dtud2 automated match to d1ih7a1 protein/DNA complex has additional subdomain(s) that are not in the common domain

   11. Domains for 2dy4:

       1. Domain d2dy4a1: 2dy4 A:1-375 [131882] Other proteins in same PDB: d2dy4a2, d2dy4b2, d2dy4c2, d2dy4d2 automated match to d1q9xa1 protein/DNA complex has additional subdomain(s) that are not in the common domain

       2. Domain d2dy4b1: 2dy4 B:1-375 [131884] Other proteins in same PDB: d2dy4a2, d2dy4b2, d2dy4c2, d2dy4d2 automated match to d1q9xa1 protein/DNA complex has additional subdomain(s) that are not in the common domain

       3. Domain d2dy4c1: 2dy4 C:1-375 [131886] Other proteins in same PDB: d2dy4a2, d2dy4b2, d2dy4c2, d2dy4d2 automated match to d1ig9a1 protein/DNA complex has additional subdomain(s) that are not in the common domain

       4. Domain d2dy4d1: 2dy4 D:1-375 [131888] Other proteins in same PDB: d2dy4a2, d2dy4b2, d2dy4c2, d2dy4d2 automated match to d1ig9a1 protein/DNA complex has additional subdomain(s) that are not in the common domain

   12. Domains for 2oyq:

       1. Domain d2oyqa1: 2oyq A:1-375 [149070] Other proteins in same PDB: d2oyqa2, d2oyqb2, d2oyqc2, d2oyqd2 automated match to d2ozma1 protein/DNA complex; complexed with mg, n5p has additional subdomain(s) that are not in the common domain

       2. Domain d2oyqb1: 2oyq B:1-375 [149072] Other proteins in same PDB: d2oyqa2, d2oyqb2, d2oyqc2, d2oyqd2 automated match to d1ig9a1 protein/DNA complex; complexed with mg, n5p has additional subdomain(s) that are not in the common domain

       3. Domain d2oyqc1: 2oyq C:1-375 [149074] Other proteins in same PDB: d2oyqa2, d2oyqb2, d2oyqc2, d2oyqd2 automated match to d1ig9a1 protein/DNA complex; complexed with mg, n5p has additional subdomain(s) that are not in the common domain

       4. Domain d2oyqd1: 2oyq D:2-375 [149076] Other proteins in same PDB: d2oyqa2, d2oyqb2, d2oyqc2, d2oyqd2 automated match to d1ig9a1 protein/DNA complex; complexed with mg, n5p has additional subdomain(s) that are not in the common domain

   13. Domain for 2ozm:

       • Domain d2ozma1: 2ozm A:1-375 [149115] Other proteins in same PDB: d2ozma2 automated match to d1q9xa1 protein/DNA complex; complexed with mg, n5p has additional subdomain(s) that are not in the common domain

   14. Domain for 2ozs:

       • Domain d2ozsa1: 2ozs A:1-375 [149127] Other proteins in same PDB: d2ozsa2 automated match to d1q9xa1 protein/DNA complex; complexed with dtp, mg has additional subdomain(s) that are not in the common domain

   15. Domains for 2p5g:

       1. Domain d2p5ga1: 2p5g A:1-375 [149240] Other proteins in same PDB: d2p5ga2, d2p5gb2, d2p5gc2, d2p5gd2 automated match to d1q9xa1 protein/DNA complex has additional subdomain(s) that are not in the common domain

       2. Domain d2p5gb1: 2p5g B:1-375 [149242] Other proteins in same PDB: d2p5ga2, d2p5gb2, d2p5gc2, d2p5gd2 automated match to d1ig9a1 protein/DNA complex has additional subdomain(s) that are not in the common domain

       3. Domain d2p5gc1: 2p5g C:1-375 [149244] Other proteins in same PDB: d2p5ga2, d2p5gb2, d2p5gc2, d2p5gd2 automated match to d1ig9a1 protein/DNA complex has additional subdomain(s) that are not in the common domain

       4. Domain d2p5gd1: 2p5g D:2-375 [149246] Other proteins in same PDB: d2p5ga2, d2p5gb2, d2p5gc2, d2p5gd2 automated match to d1ig9a1 protein/DNA complex has additional subdomain(s) that are not in the common domain

   16. Domains for 2p5o:

       1. Domain d2p5oa1: 2p5o A:1-375 [139498] Other proteins in same PDB: d2p5oa2, d2p5ob2, d2p5oc2, d2p5od2 automatically matched to d1clqa1 protein/DNA complex has additional subdomain(s) that are not in the common domain

       2. Domain d2p5ob1: 2p5o B:1-375 [139500] Other proteins in same PDB: d2p5oa2, d2p5ob2, d2p5oc2, d2p5od2 automatically matched to d1clqa1 protein/DNA complex has additional subdomain(s) that are not in the common domain

       3. Domain d2p5oc1: 2p5o C:1-375 [139502] Other proteins in same PDB: d2p5oa2, d2p5ob2, d2p5oc2, d2p5od2 automatically matched to d1clqa1 protein/DNA complex has additional subdomain(s) that are not in the common domain

       4. Domain d2p5od1: 2p5o D:1-375 [139504] Other proteins in same PDB: d2p5oa2, d2p5ob2, d2p5oc2, d2p5od2 automatically matched to d1clqa1 protein/DNA complex has additional subdomain(s) that are not in the common domain

   17. Domain for 3cfo:

       • Domain d3cfoa1: 3cfo A:1-375 [231886] Other proteins in same PDB: d3cfoa2, d3cfoa3 automated match to d1ih7a1 complexed with gmp, so4; mutant has additional subdomain(s) that are not in the common domain

   18. Domain for 3cq8:

       • Domain d3cq8a1: 3cq8 A:1-375 [156927] Other proteins in same PDB: d3cq8a2 automated match to d4khqa1 protein/DNA complex; complexed with ca, gol, na, ttp; mutant has additional subdomain(s) that are not in the common domain

   19. Domains for 3l8b:

       1. Domain d3l8ba1: 3l8b A:1-375 [232820] Other proteins in same PDB: d3l8ba2, d3l8bb2 automated match to d1ih7a1 protein/DNA complex; complexed with so4 has additional subdomain(s) that are not in the common domain

       2. Domain d3l8bb1: 3l8b B:1-375 [232821] Other proteins in same PDB: d3l8ba2, d3l8bb2 automated match to d1ih7a1 protein/DNA complex; complexed with so4 has additional subdomain(s) that are not in the common domain

   20. Domain for 3lds:

       • Domain d3ldsa1: 3lds A:1-375 [247450] Other proteins in same PDB: d3ldsa2 automated match to d3uiqa1 protein/DNA complex; complexed with dtp, mn, so4 has additional subdomain(s) that are not in the common domain

   21. Domain for 3lzi:

       • Domain d3lzia1: 3lzi A:1-375 [232866] Other proteins in same PDB: d3lzia2 automated match to d1ih7a1 protein/DNA complex; complexed with ca, dtp has additional subdomain(s) that are not in the common domain

   22. Domain for 3lzj:

       • Domain d3lzja1: 3lzj A:1-375 [232867] Other proteins in same PDB: d3lzja2 automated match to d1ih7a1 protein/DNA complex; complexed with ca, ctp has additional subdomain(s) that are not in the common domain

   23. Domain for 3nae:

       • Domain d3naea1: 3nae A:1-375 [247869] Other proteins in same PDB: d3naea2 automated match to d3lzja1 protein/DNA complex; complexed with ca, dtp has additional subdomain(s) that are not in the common domain

   24. Domain for 3nci:

       • Domain d3ncia1: 3nci A:1-375 [213877] Other proteins in same PDB: d3ncia2 automated match to d1q9xa1 protein/DNA complex; complexed with ca, dcp has additional subdomain(s) that are not in the common domain

   25. Domain for 3ndk:

       • Domain d3ndka1: 3ndk A:1-375 [247887] Other proteins in same PDB: d3ndka2 automated match to d3lzja1 protein/DNA complex; complexed with ca, dcp has additional subdomain(s) that are not in the common domain

   26. Domain for 3ne6:

       • Domain d3ne6a1: 3ne6 A:1-375 [233010] Other proteins in same PDB: d3ne6a2 automated match to d1ih7a1 protein/DNA complex; complexed with ca, dcp has additional subdomain(s) that are not in the common domain

   27. Domain for 3ngi:

       • Domain d3ngia1: 3ngi A:1-375 [247915] Other proteins in same PDB: d3ngia2 automated match to d3lzja1 protein/DNA complex; complexed with ca, ttp has additional subdomain(s) that are not in the common domain

   28. Domain for 3nhg:

       • Domain d3nhga1: 3nhg A:1-375 [247933] Other proteins in same PDB: d3nhga2 automated match to d3ne6a1 protein/DNA complex; complexed with ca, ttp has additional subdomain(s) that are not in the common domain

   29. Domain for 3qes:

       • Domain d3qesa1: 3qes A:1-375 [233320] Other proteins in same PDB: d3qesa2 automated match to d1ih7a1 protein/DNA complex; complexed with ca, dgt has additional subdomain(s) that are not in the common domain

   30. Domain for 3qet:

       • Domain d3qeta1: 3qet A:1-375 [233322] Other proteins in same PDB: d3qeta2 automated match to d1ih7a1 protein/DNA complex; complexed with ca, ttp has additional subdomain(s) that are not in the common domain

   31. Domains for 3rma:

       1. Domain d3rmaa1: 3rma A:1-375 [249140] Other proteins in same PDB: d3rmaa2, d3rmab2, d3rmac2, d3rmad2 automated match to d3l8bb1 protein/DNA complex has additional subdomain(s) that are not in the common domain

       2. Domain d3rmab1: 3rma B:1-375 [249142] Other proteins in same PDB: d3rmaa2, d3rmab2, d3rmac2, d3rmad2 automated match to d3l8bb1 protein/DNA complex has additional subdomain(s) that are not in the common domain

       3. Domain d3rmac1: 3rma C:1-375 [249144] Other proteins in same PDB: d3rmaa2, d3rmab2, d3rmac2, d3rmad2 automated match to d3l8bb1 protein/DNA complex has additional subdomain(s) that are not in the common domain

       4. Domain d3rmad1: 3rma D:1-375 [249146] Other proteins in same PDB: d3rmaa2, d3rmab2, d3rmac2, d3rmad2 automated match to d3l8bb1 protein/DNA complex has additional subdomain(s) that are not in the common domain

   32. Domains for 3rmb:

       1. Domain d3rmba1: 3rmb A:1-375 [249148] Other proteins in same PDB: d3rmba2, d3rmbb2, d3rmbc2, d3rmbd2 automated match to d3l8bb1 protein/DNA complex; complexed with so4 has additional subdomain(s) that are not in the common domain

       2. Domain d3rmbb1: 3rmb B:1-375 [249150] Other proteins in same PDB: d3rmba2, d3rmbb2, d3rmbc2, d3rmbd2 automated match to d3l8bb1 protein/DNA complex; complexed with so4 has additional subdomain(s) that are not in the common domain

       3. Domain d3rmbc1: 3rmb C:1-375 [249152] Other proteins in same PDB: d3rmba2, d3rmbb2, d3rmbc2, d3rmbd2 automated match to d3l8bb1 protein/DNA complex; complexed with so4 has additional subdomain(s) that are not in the common domain

       4. Domain d3rmbd1: 3rmb D:1-375 [249154] Other proteins in same PDB: d3rmba2, d3rmbb2, d3rmbc2, d3rmbd2 automated match to d3l8bb1 protein/DNA complex; complexed with so4 has additional subdomain(s) that are not in the common domain

   33. Domains for 3rmc:

       1. Domain d3rmca1: 3rmc A:1-375 [249156] Other proteins in same PDB: d3rmca2, d3rmcb2, d3rmcc2, d3rmcd2 automated match to d3uiqa1 protein/DNA complex has additional subdomain(s) that are not in the common domain

       2. Domain d3rmcb1: 3rmc B:1-375 [249158] Other proteins in same PDB: d3rmca2, d3rmcb2, d3rmcc2, d3rmcd2 automated match to d3uiqa1 protein/DNA complex has additional subdomain(s) that are not in the common domain

       3. Domain d3rmcc1: 3rmc C:1-375 [249160] Other proteins in same PDB: d3rmca2, d3rmcb2, d3rmcc2, d3rmcd2 automated match to d3uiqa1 protein/DNA complex has additional subdomain(s) that are not in the common domain

       4. Domain d3rmcd1: 3rmc D:1-375 [249162] Other proteins in same PDB: d3rmca2, d3rmcb2, d3rmcc2, d3rmcd2 automated match to d3uiqa1 protein/DNA complex has additional subdomain(s) that are not in the common domain

   34. Domains for 3rmd:

       1. Domain d3rmda1: 3rmd A:1-375 [249164] Other proteins in same PDB: d3rmda2, d3rmdb2, d3rmdc2, d3rmdd2 automated match to d3l8bb1 protein/DNA complex; complexed with dtp has additional subdomain(s) that are not in the common domain

       2. Domain d3rmdb1: 3rmd B:1-375 [249166] Other proteins in same PDB: d3rmda2, d3rmdb2, d3rmdc2, d3rmdd2 automated match to d3l8bb1 protein/DNA complex; complexed with dtp has additional subdomain(s) that are not in the common domain

       3. Domain d3rmdc1: 3rmd C:1-375 [249168] Other proteins in same PDB: d3rmda2, d3rmdb2, d3rmdc2, d3rmdd2 automated match to d3l8bb1 protein/DNA complex; complexed with dtp has additional subdomain(s) that are not in the common domain

       4. Domain d3rmdd1: 3rmd D:1-375 [249170] Other proteins in same PDB: d3rmda2, d3rmdb2, d3rmdc2, d3rmdd2 automated match to d3l8bb1 protein/DNA complex; complexed with dtp has additional subdomain(s) that are not in the common domain

   35. Domain for 3s9h:

       • Domain d3s9ha1: 3s9h A:1-375 [249316] Other proteins in same PDB: d3s9ha2 automated match to d3qeta1 protein/DNA complex; complexed with ca, dup; mutant has additional subdomain(s) that are not in the common domain

   36. Domain for 3scx:

       • Domain d3scxa1: 3scx A:1-375 [233528] Other proteins in same PDB: d3scxa2 automated match to d1ih7a1 protein/DNA complex; complexed with ca, dup; mutant has additional subdomain(s) that are not in the common domain

   37. Domain for 3si6:

       • Domain d3si6a1: 3si6 A:1-375 [249474] Other proteins in same PDB: d3si6a2 automated match to d3scxa1 protein/DNA complex; complexed with dup, mg; mutant has additional subdomain(s) that are not in the common domain

   38. Domain for 3sjj:

       • Domain d3sjja1: 3sjj A:1-375 [249486] Other proteins in same PDB: d3sjja2 automated match to d3scxa1 protein/DNA complex; complexed with dup, mn; mutant has additional subdomain(s) that are not in the common domain

   39. Domain for 3snn:

       • Domain d3snna1: 3snn A:1-375 [249530] Other proteins in same PDB: d3snna2 automated match to d3scxa1 protein/DNA complex; complexed with dcp, mg has additional subdomain(s) that are not in the common domain

   40. Domain for 3spy:

       • Domain d3spya1: 3spy A:1-375 [233589] Other proteins in same PDB: d3spya2 automated match to d1ih7a1 protein/DNA complex; complexed with mg, upc has additional subdomain(s) that are not in the common domain

   41. Domain for 3spz:

       • Domain d3spza1: 3spz A:1-375 [233591] Other proteins in same PDB: d3spza2 automated match to d1ih7a1 protein/DNA complex; complexed with ca, upc has additional subdomain(s) that are not in the common domain

   42. Domain for 3sq0:

       • Domain d3sq0a1: 3sq0 A:1-375 [249550] Other proteins in same PDB: d3sq0a2 automated match to d3qeta1 protein/DNA complex; complexed with dup, mn has additional subdomain(s) that are not in the common domain

   43. Domain for 3sq1:

       • Domain d3sq1a1: 3sq1 A:1-375 [233593] Other proteins in same PDB: d3sq1a2 automated match to d1ih7a1 protein/DNA complex; complexed with ca, dup has additional subdomain(s) that are not in the common domain

   44. Domain for 3sq2:

       • Domain d3sq2a1: 3sq2 A:1-375 [233595] Other proteins in same PDB: d3sq2a2 automated match to d1ih7a1 protein/DNA complex; complexed with ca, ttp has additional subdomain(s) that are not in the common domain

   45. Domain for 3sq4:

       • Domain d3sq4a1: 3sq4 A:1-375 [249552] Other proteins in same PDB: d3sq4a2 automated match to d3sq2a1 protein/DNA complex; complexed with ca, ttp has additional subdomain(s) that are not in the common domain

   46. Domain for 3sun:

       • Domain d3suna1: 3sun A:1-375 [233638] Other proteins in same PDB: d3suna2 automated match to d1ih7a1 protein/DNA complex; complexed with ca, ttp has additional subdomain(s) that are not in the common domain

   47. Domain for 3suo:

       • Domain d3suoa1: 3suo A:1-375 [233640] Other proteins in same PDB: d3suoa2 automated match to d1ih7a1 protein/DNA complex; complexed with ca, ttp has additional subdomain(s) that are not in the common domain

   48. Domain for 3sup:

       • Domain d3supa1: 3sup A:1-375 [249578] Other proteins in same PDB: d3supa2 automated match to d3lzja1 protein/DNA complex; complexed with ca, dcp has additional subdomain(s) that are not in the common domain

   49. Domain for 3suq:

       • Domain d3suqa1: 3suq A:1-375 [249580] Other proteins in same PDB: d3suqa2 automated match to d3ncia1 protein/DNA complex; complexed with ca, dcp has additional subdomain(s) that are not in the common domain

   50. Domains for 3tae:

       1. Domain d3taea1: 3tae A:1-375 [249841] Other proteins in same PDB: d3taea2, d3taeb2, d3taec2, d3taed2 automated match to d3l8bb1 protein/DNA complex; complexed with so4 has additional subdomain(s) that are not in the common domain

       2. Domain d3taeb1: 3tae B:1-375 [249843] Other proteins in same PDB: d3taea2, d3taeb2, d3taec2, d3taed2 automated match to d3l8bb1 protein/DNA complex; complexed with so4 has additional subdomain(s) that are not in the common domain

       3. Domain d3taec1: 3tae C:1-375 [249845] Other proteins in same PDB: d3taea2, d3taeb2, d3taec2, d3taed2 automated match to d3l8bb1 protein/DNA complex; complexed with so4 has additional subdomain(s) that are not in the common domain

       4. Domain d3taed1: 3tae D:1-375 [249847] Other proteins in same PDB: d3taea2, d3taeb2, d3taec2, d3taed2 automated match to d3l8bb1 protein/DNA complex; complexed with so4 has additional subdomain(s) that are not in the common domain

   51. Domains for 3tag:

       1. Domain d3taga1: 3tag A:1-375 [249849] Other proteins in same PDB: d3taga2, d3taga3, d3tagb2, d3tagc2, d3tagd2 automated match to d3l8bb1 protein/DNA complex; complexed with so4 has additional subdomain(s) that are not in the common domain

       2. Domain d3tagb1: 3tag B:1-375 [249851] Other proteins in same PDB: d3taga2, d3taga3, d3tagb2, d3tagc2, d3tagd2 automated match to d3l8bb1 protein/DNA complex; complexed with so4 has additional subdomain(s) that are not in the common domain

       3. Domain d3tagc1: 3tag C:1-375 [249853] Other proteins in same PDB: d3taga2, d3taga3, d3tagb2, d3tagc2, d3tagd2 automated match to d3l8bb1 protein/DNA complex; complexed with so4 has additional subdomain(s) that are not in the common domain

       4. Domain d3tagd1: 3tag D:1-375 [249855] Other proteins in same PDB: d3taga2, d3taga3, d3tagb2, d3tagc2, d3tagd2 automated match to d3l8bb1 protein/DNA complex; complexed with so4 has additional subdomain(s) that are not in the common domain

   52. Domain for 3uiq:

       • Domain d3uiqa1: 3uiq A:1-375 [217392] Other proteins in same PDB: d3uiqa2 automated match to d1ih7a1 protein/DNA complex; complexed with ca, dup has additional subdomain(s) that are not in the common domain

   53. Domain for 4dtj:

       • Domain d4dtja1: 4dtj A:1-375 [220019] Other proteins in same PDB: d4dtja2 automated match to d3cq8a1 protein/DNA complex; complexed with ca, ttp has additional subdomain(s) that are not in the common domain

   54. Domain for 4dtm:

       • Domain d4dtma1: 4dtm A:1-375 [220021] Other proteins in same PDB: d4dtma2 automated match to d3cq8a1 protein/DNA complex; complexed with ca, dcp has additional subdomain(s) that are not in the common domain

   55. Domain for 4dtn:

       • Domain d4dtna1: 4dtn A:1-375 [251550] Other proteins in same PDB: d4dtna2 automated match to d3qeta1 protein/DNA complex; complexed with ca, dtp has additional subdomain(s) that are not in the common domain

   56. Domain for 4dto:

       • Domain d4dtoa1: 4dto A:1-375 [251552] Other proteins in same PDB: d4dtoa2 automated match to d3qeta1 protein/DNA complex; complexed with ca, dcp has additional subdomain(s) that are not in the common domain

   57. Domain for 4dtp:

       • Domain d4dtpa1: 4dtp A:1-375 [251554] Other proteins in same PDB: d4dtpa2 automated match to d3qeta1 protein/DNA complex; complexed with ca, dgt has additional subdomain(s) that are not in the common domain

   58. Domain for 4dtr:

       • Domain d4dtra1: 4dtr A:1-375 [251556] Other proteins in same PDB: d4dtra2 automated match to d3qesa1 protein/DNA complex; complexed with ca, dtp has additional subdomain(s) that are not in the common domain

   59. Domain for 4dts:

       • Domain d4dtsa1: 4dts A:1-375 [251558] Other proteins in same PDB: d4dtsa2 automated match to d3qesa1 protein/DNA complex; complexed with ca, dcp has additional subdomain(s) that are not in the common domain

   60. Domain for 4dtu:

       • Domain d4dtua1: 4dtu A:1-375 [251560] Other proteins in same PDB: d4dtua2 automated match to d3qesa1 protein/DNA complex; complexed with ca, dgt has additional subdomain(s) that are not in the common domain

   61. Domain for 4dtx:

       • Domain d4dtxa1: 4dtx A:1-375 [251562] Other proteins in same PDB: d4dtxa2 automated match to d3qesa1 protein/DNA complex; complexed with ca, ttp has additional subdomain(s) that are not in the common domain

   62. Domain for 4du1:

       • Domain d4du1a1: 4du1 A:1-375 [220027] Other proteins in same PDB: d4du1a2 automated match to d1ig9a1 protein/DNA complex; complexed with ca, dtp has additional subdomain(s) that are not in the common domain

   63. Domain for 4du3:

       • Domain d4du3a1: 4du3 A:1-375 [220029] Other proteins in same PDB: d4du3a2 automated match to d1ig9a1 protein/DNA complex; complexed with ca, dtp has additional subdomain(s) that are not in the common domain

   64. Domain for 4du4:

       • Domain d4du4a1: 4du4 A:1-375 [220031] Other proteins in same PDB: d4du4a2 automated match to d1q9xa1 protein/DNA complex; complexed with ca, dtp has additional subdomain(s) that are not in the common domain

   65. Domain for 4e3s:

       • Domain d4e3sa1: 4e3s A:1-375 [251651] Other proteins in same PDB: d4e3sa2 automated match to d3qeta1 protein/DNA complex; complexed with ca, qtp has additional subdomain(s) that are not in the common domain

   66. Domain for 4fj5:

       • Domain d4fj5a1: 4fj5 A:1-375 [251985] Other proteins in same PDB: d4fj5a2 automated match to d3spza1 protein/DNA complex; complexed with ca, dtp has additional subdomain(s) that are not in the common domain

   67. Domain for 4fj7:

       • Domain d4fj7a1: 4fj7 A:1-375 [251987] Other proteins in same PDB: d4fj7a2 automated match to d3spza1 protein/DNA complex; complexed with ca, dgt has additional subdomain(s) that are not in the common domain

   68. Domain for 4fj8:

       • Domain d4fj8a1: 4fj8 A:1-375 [251989] Other proteins in same PDB: d4fj8a2 automated match to d3spza1 protein/DNA complex; complexed with ca, dcp has additional subdomain(s) that are not in the common domain

   69. Domain for 4fj9:

       • Domain d4fj9a1: 4fj9 A:1-375 [251991] Other proteins in same PDB: d4fj9a2 automated match to d3spza1 protein/DNA complex; complexed with ca, ttp has additional subdomain(s) that are not in the common domain

   70. Domain for 4fjg:

       • Domain d4fjga1: 4fjg A:1-375 [251993] Other proteins in same PDB: d4fjga2 automated match to d3spza1 protein/DNA complex; complexed with ca, dtp has additional subdomain(s) that are not in the common domain

   71. Domain for 4fjh:

       • Domain d4fjha1: 4fjh A:1-375 [251995] Other proteins in same PDB: d4fjha2 automated match to d3spza1 protein/DNA complex; complexed with ca, dgt has additional subdomain(s) that are not in the common domain

   72. Domain for 4fji:

       • Domain d4fjia1: 4fji A:1-375 [251997] Other proteins in same PDB: d4fjia2 automated match to d3spza1 protein/DNA complex; complexed with ca, dcp has additional subdomain(s) that are not in the common domain

   73. Domain for 4fjj:

       • Domain d4fjja1: 4fjj A:1-375 [251999] Other proteins in same PDB: d4fjja2 automated match to d3spza1 protein/DNA complex; complexed with ca, ttp has additional subdomain(s) that are not in the common domain

   74. Domain for 4fjk:

       • Domain d4fjka1: 4fjk A:1-375 [252001] Other proteins in same PDB: d4fjka2 automated match to d3spza1 protein/DNA complex; complexed with ca, dtp has additional subdomain(s) that are not in the common domain

   75. Domain for 4fjl:

       • Domain d4fjla1: 4fjl A:1-375 [252003] Other proteins in same PDB: d4fjla2 automated match to d3spza1 protein/DNA complex; complexed with ca, dgt has additional subdomain(s) that are not in the common domain

   76. Domain for 4fjm:

       • Domain d4fjma1: 4fjm A:1-375 [252005] Other proteins in same PDB: d4fjma2 automated match to d3qesa1 protein/DNA complex; complexed with ca, dcp has additional subdomain(s) that are not in the common domain

   77. Domain for 4fjn:

       • Domain d4fjna1: 4fjn A:1-375 [252007] Other proteins in same PDB: d4fjna2 automated match to d3spza1 protein/DNA complex; complexed with ca, ttp has additional subdomain(s) that are not in the common domain

   78. Domain for 4fjx:

       • Domain d4fjxa1: 4fjx A:1-375 [252009] Other proteins in same PDB: d4fjxa2 automated match to d3spza1 protein/DNA complex; complexed with ca, dtp has additional subdomain(s) that are not in the common domain

   79. Domain for 4fk0:

       • Domain d4fk0a1: 4fk0 A:1-375 [252019] Other proteins in same PDB: d4fk0a2 automated match to d3spza1 protein/DNA complex; complexed with ca, dcp has additional subdomain(s) that are not in the common domain

   80. Domain for 4fk2:

       • Domain d4fk2a1: 4fk2 A:1-375 [252021] Other proteins in same PDB: d4fk2a2 automated match to d3spza1 protein/DNA complex; complexed with ca, ttp has additional subdomain(s) that are not in the common domain

   81. Domain for 4fk4:

       • Domain d4fk4a1: 4fk4 A:1-375 [252025] Other proteins in same PDB: d4fk4a2 automated match to d3spza1 protein/DNA complex; complexed with ca, dgt has additional subdomain(s) that are not in the common domain

   82. Domain for 4i9l:

       • Domain d4i9la1: 4i9l A:1-375 [229484] Other proteins in same PDB: d4i9la2 automated match to d1ih7a1 complexed with cl, gmp, so4; mutant has additional subdomain(s) that are not in the common domain

   83. Domain for 4j2a:

       • Domain d4j2aa1: 4j2a A:1-375 [237016] Other proteins in same PDB: d4j2aa2 automated match to d1ih7a1 protein/DNA complex; complexed with ca, ttp has additional subdomain(s) that are not in the common domain

   84. Domain for 4j2b:

       • Domain d4j2ba1: 4j2b A:1-375 [237014] Other proteins in same PDB: d4j2ba2 automated match to d1ih7a1 protein/DNA complex; complexed with atp, ca has additional subdomain(s) that are not in the common domain

   85. Domain for 4j2e:

       • Domain d4j2ea1: 4j2e A:1-375 [237018] Other proteins in same PDB: d4j2ea2 automated match to d1ih7a1 protein/DNA complex; complexed with atp, ca has additional subdomain(s) that are not in the common domain

   86. Domains for 4khn:

       1. Domain d4khna1: 4khn A:1-375 [235165] Other proteins in same PDB: d4khna2, d4khnb2 automated match to d4khnb1 protein/DNA complex; complexed with ca, gol, na, so4, xg4; mutant has additional subdomain(s) that are not in the common domain

       2. Domain d4khnb1: 4khn B:1-375 [228218] Other proteins in same PDB: d4khna2, d4khnb2 automated match to d1ih7a1 protein/DNA complex; complexed with ca, gol, na, so4, xg4; mutant has additional subdomain(s) that are not in the common domain

   87. Domain for 4khq:

       • Domain d4khqa1: 4khq A:1-375 [228216] Other proteins in same PDB: d4khqa2 automated match to d1ih7a1 protein/DNA complex; complexed with ca, dup, na; mutant has additional subdomain(s) that are not in the common domain

   88. Domain for 4khs:

       • Domain d4khsa1: 4khs A:1-375 [235169] Other proteins in same PDB: d4khsa2 automated match to d4khqa1 protein/DNA complex; complexed with ca, cl, na, ttp; mutant has additional subdomain(s) that are not in the common domain

   89. Domain for 4khu:

       • Domain d4khua1: 4khu A:1-375 [235171] Other proteins in same PDB: d4khua2 automated match to d4khqa1 protein/DNA complex; complexed with ca, na, ttp; mutant has additional subdomain(s) that are not in the common domain

   90. Domain for 4khw:

       • Domain d4khwa1: 4khw A:1-375 [235173] Other proteins in same PDB: d4khwa2 automated match to d4khqa1 protein/DNA complex; complexed with ca, na, ttp; mutant has additional subdomain(s) that are not in the common domain

   91. Domain for 4khy:

       • Domain d4khya1: 4khy A:1-375 [235167] Other proteins in same PDB: d4khya2 automated match to d4khqa1 protein/DNA complex; complexed with ca, na, ttp; mutant has additional subdomain(s) that are not in the common domain

   92. Domain for 4ki4:

       • Domain d4ki4a1: 4ki4 A:1-375 [235175] Other proteins in same PDB: d4ki4a2 automated match to d4khqa1 protein/DNA complex; complexed with ca, gol, na, ttp; mutant has additional subdomain(s) that are not in the common domain

   93. Domain for 4ki6:

       • Domain d4ki6a1: 4ki6 A:1-375 [235177] Other proteins in same PDB: d4ki6a2 automated match to d4khqa1 protein/DNA complex; complexed with ca, na, po4, ttp; mutant has additional subdomain(s) that are not in the common domain

2. Bacteriophage T4 [TaxId:10665] [53126] (2 PDB entries) additional N-terminal subdomain contains rudimental OB-fold

   1. Domains for 1noy:

      1. Domain d1noya_: 1noy A: [33713] exonuclease domain only protein/DNA complex; complexed with mn, zn has additional subdomain(s) that are not in the common domain

      2. Domain d1noyb_: 1noy B: [33714] exonuclease domain only protein/DNA complex; complexed with mn, zn has additional subdomain(s) that are not in the common domain

   2. Domains for 1noz:

      1. Domain d1noza_: 1noz A: [33715] exonuclease domain only has additional subdomain(s) that are not in the common domain

      2. Domain d1nozb_: 1noz B: [33716] exonuclease domain only has additional subdomain(s) that are not in the common domain

3. Desulfurococcus tok [TaxId:108142] [53130] (2 PDB entries) additional N-terminal subdomain contains rudimental OB-fold but complete ferredoxin-like fold

   1. Domain for 1d5a:

      • Domain d1d5aa1: 1d5a A:1-347 [33723] Other proteins in same PDB: d1d5aa2 complexed with mg, so4 has additional subdomain(s) that are not in the common domain

   2. Domain for 1qqc:

      • Domain d1qqca1: 1qqc A:1-347 [33724] Other proteins in same PDB: d1qqca2 complexed with mg, so4 has additional subdomain(s) that are not in the common domain

4. Escherichia coli [TaxId:562] [102482] (1 PDB entry) DNA polymerase II, additional N-terminal subdomain has an OB-fold with a ferredoxin-like fold insertion

   • Domain for 1q8i:

     • Domain d1q8ia1: 1q8i A:2-389 [96208] Other proteins in same PDB: d1q8ia2 has additional subdomain(s) that are not in the common domain

5. Pyrococcus kodakaraensis [TaxId:311400] [53131] (2 PDB entries) Uniprot P56689 1-758 # 93% sequence identity; Thermococcus kodakarensis KOD1 TaxID: 69014 additional N-terminal subdomain contains rudimental OB-fold but complete ferredoxin-like fold

   1. Domain for 1wn7:

      • Domain d1wn7a1: 1wn7 A:1-347 [121088] Other proteins in same PDB: d1wn7a2 complexed with gol, ni; mutant has additional subdomain(s) that are not in the common domain

   2. Domain for 1wns:

      • Domain d1wnsa1: 1wns A:1-347 [109437] Other proteins in same PDB: d1wnsa2 has additional subdomain(s) that are not in the common domain

6. Sulfolobus solfataricus [TaxId:2287] [117647] (1 PDB entry) Uniprot P26811 40-864

   • Domain for 1s5j:

     • Domain d1s5ja1: 1s5j A:40-449 [112040] Other proteins in same PDB: d1s5ja2 complexed with mg, so4 has additional subdomain(s) that are not in the common domain

7. Thermococcus gorgonarius [TaxId:71997] [53128] (1 PDB entry) additional N-terminal subdomain contains rudimental OB-fold but complete ferredoxin-like fold

   • Domain for 1tgo:

     • Domain d1tgoa1: 1tgo A:1-347 [33721] Other proteins in same PDB: d1tgoa2 has additional subdomain(s) that are not in the common domain

8. Thermococcus sp., 9on-7 [TaxId:35749] [53129] (1 PDB entry) additional N-terminal subdomain contains rudimental OB-fold but complete ferredoxin-like fold

   • Domain for 1qht:

     • Domain d1qhta1: 1qht A:1-347 [33722] Other proteins in same PDB: d1qhta2 has additional subdomain(s) that are not in the common domain

More info for Protein Exonuclease domain of family B DNA polymerases from c.55.3.5: DnaQ-like 3'-5' exonuclease

Timeline for Protein Exonuclease domain of family B DNA polymerases from c.55.3.5: DnaQ-like 3'-5' exonuclease:

• Protein Exonuclease domain of family B DNA polymerases from c.55.3.5: DnaQ-like 3'-5' exonuclease first appeared (with stable ids) in SCOP 1.55, called Protein Exonuclease domain of family B (archaeal and phage) DNA polymerases from c.55.3.5: DnaQ-like 3'-5' exonuclease
  
• Protein Exonuclease domain of family B DNA polymerases from c.55.3.5: DnaQ-like 3'-5' exonuclease appears in SCOPe 2.07