Lineage for Species: Human immunodeficiency virus type 1 [TaxId: 11676]

  1. Root: SCOPe 2.03
  2. 1336837Class c: Alpha and beta proteins (a/b) [51349] (147 folds)
  3. 1372364Fold c.55: Ribonuclease H-like motif [53066] (7 superfamilies)
    3 layers: a/b/a; mixed beta-sheet of 5 strands, order 32145; strand 2 is antiparallel to the rest
  4. 1373755Superfamily c.55.3: Ribonuclease H-like [53098] (15 families) (S)
    consists of one domain of this fold
  5. 1373756Family c.55.3.1: Ribonuclease H [53099] (5 proteins)
  6. 1373803Protein HIV RNase H (Domain of reverse transcriptase) [53105] (3 species)
  7. 1373813Species Human immunodeficiency virus type 1 [TaxId:11676] [53106] (101 PDB entries)
    Uniprot P04585 159-692 # chain A coverage; chain B is shorter: 162-582 ! Uniprot P03366 186-725 # chain A coverage; chain B coverage: 156-584 ! Uniprot P04585 158-698 # chain A coverage; chain B is shorter: 159-595

PDB entries in Species: Human immunodeficiency virus type 1 [TaxId: 11676]:

  1. Domain(s) for 1bqm:
  2. Domain(s) for 1bqn:
  3. Domain(s) for 1c0t:
  4. Domain(s) for 1c0u:
  5. Domain(s) for 1c1b:
  6. Domain(s) for 1c1c:
  7. Domain(s) for 1dlo:
  8. Domain(s) for 1dtq:
  9. Domain(s) for 1dtt:
  10. Domain(s) for 1eet:
  11. Domain(s) for 1ep4:
  12. Domain(s) for 1fk9:
  13. Domain(s) for 1fko:
  14. Domain(s) for 1fkp:
  15. Domain(s) for 1hmv:
    1. 1373892Domain d1hmva1: 1hmv A:430-554 [33587]
      Other proteins in same PDB: d1hmva2, d1hmvb_, d1hmvc2, d1hmvd_, d1hmve2, d1hmvf_, d1hmvg2, d1hmvh_
      complexed with mg
    2. 1373893Domain d1hmvc1: 1hmv C:430-554 [118502]
      Other proteins in same PDB: d1hmva2, d1hmvb_, d1hmvc2, d1hmvd_, d1hmve2, d1hmvf_, d1hmvg2, d1hmvh_
      duplicate of 1HMV A:430-554
      complexed with mg
    3. 1373894Domain d1hmve1: 1hmv E:430-554 [118505]
      Other proteins in same PDB: d1hmva2, d1hmvb_, d1hmvc2, d1hmvd_, d1hmve2, d1hmvf_, d1hmvg2, d1hmvh_
      duplicate of 1HMV A:430-554
      complexed with mg
    4. 1373895Domain d1hmvg1: 1hmv G:430-554 [118508]
      Other proteins in same PDB: d1hmva2, d1hmvb_, d1hmvc2, d1hmvd_, d1hmve2, d1hmvf_, d1hmvg2, d1hmvh_
      duplicate of 1HMV A:430-554
      complexed with mg
  16. Domain(s) for 1hni:
  17. Domain(s) for 1hnv:
  18. Domain(s) for 1hpz:
  19. Domain(s) for 1hqe:
  20. Domain(s) for 1hqu:
  21. Domain(s) for 1hrh:
    1. 1373826Domain d1hrha1: 1hrh A:432-556 [33577]
    2. 1373827Domain d1hrhb1: 1hrh B:432-554 [33578]
  22. Domain(s) for 1hvu:
    1. 1373924Domain d1hvua1: 1hvu A:430-554 [33600]
      Other proteins in same PDB: d1hvua2, d1hvub_, d1hvud2, d1hvue_, d1hvug2, d1hvuh_, d1hvuj2, d1hvuk_
      protein/RNA complex
    2. 1373925Domain d1hvud1: 1hvu D:430-554 [33601]
      Other proteins in same PDB: d1hvua2, d1hvub_, d1hvud2, d1hvue_, d1hvug2, d1hvuh_, d1hvuj2, d1hvuk_
      protein/RNA complex
    3. 1373926Domain d1hvug1: 1hvu G:430-554 [33602]
      Other proteins in same PDB: d1hvua2, d1hvub_, d1hvud2, d1hvue_, d1hvug2, d1hvuh_, d1hvuj2, d1hvuk_
      protein/RNA complex
    4. 1373927Domain d1hvuj1: 1hvu J:430-554 [33603]
      Other proteins in same PDB: d1hvua2, d1hvub_, d1hvud2, d1hvue_, d1hvug2, d1hvuh_, d1hvuj2, d1hvuk_
      protein/RNA complex
  23. Domain(s) for 1hys:
  24. Domain(s) for 1ikv:
  25. Domain(s) for 1ikw:
  26. Domain(s) for 1ikx:
  27. Domain(s) for 1iky:
  28. Domain(s) for 1j5o:
  29. Domain(s) for 1jkh:
  30. Domain(s) for 1jla:
  31. Domain(s) for 1jlb:
  32. Domain(s) for 1jlc:
  33. Domain(s) for 1jle:
  34. Domain(s) for 1jlf:
  35. Domain(s) for 1jlg:
  36. Domain(s) for 1jlq:
  37. Domain(s) for 1klm:
  38. Domain(s) for 1lw0:
  39. Domain(s) for 1lw2:
  40. Domain(s) for 1lwc:
  41. Domain(s) for 1lwe:
  42. Domain(s) for 1lwf:
  43. Domain(s) for 1n5y:
  44. Domain(s) for 1n6q:
  45. Domain(s) for 1o1w:
  46. Domain(s) for 1qe1:
  47. Domain(s) for 1r0a:
  48. Domain(s) for 1rdh:
    1. 1373890Domain d1rdha1: 1rdh A:432-556 [33588]
      CA-atoms only
    2. 1373891Domain d1rdhb1: 1rdh B:432-556 [33589]
      CA-atoms only
  49. Domain(s) for 1rev:
  50. Domain(s) for 1rt1:
  51. Domain(s) for 1rt2:
  52. Domain(s) for 1rt3:
  53. Domain(s) for 1rt4:
  54. Domain(s) for 1rt5:
  55. Domain(s) for 1rt6:
  56. Domain(s) for 1rt7:
  57. Domain(s) for 1rtd:
    1. 1373900Domain d1rtda1: 1rtd A:430-554 [33591]
      Other proteins in same PDB: d1rtda2, d1rtdb_, d1rtdc2, d1rtdd_
      protein/DNA complex; complexed with mg, ttp
    2. 1373901Domain d1rtdc1: 1rtd C:430-554 [33592]
      Other proteins in same PDB: d1rtda2, d1rtdb_, d1rtdc2, d1rtdd_
      protein/DNA complex; complexed with mg, ttp
  58. Domain(s) for 1rth:
  59. Domain(s) for 1rti:
  60. Domain(s) for 1rtj:
  61. Domain(s) for 1s1t:
  62. Domain(s) for 1s1u:
  63. Domain(s) for 1s1v:
  64. Domain(s) for 1s1w:
  65. Domain(s) for 1s1x:
  66. Domain(s) for 1s6p:
  67. Domain(s) for 1s6q:
  68. Domain(s) for 1s9e:
  69. Domain(s) for 1s9g:
  70. Domain(s) for 1suq:
  71. Domain(s) for 1sv5:
  72. Domain(s) for 1t03:
  73. Domain(s) for 1t05:
  74. Domain(s) for 1tkt:
  75. Domain(s) for 1tkx:
  76. Domain(s) for 1tkz:
  77. Domain(s) for 1tl1:
  78. Domain(s) for 1tl3:
  79. Domain(s) for 1tv6:
  80. Domain(s) for 1tvr:
  81. Domain(s) for 1uwb:
  82. Domain(s) for 1vrt:
  83. Domain(s) for 1vru:
  84. Domain(s) for 2b5j:
  85. Domain(s) for 2b6a:
  86. Domain(s) for 2ban:
  87. Domain(s) for 2be2:
  88. Domain(s) for 2hmi:
  89. Domain(s) for 2rki:
  90. Domain(s) for 2won:
  91. Domain(s) for 3dol:
  92. Domain(s) for 3hvt:
  93. Domain(s) for 3isn:
  94. Domain(s) for 3ith:
    1. 1373856Domain d3itha2: 3ith A:430-556 [211947]
      Other proteins in same PDB: d3itha1, d3ithb_, d3ithc1, d3ithd_
      automated match to d1ikwa1
      complexed with edm
    2. 1373857Domain d3ithc2: 3ith C:430-556 [211950]
      Other proteins in same PDB: d3itha1, d3ithb_, d3ithc1, d3ithd_
      automated match to d1ikwa1
      complexed with edm
  95. Domain(s) for 3k2p:
    1. 1373816Domain d3k2pa_: 3k2p A: [178980]
      automated match to d1o1wa_
      protein/RNA complex; complexed with jth, mn
    2. 1373817Domain d3k2pb_: 3k2p B: [178981]
      automated match to d1o1wa_
      protein/RNA complex; complexed with jth, mn
  96. Domain(s) for 3lak:
  97. Domain(s) for 3lal:
  98. Domain(s) for 3lam:
  99. Domain(s) for 3lan:
  100. Domain(s) for 3lp3:
    1. 1373851Domain d3lp3a_: 3lp3 A: [180484]
      automated match to d1o1wa_
      complexed with lp9, mn
    2. 1373852Domain d3lp3b_: 3lp3 B: [180485]
      automated match to d1o1wa_
      complexed with lp9, mn
  101. Domain(s) for 4je2:
    1. 1373814Domain d4je2a_: 4je2 A: [237256]
      automated match to d1o1wa_
      complexed with f95, mn
    2. 1373815Domain d4je2b_: 4je2 B: [237255]
      automated match to d1o1wa_
      complexed with f95, mn

More info for Species Human immunodeficiency virus type 1 [TaxId:11676] from c.55.3.1 HIV RNase H (Domain of reverse transcriptase)

Timeline for Species Human immunodeficiency virus type 1 [TaxId:11676] from c.55.3.1 HIV RNase H (Domain of reverse transcriptase):