Lineage for Protein: HIV RNase H (Domain of reverse transcriptase)

  1. Root: SCOPe 2.06
  2. 2078559Class c: Alpha and beta proteins (a/b) [51349] (148 folds)
  3. 2122050Fold c.55: Ribonuclease H-like motif [53066] (7 superfamilies)
    3 layers: a/b/a; mixed beta-sheet of 5 strands, order 32145; strand 2 is antiparallel to the rest
  4. 2123751Superfamily c.55.3: Ribonuclease H-like [53098] (15 families) (S)
    consists of one domain of this fold
  5. 2123752Family c.55.3.1: Ribonuclease H [53099] (5 protein domains)
  6. 2123803Protein HIV RNase H (Domain of reverse transcriptase) [53105] (3 species)

Species:

  1. 2123804Hiv-1 m:b_hxb2r [TaxId:11706] [224897] (8 PDB entries)
    1. Domain for 3dle:
    2. Domain for 3dlg:
    3. Domain for 3mec:
    4. Domain for 3mee:
    5. Domain for 3qin:
    6. Domain for 3qio:
    7. Domain for 3qip:
    8. Domain for 4i7f:
  2. 2123813Human immunodeficiency virus type 1 [TaxId:11676] [53106] (104 PDB entries)
    Uniprot P04585 159-692 # chain A coverage; chain B is shorter: 162-582 ! Uniprot P03366 186-725 # chain A coverage; chain B coverage: 156-584 ! Uniprot P04585 158-698 # chain A coverage; chain B is shorter: 159-595
    1. Domain for 1bqm:
    2. Domain for 1bqn:
    3. Domain for 1c0t:
    4. Domain for 1c0u:
    5. Domain for 1c1b:
    6. Domain for 1c1c:
    7. Domain for 1dlo:
    8. Domain for 1dtq:
    9. Domain for 1dtt:
    10. Domain for 1eet:
    11. Domain for 1ep4:
    12. Domain for 1fk9:
    13. Domain for 1fko:
    14. Domain for 1fkp:
    15. Domains for 1hmv:
      1. 2123892Domain d1hmva1: 1hmv A:430-554 [33587]
        Other proteins in same PDB: d1hmva2, d1hmvb_, d1hmvc2, d1hmvd_, d1hmve2, d1hmvf_, d1hmvg2, d1hmvh_
        complexed with mg
      2. 2123893Domain d1hmvc1: 1hmv C:430-554 [118502]
        Other proteins in same PDB: d1hmva2, d1hmvb_, d1hmvc2, d1hmvd_, d1hmve2, d1hmvf_, d1hmvg2, d1hmvh_
        duplicate of 1HMV A:430-554
        complexed with mg
      3. 2123894Domain d1hmve1: 1hmv E:430-554 [118505]
        Other proteins in same PDB: d1hmva2, d1hmvb_, d1hmvc2, d1hmvd_, d1hmve2, d1hmvf_, d1hmvg2, d1hmvh_
        duplicate of 1HMV A:430-554
        complexed with mg
      4. 2123895Domain d1hmvg1: 1hmv G:430-554 [118508]
        Other proteins in same PDB: d1hmva2, d1hmvb_, d1hmvc2, d1hmvd_, d1hmve2, d1hmvf_, d1hmvg2, d1hmvh_
        duplicate of 1HMV A:430-554
        complexed with mg
    16. Domain for 1hni:
    17. Domain for 1hnv:
    18. Domain for 1hpz:
    19. Domain for 1hqe:
    20. Domain for 1hqu:
    21. Domains for 1hrh:
      1. 2123827Domain d1hrha1: 1hrh A:432-556 [33577]
      2. 2123828Domain d1hrhb1: 1hrh B:432-554 [33578]
    22. Domains for 1hvu:
      1. 2123927Domain d1hvua1: 1hvu A:430-554 [33600]
        Other proteins in same PDB: d1hvua2, d1hvub_, d1hvud2, d1hvue_, d1hvug2, d1hvuh_, d1hvuj2, d1hvuk_
        protein/RNA complex
      2. 2123928Domain d1hvud1: 1hvu D:430-554 [33601]
        Other proteins in same PDB: d1hvua2, d1hvub_, d1hvud2, d1hvue_, d1hvug2, d1hvuh_, d1hvuj2, d1hvuk_
        protein/RNA complex
      3. 2123929Domain d1hvug1: 1hvu G:430-554 [33602]
        Other proteins in same PDB: d1hvua2, d1hvub_, d1hvud2, d1hvue_, d1hvug2, d1hvuh_, d1hvuj2, d1hvuk_
        protein/RNA complex
      4. 2123930Domain d1hvuj1: 1hvu J:430-554 [33603]
        Other proteins in same PDB: d1hvua2, d1hvub_, d1hvud2, d1hvue_, d1hvug2, d1hvuh_, d1hvuj2, d1hvuk_
        protein/RNA complex
    23. Domain for 1hys:
    24. Domain for 1ikv:
    25. Domain for 1ikw:
    26. Domain for 1ikx:
    27. Domain for 1iky:
    28. Domain for 1j5o:
    29. Domain for 1jkh:
    30. Domain for 1jla:
    31. Domain for 1jlb:
    32. Domain for 1jlc:
    33. Domain for 1jle:
    34. Domain for 1jlf:
    35. Domain for 1jlg:
    36. Domain for 1jlq:
    37. Domain for 1klm:
    38. Domain for 1lku:
    39. Domain for 1lw0:
    40. Domain for 1lw2:
    41. Domain for 1lwc:
    42. Domain for 1lwe:
    43. Domain for 1lwf:
    44. Domain for 1n5y:
    45. Domain for 1n6q:
    46. Domain for 1o1w:
    47. Domain for 1qe1:
    48. Domain for 1r0a:
    49. Domains for 1rdh:
      1. 2123889Domain d1rdha1: 1rdh A:432-556 [33588]
        CA-atoms only
      2. 2123890Domain d1rdhb1: 1rdh B:432-556 [33589]
        CA-atoms only
    50. Domain for 1rev:
    51. Domain for 1rt1:
    52. Domain for 1rt2:
    53. Domain for 1rt3:
    54. Domain for 1rt4:
    55. Domain for 1rt5:
    56. Domain for 1rt6:
    57. Domain for 1rt7:
    58. Domains for 1rtd:
      1. 2123900Domain d1rtda1: 1rtd A:430-554 [33591]
        Other proteins in same PDB: d1rtda2, d1rtdb_, d1rtdc2, d1rtdd_
        protein/DNA complex; complexed with mg, ttp
      2. 2123901Domain d1rtdc1: 1rtd C:430-554 [33592]
        Other proteins in same PDB: d1rtda2, d1rtdb_, d1rtdc2, d1rtdd_
        protein/DNA complex; complexed with mg, ttp
    59. Domain for 1rth:
    60. Domain for 1rti:
    61. Domain for 1rtj:
    62. Domain for 1s1t:
    63. Domain for 1s1u:
    64. Domain for 1s1v:
    65. Domain for 1s1w:
    66. Domain for 1s1x:
    67. Domain for 1s6p:
    68. Domain for 1s6q:
    69. Domain for 1s9e:
    70. Domain for 1s9g:
    71. Domain for 1suq:
    72. Domain for 1sv5:
    73. Domain for 1t03:
    74. Domain for 1t05:
    75. Domain for 1tkt:
    76. Domain for 1tkx:
    77. Domain for 1tkz:
    78. Domain for 1tl1:
    79. Domain for 1tl3:
    80. Domain for 1tv6:
    81. Domain for 1tvr:
    82. Domain for 1uwb:
    83. Domain for 1vrt:
    84. Domain for 1vru:
    85. Domain for 2b5j:
    86. Domain for 2b6a:
    87. Domain for 2ban:
    88. Domain for 2be2:
    89. Domain for 2hmi:
    90. Domain for 2rki:
    91. Domain for 2won:
    92. Domain for 3dol:
    93. Domain for 3hvt:
    94. Domain for 3isn:
    95. Domains for 3ith:
      1. 2123855Domain d3itha2: 3ith A:430-556 [211947]
        Other proteins in same PDB: d3itha1, d3ithb_, d3ithc1, d3ithd_
        automated match to d1ikwa1
        complexed with edm
      2. 2123856Domain d3ithc2: 3ith C:430-556 [211950]
        Other proteins in same PDB: d3itha1, d3ithb_, d3ithc1, d3ithd_
        automated match to d1ikwa1
        complexed with edm
    96. Domains for 3k2p:
      1. 2123818Domain d3k2pa_: 3k2p A: [178980]
        automated match to d1o1wa_
        protein/RNA complex; complexed with jth, mn
      2. 2123819Domain d3k2pb_: 3k2p B: [178981]
        automated match to d1o1wa_
        protein/RNA complex; complexed with jth, mn
    97. Domain for 3lak:
    98. Domain for 3lal:
    99. Domain for 3lam:
    100. Domain for 3lan:
    101. Domains for 3lp3:
      1. 2123850Domain d3lp3a_: 3lp3 A: [180484]
        automated match to d1o1wa_
        complexed with lp9, mn
      2. 2123851Domain d3lp3b_: 3lp3 B: [180485]
        automated match to d1o1wa_
        complexed with lp9, mn
    102. Domains for 4je2:
      1. 2123814Domain d4je2a_: 4je2 A: [307584]
        automated match to d4qaga_
        complexed with f95, mn
      2. 2123815Domain d4je2b_: 4je2 B: [307585]
        automated match to d4qaga_
        complexed with f95, mn
    103. Domains for 4qag:
      1. 2123816Domain d4qaga_: 4qag A: [257642]
        automated match to d4je2a_
        protein/RNA complex; complexed with f95, mn
      2. 2123817Domain d4qagb_: 4qag B: [258337]
        automated match to d3k2pa_
        protein/RNA complex; complexed with f95, mn
    104. Domain for 5k14:
  3. 2123931Human immunodeficiency virus type 2 [TaxId:11709] [82443] (1 PDB entry)

More info for Protein HIV RNase H (Domain of reverse transcriptase) from c.55.3.1: Ribonuclease H

Timeline for Protein HIV RNase H (Domain of reverse transcriptase) from c.55.3.1: Ribonuclease H: