Lineage for Species: Human immunodeficiency virus type 1

  1. Root: SCOP 1.71
  2. 570216Class c: Alpha and beta proteins (a/b) [51349] (134 folds)
  3. 586264Fold c.55: Ribonuclease H-like motif [53066] (7 superfamilies)
    3 layers: a/b/a; mixed beta-sheet of 5 strands, order 32145; strand 2 is antiparallel to the rest
  4. 586646Superfamily c.55.3: Ribonuclease H-like [53098] (10 families) (S)
    consists of one domain of this fold
  5. 586804Family c.55.3.2: Retroviral integrase, catalytic domain [53107] (1 protein)
  6. 586805Protein Retroviral integrase, catalytic domain [53108] (3 species)
  7. 586806Species Human immunodeficiency virus type 1 [TaxId:11676] [53110] (17 PDB entries)

PDB entries in Species: Human immunodeficiency virus type 1:

  1. Domain(s) for 1b92:
  2. Domain(s) for 1b9d:
  3. Domain(s) for 1b9f:
  4. Domain(s) for 1bhl:
  5. Domain(s) for 1bi4:
    1. 586833Domain d1bi4a_: 1bi4 A: [33666]
    2. 586834Domain d1bi4b_: 1bi4 B: [33667]
    3. 586835Domain d1bi4c_: 1bi4 C: [33668]
      mutant
  6. Domain(s) for 1bis:
    1. 586812Domain d1bisa_: 1bis A: [33650]
    2. 586813Domain d1bisb_: 1bis B: [33651]
      mutant
  7. Domain(s) for 1biu:
    1. 586825Domain d1biua_: 1biu A: [33663]
    2. 586826Domain d1biub_: 1biu B: [33664]
    3. 586827Domain d1biuc_: 1biu C: [33665]
      complexed with mg; mutant
  8. Domain(s) for 1biz:
    1. 586814Domain d1biza_: 1biz A: [33652]
    2. 586815Domain d1bizb_: 1biz B: [33653]
      complexed with cac; mutant
  9. Domain(s) for 1bl3:
    1. 586817Domain d1bl3a_: 1bl3 A: [33655]
    2. 586818Domain d1bl3b_: 1bl3 B: [33656]
    3. 586819Domain d1bl3c_: 1bl3 C: [33657]
      complexed with mg; mutant
  10. Domain(s) for 1ex4:
    1. 586837Domain d1ex4a2: 1ex4 A:56-222 [33670]
      Other proteins in same PDB: d1ex4a1, d1ex4b1
    2. 586838Domain d1ex4b2: 1ex4 B:55-222 [33671]
      Other proteins in same PDB: d1ex4a1, d1ex4b1
      complexed with cps; mutant
  11. Domain(s) for 1exq:
    1. 586807Domain d1exqa_: 1exq A: [33646]
    2. 586808Domain d1exqb_: 1exq B: [33647]
      complexed with cd, cl, so4; mutant
  12. Domain(s) for 1hyv:
  13. Domain(s) for 1hyz:
  14. Domain(s) for 1itg:
  15. Domain(s) for 1k6y:
    1. 586829Domain d1k6ya2: 1k6y A:56-210 [68240]
      Other proteins in same PDB: d1k6ya1, d1k6yb1, d1k6yc1, d1k6yd1
    2. 586830Domain d1k6yb2: 1k6y B:56-212 [68242]
      Other proteins in same PDB: d1k6ya1, d1k6yb1, d1k6yc1, d1k6yd1
    3. 586831Domain d1k6yc2: 1k6y C:56-209 [68244]
      Other proteins in same PDB: d1k6ya1, d1k6yb1, d1k6yc1, d1k6yd1
    4. 586832Domain d1k6yd2: 1k6y D:56-211 [68246]
      Other proteins in same PDB: d1k6ya1, d1k6yb1, d1k6yc1, d1k6yd1
      complexed with k, po4, zn; mutant
  16. Domain(s) for 1qs4:
    1. 586820Domain d1qs4a_: 1qs4 A: [33658]
    2. 586821Domain d1qs4b_: 1qs4 B: [33659]
    3. 586822Domain d1qs4c_: 1qs4 C: [33660]
  17. Domain(s) for 2itg:

More info for Species Human immunodeficiency virus type 1 [TaxId:11676] from c.55.3.2 Retroviral integrase, catalytic domain

Timeline for Species Human immunodeficiency virus type 1 [TaxId:11676] from c.55.3.2 Retroviral integrase, catalytic domain: